Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

990337 .. 991426

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1013100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGTGTGCGAAATCAGAAGTAAGGCTCCTGGACCTAGATTTGGGTTGTGAAGGGATGTCCACTGGCTTGTGCCTTGGTGCACATTTGGGCAGTGTCAATCTTGTAACAATATGGGCTGTTGACTGCAATGGATACGCTTGCAAGAGTCTAGAACAGAAGTACAGAACTATCCAGAGACAGATGTTTGTGTCCGAAATGAAGCTGCTGAAGATTTCCTCAAAATGCTCAAGGAATGGAGAAAATATTGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

87

Amino Acids

9.39

Weight (kDa)

8.26

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	172
Alw44I	GTGCAC	1 cut(s)	81
ApaLI	GTGCAC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	38, 152
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	63, 100
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	4 cut(s)	28, 69, 119, 205
CviKI_1	RGCY	4 cut(s)	28, 69, 119, 205
CviQI	GTAC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaiI	YATR	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	2 cut(s)	38, 152
GluI	GCNGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	63, 83, 124
Hpy188I	TCNGA	2 cut(s)	19, 196
Hpy188III	TCNNGA	2 cut(s)	152, 175
Hpy8I	GTNNAC	3 cut(s)	63, 83, 124
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	83, 129, 144
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	17, 44, 51, 188
Lsp1109I	GCAGC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	38, 152
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	2 cut(s)	39, 207
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	38, 152
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	76
TatI	WGTACW	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TscAI	CASTG	2 cut(s)	70, 100
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	70, 100
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	151
XspI	CTAG	2 cut(s)	38, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.