DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69770 |
| fragaria_vesca | FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560 |
| malus_domestica | MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1 |
| prunus_persica | Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1 |
| pyrus_communis | pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900 |
| rosa_chinensis | RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071 |
| rosa_laevigata | RLG00000005861 RLG00000009362 RLG00000015713 |
| rosa_multiflora | Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620 |
| rosa_rugosa | Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400 |
| rosa_samantha | Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500 |
| rosa_wichuraiana | Rw2G001030 Rw4G007200 Rw4G035230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1522 |
| Acc36I | ACCTGC | 1 cut(s) | 199 |
| Acc65I | GGTACC | 1 cut(s) | 2089 |
| AccB1I | GGYRCC | 1 cut(s) | 2089 |
| AccBSI | CCGCTC | 1 cut(s) | 1246 |
| AccI | GTMKAC | 4 cut(s) | 794, 1681, 2055, 2257 |
| AccII | CGCG | 1 cut(s) | 427 |
| AccIII | TCCGGA | 1 cut(s) | 2437 |
| AciI | CCGC | 7 cut(s) | 13, 149, 684, 1246, 1583, 1760, 2375 |
| AclWI | GGATC | 6 cut(s) | 455, 1130, 1168, 1370, 2039, 2052 |
| AcoI | YGGCCR | 2 cut(s) | 3, 663 |
| AcsI | RAATTY | 5 cut(s) | 244, 368, 471, 1481, 1691 |
| AcuI | CTGAAG | 3 cut(s) | 905, 948, 1065 |
| AcvI | CACGTG | 1 cut(s) | 1961 |
| AcyI | GRCGYC | 1 cut(s) | 1519 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 12, 1183, 1298, 1337 |
| AflII | CTTAAG | 1 cut(s) | 1436 |
| AflIII | ACRYGT | 1 cut(s) | 1960 |
| AgsI | TTSAA | 9 cut(s) | 155, 393, 491, 630, 1018, 1408, 2127, 2315, 2346 |
| AjiI | CACGTC | 1 cut(s) | 2255 |
| AjnI | CCWGG | 6 cut(s) | 95, 1208, 1297, 1755, 1803, 1901 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1827, 1859 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 119, 151, 1509, 1541 |
| Alw26I | GTCTC | 2 cut(s) | 1904, 2153 |
| AlwI | GGATC | 6 cut(s) | 455, 1130, 1168, 1370, 2039, 2052 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2339 |
| Aor13HI | TCCGGA | 1 cut(s) | 2437 |
| AoxI | GGCC | 9 cut(s) | 3, 33, 121, 142, 179, 663, 799, 1619, 2184 |
| ApeKI | GCWGC | 4 cut(s) | 82, 1562, 1879, 1882 |
| ApoI | RAATTY | 5 cut(s) | 244, 368, 471, 1481, 1691 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 513, 933, 1412 |
| Asp718I | GGTACC | 1 cut(s) | 2089 |
| AspLEI | GCGC | 2 cut(s) | 427, 788 |
| AspS9I | GGNCC | 6 cut(s) | 122, 143, 180, 1325, 2184, 2291 |
| AsuC2I | CCSGG | 2 cut(s) | 125, 1618 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 1145, 1313 |
| AsuII | TTCGAA | 1 cut(s) | 56 |
| AvaII | GGWCC | 2 cut(s) | 1325, 2291 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1241, 1274 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 2044 |
| BanI | GGYRCC | 1 cut(s) | 2089 |
| BanII | GRGCYC | 2 cut(s) | 132, 1618 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2414, 2446 |
| BauI | CACGAG | 1 cut(s) | 1475 |
| BbrPI | CACGTG | 1 cut(s) | 1961 |
| BbsI | GAAGAC | 2 cut(s) | 23, 39 |
| BbvI | GCAGC | 4 cut(s) | 94, 1574, 1866, 1894 |
| BccI | CCATC | 7 cut(s) | 107, 171, 281, 380, 557, 903, 1484 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 6 cut(s) | 97, 1210, 1299, 1757, 1805, 1903 |
| BciVI | GTATCC | 1 cut(s) | 2351 |
| BclI | TGATCA | 1 cut(s) | 1921 |
| BcnI | CCSGG | 2 cut(s) | 125, 1618 |
| BcoDI | GTCTC | 2 cut(s) | 1904, 2153 |
| BfaI | CTAG | 8 cut(s) | 258, 365, 741, 764, 1118, 1739, 1970, 2009 |
| BfmI | CTRYAG | 1 cut(s) | 1880 |
| BfrI | CTTAAG | 1 cut(s) | 1436 |
| BfuAI | ACCTGC | 1 cut(s) | 199 |
| BfuI | GTATCC | 1 cut(s) | 2351 |
| BglII | AGATCT | 1 cut(s) | 2002 |
| BisI | GCNGC | 4 cut(s) | 83, 1563, 1880, 1883 |
| BlsI | GCNGC | 4 cut(s) | 84, 1564, 1881, 1884 |
| BmcAI | AGTACT | 1 cut(s) | 1116 |
| Bme1390I | CCNGG | 8 cut(s) | 97, 125, 1210, 1299, 1618, 1757, 1805, 1903 |
| Bme18I | GGWCC | 2 cut(s) | 1325, 2291 |
| BmgBI | CACGTC | 1 cut(s) | 2255 |
| BmgT120I | GGNCC | 6 cut(s) | 122, 143, 180, 1325, 2184, 2291 |
| BmiI | GGNNCC | 7 cut(s) | 129, 1215, 1496, 1615, 1827, 2046, 2091 |
| BmrFI | CCNGG | 8 cut(s) | 97, 125, 1210, 1299, 1618, 1757, 1805, 1903 |
| BmsI | GCATC | 7 cut(s) | 50, 195, 978, 1183, 1563, 1753, 2221 |
| BpiI | GAAGAC | 2 cut(s) | 23, 39 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1621, 1653 |
| BpmI | CTGGAG | 1 cut(s) | 712 |
| Bpu14I | TTCGAA | 1 cut(s) | 56 |
| BpuMI | CCSGG | 2 cut(s) | 125, 1618 |
| BsaAI | YACGTR | 2 cut(s) | 322, 1961 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1553 |
| BsaHI | GRCGYC | 1 cut(s) | 1519 |
| BsaJI | CCNNGG | 6 cut(s) | 36, 808, 1209, 1336, 1498, 1901 |
| BsaWI | WCCGGW | 2 cut(s) | 1176, 2437 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 12, 1183, 1298, 1337 |
| Bse1I | ACTGG | 3 cut(s) | 729, 802, 2294 |
| Bse3DI | GCAATG | 3 cut(s) | 795, 941, 2329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1553 |
| BseAI | TCCGGA | 1 cut(s) | 2437 |
| BseBI | CCWGG | 6 cut(s) | 97, 1210, 1299, 1757, 1805, 1903 |
| BseDI | CCNNGG | 6 cut(s) | 36, 808, 1209, 1336, 1498, 1901 |
| BseGI | GGATG | 7 cut(s) | 292, 895, 1315, 1768, 1813, 2161, 2212 |
| BseJI | GATNNNNATC | 1 cut(s) | 1553 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 12, 1183, 1298, 1337 |
| BseMI | GCAATG | 3 cut(s) | 795, 941, 2329 |
| BseMII | CTCAG | 5 cut(s) | 509, 1220, 1617, 1876, 2409 |
| BseNI | ACTGG | 3 cut(s) | 729, 802, 2294 |
| BseXI | GCAGC | 4 cut(s) | 94, 1574, 1866, 1894 |
| BseYI | CCCAGC | 1 cut(s) | 1565 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 427 |
| BshFI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1621, 2186 |
| BshNI | GGYRCC | 1 cut(s) | 2089 |
| BsiSI | CCGG | 5 cut(s) | 125, 666, 1177, 1618, 2438 |
| BslFI | GGGAC | 2 cut(s) | 1530, 2134 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 12, 1183, 1298, 1337 |
| BsmAI | GTCTC | 2 cut(s) | 1904, 2153 |
| BsmBI | CGTCTC | 1 cut(s) | 1904 |
| BsmFI | GGGAC | 2 cut(s) | 1530, 2134 |
| BsmI | GAATGC | 3 cut(s) | 28, 515, 2254 |
| BsnI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1621, 2186 |
| Bsp119I | TTCGAA | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 2 cut(s) | 132, 1618 |
| Bsp13I | TCCGGA | 1 cut(s) | 2437 |
| BspACI | CCGC | 7 cut(s) | 13, 149, 684, 1246, 1583, 1760, 2375 |
| BspANI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1621, 2186 |
| BspCNI | CTCAG | 5 cut(s) | 510, 1221, 1618, 1875, 2410 |
| BspEI | TCCGGA | 1 cut(s) | 2437 |
| BspFNI | CGCG | 1 cut(s) | 427 |
| BspLI | GGNNCC | 7 cut(s) | 129, 1215, 1496, 1615, 1827, 2046, 2091 |
| BspMAI | CTGCAG | 1 cut(s) | 1884 |
| BspMI | ACCTGC | 1 cut(s) | 199 |
| BspPI | GGATC | 6 cut(s) | 455, 1130, 1168, 1370, 2039, 2052 |
| BspQI | GCTCTTC | 1 cut(s) | 1757 |
| BspT104I | TTCGAA | 1 cut(s) | 56 |
| BspT107I | GGYRCC | 1 cut(s) | 2089 |
| BspTI | CTTAAG | 1 cut(s) | 1436 |
| BsrBI | CCGCTC | 1 cut(s) | 1246 |
| BsrDI | GCAATG | 3 cut(s) | 795, 941, 2329 |
| BsrI | ACTGG | 3 cut(s) | 729, 802, 2294 |
| BssECI | CCNNGG | 6 cut(s) | 36, 808, 1209, 1336, 1498, 1901 |
| BssNAI | GTATAC | 1 cut(s) | 1682 |
| BssNI | GRCGYC | 1 cut(s) | 1519 |
| BssSI | CACGAG | 1 cut(s) | 1475 |
| BssT1I | CCWWGG | 3 cut(s) | 808, 1336, 1498 |
| Bst1107I | GTATAC | 1 cut(s) | 1682 |
| Bst2BI | CACGAG | 1 cut(s) | 1475 |
| Bst2UI | CCWGG | 6 cut(s) | 97, 1210, 1299, 1757, 1805, 1903 |
| Bst4CI | ACNGT | 5 cut(s) | 436, 1169, 1708, 2164, 2173 |
| Bst6I | CTCTTC | 2 cut(s) | 685, 1757 |
| BstACI | GRCGYC | 1 cut(s) | 1519 |
| BstAFI | CTTAAG | 1 cut(s) | 1436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 821 |
| BstBAI | YACGTR | 2 cut(s) | 322, 1961 |
| BstBI | TTCGAA | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 7 cut(s) | 68, 169, 173, 648, 663, 826, 870 |
| BstDEI | CTNAG | 7 cut(s) | 518, 1229, 1626, 1862, 1977, 2285, 2418 |
| BstF5I | GGATG | 7 cut(s) | 292, 895, 1315, 1768, 1813, 2161, 2212 |
| BstFNI | CGCG | 1 cut(s) | 427 |
| BstHHI | GCGC | 2 cut(s) | 427, 788 |
| BstMAI | GTCTC | 2 cut(s) | 1904, 2153 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 821, 1568 |
| BstNI | CCWGG | 6 cut(s) | 97, 1210, 1299, 1757, 1805, 1903 |
| BstNSI | RCATGY | 2 cut(s) | 819, 872 |
| BstSCI | CCNGG | 8 cut(s) | 95, 123, 1208, 1297, 1616, 1755, 1803, 1901 |
| BstSFI | CTRYAG | 1 cut(s) | 1880 |
| BstUI | CGCG | 1 cut(s) | 427 |
| BstV1I | GCAGC | 4 cut(s) | 94, 1574, 1866, 1894 |
| BstV2I | GAAGAC | 2 cut(s) | 23, 39 |
| BstX2I | RGATCY | 5 cut(s) | 460, 1173, 1375, 2002, 2044 |
| BstYI | RGATCY | 5 cut(s) | 460, 1173, 1375, 2002, 2044 |
| BstZ17I | GTATAC | 1 cut(s) | 1682 |
| BsuI | GTATCC | 1 cut(s) | 2351 |
| BsuRI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1621, 2186 |
| BtgZI | GCGATG | 1 cut(s) | 190 |
| BtrI | CACGTC | 1 cut(s) | 2255 |
| BtsCI | GGATG | 7 cut(s) | 292, 895, 1315, 1768, 1813, 2161, 2212 |
| BtsI | GCAGTG | 1 cut(s) | 375 |
| BtsIMutI | CAGTG | 3 cut(s) | 375, 1074, 1900 |
| BveI | ACCTGC | 1 cut(s) | 199 |
| Cac8I | GCNNGC | 7 cut(s) | 68, 169, 173, 648, 663, 826, 870 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2339 |
| CfoI | GCGC | 2 cut(s) | 427, 788 |
| Cfr13I | GGNCC | 6 cut(s) | 122, 143, 180, 1325, 2184, 2291 |
| CseI | GACGC | 3 cut(s) | 173, 323, 1921 |
| CsiI | ACCWGGT | 1 cut(s) | 1297 |
| CviAII | CATG | 8 cut(s) | 816, 869, 1010, 1332, 1417, 1531, 1558, 2018 |
| DdeI | CTNAG | 7 cut(s) | 518, 1229, 1626, 1862, 1977, 2285, 2418 |
| DraI | TTTAAA | 1 cut(s) | 1030 |
| EaeI | YGGCCR | 2 cut(s) | 3, 663 |
| Eam1104I | CTCTTC | 2 cut(s) | 685, 1757 |
| EarI | CTCTTC | 2 cut(s) | 685, 1757 |
| EciI | GGCGGA | 1 cut(s) | 1775 |
| Eco130I | CCWWGG | 3 cut(s) | 808, 1336, 1498 |
| Eco24I | GRGCYC | 2 cut(s) | 132, 1618 |
| Eco47I | GGWCC | 2 cut(s) | 1325, 2291 |
| Eco57I | CTGAAG | 3 cut(s) | 905, 948, 1065 |
| Eco72I | CACGTG | 1 cut(s) | 1961 |
| EcoRII | CCWGG | 6 cut(s) | 95, 1208, 1297, 1755, 1803, 1901 |
| EcoT14I | CCWWGG | 3 cut(s) | 808, 1336, 1498 |
| EcoT22I | ATGCAT | 1 cut(s) | 1513 |
| EcoT38I | GRGCYC | 2 cut(s) | 132, 1618 |
| ErhI | CCWWGG | 3 cut(s) | 808, 1336, 1498 |
| Esp3I | CGTCTC | 1 cut(s) | 1904 |
| FaeI | CATG | 8 cut(s) | 819, 872, 1013, 1335, 1420, 1534, 1561, 2021 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 921, 953 |
| FaqI | GGGAC | 2 cut(s) | 1530, 2134 |
| FatI | CATG | 8 cut(s) | 815, 868, 1009, 1331, 1416, 1530, 1557, 2017 |
| FauI | CCCGC | 1 cut(s) | 1239 |
| FauNDI | CATATG | 1 cut(s) | 1573 |
| FbaI | TGATCA | 1 cut(s) | 1921 |
| FblI | GTMKAC | 4 cut(s) | 794, 1681, 2055, 2257 |
| Fnu4HI | GCNGC | 4 cut(s) | 83, 1563, 1880, 1883 |
| FokI | GGATG | 7 cut(s) | 299, 882, 1322, 1775, 1820, 2168, 2199 |
| FriOI | GRGCYC | 2 cut(s) | 132, 1618 |
| Fsp4HI | GCNGC | 4 cut(s) | 83, 1563, 1880, 1883 |
| FspBI | CTAG | 8 cut(s) | 258, 365, 741, 764, 1118, 1739, 1970, 2009 |
| GlaI | GCGC | 2 cut(s) | 426, 787 |
| GluI | GCNGC | 4 cut(s) | 83, 1563, 1880, 1883 |
| GsaI | CCCAGC | 1 cut(s) | 1569 |
| GsuI | CTGGAG | 1 cut(s) | 712 |
| HaeIII | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1621, 2186 |
| HapII | CCGG | 5 cut(s) | 125, 666, 1177, 1618, 2438 |
| HgaI | GACGC | 3 cut(s) | 173, 323, 1921 |
| HhaI | GCGC | 2 cut(s) | 427, 788 |
| Hin1I | GRCGYC | 1 cut(s) | 1519 |
| Hin1II | CATG | 8 cut(s) | 819, 872, 1013, 1335, 1420, 1534, 1561, 2021 |
| Hin6I | GCGC | 2 cut(s) | 425, 786 |
| HinP1I | GCGC | 2 cut(s) | 425, 786 |
| HincII | GTYRAC | 3 cut(s) | 93, 795, 1471 |
| HindII | GTYRAC | 3 cut(s) | 93, 795, 1471 |
| HindIII | AAGCTT | 3 cut(s) | 524, 1086, 2282 |
| HpaI | GTTAAC | 1 cut(s) | 93 |
| HpaII | CCGG | 5 cut(s) | 125, 666, 1177, 1618, 2438 |
| HphI | GGTGA | 3 cut(s) | 128, 1145, 1313 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 167 |
| HpyAV | CCTTC | 3 cut(s) | 55, 524, 1177 |
| HpyCH4III | ACNGT | 5 cut(s) | 436, 1169, 1708, 2164, 2173 |
| HpyCH4IV | ACGT | 5 cut(s) | 321, 1449, 1519, 1960, 2254 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 821, 1568 |
| HpyF3I | CTNAG | 7 cut(s) | 518, 1229, 1626, 1862, 1977, 2285, 2418 |
| HpySE526I | ACGT | 5 cut(s) | 321, 1449, 1519, 1960, 2254 |
| Hsp92I | GRCGYC | 1 cut(s) | 1519 |
| Hsp92II | CATG | 8 cut(s) | 819, 872, 1013, 1335, 1420, 1534, 1561, 2021 |
| HspAI | GCGC | 2 cut(s) | 425, 786 |
| Kpn2I | TCCGGA | 1 cut(s) | 2437 |
| KpnI | GGTACC | 1 cut(s) | 2093 |
| Ksp22I | TGATCA | 1 cut(s) | 1921 |
| KspAI | GTTAAC | 1 cut(s) | 93 |
| LguI | GCTCTTC | 1 cut(s) | 1757 |
| LmnI | GCTCC | 5 cut(s) | 127, 731, 1213, 1613, 2440 |
| Lsp1109I | GCAGC | 4 cut(s) | 94, 1574, 1866, 1894 |
| LweI | GCATC | 7 cut(s) | 50, 195, 978, 1183, 1563, 1753, 2221 |
| MabI | ACCWGGT | 1 cut(s) | 1297 |
| MaeI | CTAG | 8 cut(s) | 258, 365, 741, 764, 1118, 1739, 1970, 2009 |
| MaeII | ACGT | 5 cut(s) | 321, 1449, 1519, 1960, 2254 |
| MaeIII | GTNAC | 5 cut(s) | 116, 263, 618, 838, 2176 |
| MbiI | CCGCTC | 1 cut(s) | 1246 |
| MfeI | CAATTG | 2 cut(s) | 381, 1403 |
| MflI | RGATCY | 5 cut(s) | 460, 1173, 1375, 2002, 2044 |
| MhlI | GDGCHC | 2 cut(s) | 132, 1618 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 746, 1240, 1854 |
| MmeI | TCCRAC | 3 cut(s) | 88, 967, 1676 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 1513 |
| MroI | TCCGGA | 1 cut(s) | 2437 |
| MroXI | GAANNNNTTC | 3 cut(s) | 513, 933, 1412 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 2 cut(s) | 873, 2022 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 1565 |
| MspCI | CTTAAG | 1 cut(s) | 1436 |
| MspI | CCGG | 5 cut(s) | 125, 666, 1177, 1618, 2438 |
| MspR9I | CCNGG | 8 cut(s) | 97, 125, 1210, 1299, 1618, 1757, 1805, 1903 |
| MunI | CAATTG | 2 cut(s) | 381, 1403 |
| Mva1269I | GAATGC | 3 cut(s) | 28, 515, 2254 |
| MvaI | CCWGG | 6 cut(s) | 97, 1210, 1299, 1757, 1805, 1903 |
| MvnI | CGCG | 1 cut(s) | 427 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 821, 1568 |
| NciI | CCSGG | 2 cut(s) | 125, 1618 |
| NdeI | CATATG | 1 cut(s) | 1573 |
| NlaIII | CATG | 8 cut(s) | 819, 872, 1013, 1335, 1420, 1534, 1561, 2021 |
| NlaIV | GGNNCC | 7 cut(s) | 129, 1215, 1496, 1615, 1827, 2046, 2091 |
| NmeAIII | GCCGAG | 2 cut(s) | 17, 2212 |
| NmuCI | GTSAC | 2 cut(s) | 116, 263 |
| NsiI | ATGCAT | 1 cut(s) | 1513 |
| NspI | RCATGY | 2 cut(s) | 819, 872 |
| NspV | TTCGAA | 1 cut(s) | 56 |
| PaeI | GCATGC | 1 cut(s) | 872 |
| PciSI | GCTCTTC | 1 cut(s) | 1757 |
| PctI | GAATGC | 3 cut(s) | 28, 515, 2254 |
| PdmI | GAANNNNTTC | 3 cut(s) | 513, 933, 1412 |
| PfeI | GAWTC | 8 cut(s) | 53, 487, 580, 920, 998, 2072, 2206, 2446 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PkrI | GCNGC | 4 cut(s) | 84, 1564, 1881, 1884 |
| PleI | GAGTC | 3 cut(s) | 745, 1239, 1854 |
| PmaCI | CACGTG | 1 cut(s) | 1961 |
| PmlI | CACGTG | 1 cut(s) | 1961 |
| PpsI | GAGTC | 3 cut(s) | 745, 1239, 1854 |
| Ppu21I | YACGTR | 2 cut(s) | 322, 1961 |
| Psp6I | CCWGG | 6 cut(s) | 95, 1208, 1297, 1755, 1803, 1901 |
| PspCI | CACGTG | 1 cut(s) | 1961 |
| PspFI | CCCAGC | 1 cut(s) | 1565 |
| PspGI | CCWGG | 6 cut(s) | 95, 1208, 1297, 1755, 1803, 1901 |
| PspN4I | GGNNCC | 7 cut(s) | 129, 1215, 1496, 1615, 1827, 2046, 2091 |
| PspPI | GGNCC | 6 cut(s) | 122, 143, 180, 1325, 2184, 2291 |
| PstI | CTGCAG | 1 cut(s) | 1884 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2339 |
| PsuI | RGATCY | 5 cut(s) | 460, 1173, 1375, 2002, 2044 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| PvuII | CAGCTG | 1 cut(s) | 1565 |
| RseI | CAYNNNNRTG | 2 cut(s) | 873, 2022 |
| SalI | GTCGAC | 1 cut(s) | 793 |
| SapI | GCTCTTC | 1 cut(s) | 1757 |
| SatI | GCNGC | 4 cut(s) | 83, 1563, 1880, 1883 |
| Sau96I | GGNCC | 6 cut(s) | 122, 143, 180, 1325, 2184, 2291 |
| ScaI | AGTACT | 1 cut(s) | 1116 |
| SchI | GAGTC | 3 cut(s) | 746, 1240, 1854 |
| ScrFI | CCNGG | 8 cut(s) | 97, 125, 1210, 1299, 1618, 1757, 1805, 1903 |
| SduI | GDGCHC | 2 cut(s) | 132, 1618 |
| SexAI | ACCWGGT | 1 cut(s) | 1297 |
| SfaNI | GCATC | 7 cut(s) | 50, 195, 978, 1183, 1563, 1753, 2221 |
| SfcI | CTRYAG | 1 cut(s) | 1880 |
| SfuI | TTCGAA | 1 cut(s) | 56 |
| SinI | GGWCC | 2 cut(s) | 1325, 2291 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 873, 2022 |
| SmlI | CTYRAG | 1 cut(s) | 1436 |
| SmoI | CTYRAG | 1 cut(s) | 1436 |
| SphI | GCATGC | 1 cut(s) | 872 |
| SsiI | CCGC | 7 cut(s) | 13, 149, 684, 1246, 1583, 1760, 2375 |
| SspI | AATATT | 2 cut(s) | 532, 614 |
| SspMI | CTAG | 8 cut(s) | 258, 365, 741, 764, 1118, 1739, 1970, 2009 |
| StyD4I | CCNGG | 8 cut(s) | 95, 123, 1208, 1297, 1616, 1755, 1803, 1901 |
| StyI | CCWWGG | 3 cut(s) | 808, 1336, 1498 |
| TaaI | ACNGT | 5 cut(s) | 436, 1169, 1708, 2164, 2173 |
| TaiI | ACGT | 5 cut(s) | 324, 1452, 1522, 1963, 2257 |
| TaqI | TCGA | 2 cut(s) | 56, 794 |
| TatI | WGTACW | 3 cut(s) | 227, 1114, 1164 |
| TfiI | GAWTC | 8 cut(s) | 53, 487, 580, 920, 998, 2072, 2206, 2446 |
| TscAI | CASTG | 3 cut(s) | 382, 1081, 1900 |
| TseFI | GTSAC | 2 cut(s) | 116, 263 |
| TseI | GCWGC | 4 cut(s) | 82, 1562, 1879, 1882 |
| Tsp45I | GTSAC | 2 cut(s) | 116, 263 |
| TspGWI | ACGGA | 1 cut(s) | 1920 |
| TspRI | CASTG | 3 cut(s) | 382, 1081, 1900 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| Vha464I | CTTAAG | 1 cut(s) | 1436 |
| VpaK11BI | GGWCC | 2 cut(s) | 1325, 2291 |
| XapI | RAATTY | 5 cut(s) | 244, 368, 471, 1481, 1691 |
| XbaI | TCTAGA | 1 cut(s) | 364 |
| XceI | RCATGY | 2 cut(s) | 819, 872 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 280, 1343 |
| XmiI | GTMKAC | 4 cut(s) | 794, 1681, 2055, 2257 |
| XmnI | GAANNNNTTC | 3 cut(s) | 513, 933, 1412 |
| XspI | CTAG | 8 cut(s) | 258, 365, 741, 764, 1118, 1739, 1970, 2009 |
| ZraI | GACGTC | 1 cut(s) | 1520 |
| ZrmI | AGTACT | 1 cut(s) | 1116 |
| Zsp2I | ATGCAT | 1 cut(s) | 1513 |