Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

825005 .. 830501

Gene Structure 5497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1011100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGGCTTGCAAGCGGAAGGCGAAGGCCGGAACCTCTTCAGGTTCTCCCCCGGAATCGAAGAAGCTGAGGCAAACCGAGGAGGCGAGAGTTGAAGAGGAGGTAGCAACGACTGTGGATAAAGCTGCTTCTCCGCCGAGGAACCCTGTGACTCAGGAGGTAGCTGCGGCTGATGATGACGGAGAGGAAGCGAGGTTTCTTGGCGAACCGATGGAAGACGAGGAGGCTCGTAAGCAATACCCCAAGAGATATGTTGGAAAGAAGCCAAAGATGAATGGGCAAAACAACTCCAACGATGATGAAGATATAATTCAAGCTCGTTGTCACTACACAAAGGCGTTGGTAGATGGAATCAATTATGACCTCTATGATGATGCCCATGTATTTTCAGGGGAGAAAGAAGAGCCATACATTTGTAAGATTGTGGAAATGTTTGAGGCAATTGGTGGGCTATTGTATTTTACTGCACAATGGTACTATAGATCACGAGACACTGTCATAAAGCACTGTACTACTGTTGCTTGTGGGCGTGTATTCTTTTCAGATGTCCGAGACGATAACCCTCTGAATTGTCTTGTTGAAAAACTTCATATTGTTAGACTGACACTAAATGTTGATGAAGATTTGAAGAGTAAATCAATTCCGGTGTGCAATTACTATTGTGACACCAAGTACCTGCTACCGTATTCTACTTTTGTCAATCTGCCGGCAGAAAATATGCAGACTGGAAGTGATGACTCAACTATCTCTGTTGAGGATGATGTTTGTTTGGATAGCGAGGTTGATTCAAAGCTGCCAAATGGAGAGCGTGCCAAATCAGAAGTAAGGCTCTTAGACCTATATTCTGGTTGCGGAGCGATGTCTACTGGCCTGTGCCTTGGTGCACATTTGGCCAATGTCAATCTTGTTACAAGATGGGCTGTTGACTACAATAAGTACGCTTGTAAGAGTTTGGCACAAAACCATCCAGAGACAGAGGTTCGAAATGAAGCTGCTGAAGATTTTCTCACAATGCTCAAGGCATGGAGAAAACTATGCATGTGTTTAAAGTTGGTTGAGAATGACAATTTAGAGGAGGATGTAGATAAGAGTATACTTGATTTCTTTGGAAAGGAAGATGATGAAGAGGAAGAGGAGGATGAAGAAGAGGAAGATGTTAGTGGAAATGTCAAGAATGATTCTGAAGTTTTTGAAGTTGATTGCGTCATAGGAGTATGTTTTGGTGACCCCAAAAAAACAGAAAAGAAGGGAATATACTTTAAGATTCATTGGAAGGGCTACGGGCCTGCGGAAGACACCTGGGAGCCAATGAATGAATTGGAGCATTGTAAGCAGGCTATCAAAAAATTTATTACTGAAGGTTACAGATTGAAAAAATTGCCTTTACCGGGTGATGTTGATGTGGTGTGTGGGGGACCCCCTTGCCAAGGAGTTAGTGGTTTCAACAGATTTAGGAACACAGAAAGTCCATTAGCAGATGACAAAAACCAACAGTTAGAGGTGTACATGGACATAGTTCGGTACCTAAAGCCAAAATTTGTTTTAATGGAAAACGTTGTCGATATTTTAAAATTTGCCGATGGATTCCTTGGACGATATGCCTTGGGACGCCTTGTAGATATGAACTATCAAGTGAGGATGGGAATGATGGCAGCAGGTGCATATGGGCTTCCGCAGTTCCGTATGCGAGTTTTTTTGTGGGGGGCGCGTCCTACTGAGATCTTGCCCCAGTACCCACTTCCTACACATGACGTTGTTTCAAGGGGTGTTACTCCTACACAGTTTGAGGGGAATGCCGTTGCTTATGATGAAGGTCATCAGACCCAATTAGGAAAAAGTCTTTTTCTGGATGATGCGATTTCCGATCTGCCTGCTGTTGCAAATAATGAAGAAAGAGACGAGATGCCTTATGGGGTGGCACCCAAGACAGAGTTTCAGAGGCTTATTAGACTAAGCAAAGAATACCTAATGGGGACTTCAAAGGACAACTCTATACAAAACGTTCTTTATGATCATCGCCCTCTTCAGTTGAATCCCGATGATTATGCACGTGTTTGTGAAGTTCCCAAGAGAAAGGGTGCATGCTTCAGAGATCTTCCAGGTGTTCGTGTGCGTGGTGATAACAAGGTTGAGTGGGATCCAGAAGTACCCAGGGTGTATTTGGCTTCTGGCAAACCGTTGATCCCAGATTATGCTATGAGTTTTGTGAATGGGTCTTCATCGAAACCTTTTGCCCGTTTGTGGTGGGACGAAACTGTGCCAACAGTGGTCACAAGAGCTGAACCTCATAACCAGGCAATTATGCATCCTGAACAAGATAGGGTGCTGACAATTCGTGAGAATGCCAGGCTACAAGGCTTTCCGGATTTTTACAAGCTCAGCGGGCCTATAAAAGAAAGGTACATGCAGGTTGGAAATGCTGTTGCTGTTCCTGTTGCGCGTGCACTGGGCTATGCATTAGGTCTTGCTCTTAAAGGTTCTGCTGGTGCTGATCCCCTTTTTAAACTGCCTGCAAATTTCCCTAACCTTCAAGATCAGGTTCATTCGGCATCCTCTGAAGAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

856

Amino Acids

96.31

Weight (kDa)

4.97

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	129 - 205	1.2e-06	BAH domain
Chromo	PF00385	397 - 450	9.2e-11	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	460 - 818	9e-34	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1643
Acc36I	ACCTGC	3 cut(s)	681, 1643, 2395
Acc65I	GGTACC	1 cut(s)	1518
AccB1I	GGYRCC	2 cut(s)	1518, 1915
AccI	GTMKAC	2 cut(s)	860, 1090
AccII	CGCG	2 cut(s)	1705, 2437
AccIII	TCCGGA	1 cut(s)	2359
AciI	CCGC	7 cut(s)	13, 131, 164, 849, 1286, 1670, 2379
AclI	AACGTT	2 cut(s)	1551, 1998
AclWI	GGATC	4 cut(s)	2129, 2142, 2173, 2483
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	4 cut(s)	1343, 1532, 1568, 2512
AcuI	CTGAAG	6 cut(s)	21, 1014, 1200, 1374, 2006, 2068
AcvI	CACGTG	1 cut(s)	2048
AcyI	GRCGYC	1 cut(s)	1606
AfaI	GTAC	9 cut(s)	473, 508, 671, 935, 1502, 1520, 1730, 2145, 2399
AfiI	CCNNNNNNNGG	3 cut(s)	1385, 1424, 2238
AflIII	ACRYGT	1 cut(s)	2047
AjnI	CCWGG	5 cut(s)	1295, 2095, 2147, 2289, 2342
AluBI	AGCT	8 cut(s)	64, 122, 161, 314, 790, 989, 2276, 2374
AluI	AGCT	8 cut(s)	64, 122, 161, 314, 790, 989, 2276, 2374
Alw21I	GWGCWC	2 cut(s)	883, 2443
Alw26I	GTCTC	4 cut(s)	480, 543, 962, 1887
Alw44I	GTGCAC	2 cut(s)	879, 2439
AlwI	GGATC	4 cut(s)	2129, 2142, 2173, 2483
Aor13HI	TCCGGA	1 cut(s)	2359
AoxI	GGCC	5 cut(s)	24, 865, 888, 1280, 2381
ApaLI	GTGCAC	2 cut(s)	879, 2439
ApeKI	GCWGC	5 cut(s)	122, 161, 790, 989, 1649
ApoI	RAATTY	4 cut(s)	1343, 1532, 1568, 2512
Asp700I	GAANNNNTTC	3 cut(s)	34, 582, 999
Asp718I	GGTACC	1 cut(s)	1518
AspLEI	GCGC	2 cut(s)	1705, 2437
AspS9I	GGNCC	3 cut(s)	1280, 1412, 2381
AsuC2I	CCSGG	2 cut(s)	50, 1386
AsuHPI	GGTGA	3 cut(s)	1232, 1400, 2126
AsuII	TTCGAA	1 cut(s)	979
AvaII	GGWCC	1 cut(s)	1412
BaeGI	GKGCMC	2 cut(s)	883, 2443
BalI	TGGCCA	1 cut(s)	890
BamHI	GGATCC	1 cut(s)	2134
BanI	GGYRCC	2 cut(s)	1518, 1915
BarI	GAAGNNNNNNTAC	2 cut(s)	1235, 1267
BauI	CACGAG	1 cut(s)	483
BbrPI	CACGTG	1 cut(s)	2048
BbsI	GAAGAC	3 cut(s)	219, 1296, 2205
Bbv12I	GWGCWC	2 cut(s)	883, 2443
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	109, 148, 777, 976, 1661
BccI	CCATC	7 cut(s)	202, 338, 906, 969, 1571, 1630, 1639
BceAI	ACGGC	1 cut(s)	1778
BcgI	CGANNNNNNTGC	4 cut(s)	1850, 1884, 2024, 2058
BciT130I	CCWGG	5 cut(s)	1297, 2097, 2149, 2291, 2344
BclI	TGATCA	1 cut(s)	2008
BcnI	CCSGG	2 cut(s)	50, 1386
BcoDI	GTCTC	4 cut(s)	480, 543, 962, 1887
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	3 cut(s)	681, 1643, 2395
BglII	AGATCT	2 cut(s)	1716, 2089
BisI	GCNGC	6 cut(s)	123, 162, 165, 791, 990, 1650
BlpI	GCTNAGC	1 cut(s)	2375
BlsI	GCNGC	6 cut(s)	124, 163, 166, 792, 991, 1651
Bme1390I	CCNGG	7 cut(s)	50, 1297, 1386, 2097, 2149, 2291, 2344
Bme18I	GGWCC	1 cut(s)	1412
BmgT120I	GGNCC	3 cut(s)	1280, 1412, 2381
BmiI	GGNNCC	8 cut(s)	31, 140, 1302, 1413, 1414, 1520, 1917, 2136
BmrFI	CCNGG	7 cut(s)	50, 1297, 1386, 2097, 2149, 2291, 2344
BmrI	ACTGGG	2 cut(s)	1720, 2453
BmsI	GCATC	5 cut(s)	361, 1840, 1890, 2311, 2555
BmuI	ACTGGG	2 cut(s)	1720, 2453
BpiI	GAAGAC	3 cut(s)	219, 1296, 2205
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	2375
Bpu14I	TTCGAA	1 cut(s)	979
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	2 cut(s)	50, 1386
BsaAI	YACGTR	1 cut(s)	2048
BsaHI	GRCGYC	1 cut(s)	1606
BsaWI	WCCGGW	2 cut(s)	640, 2359
Bsc4I	CCNNNNNNNGG	3 cut(s)	1385, 1424, 2238
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	4 cut(s)	727, 868, 1726, 2448
BseAI	TCCGGA	1 cut(s)	2359
BseBI	CCWGG	5 cut(s)	1297, 2097, 2149, 2291, 2344
BseGI	GGATG	8 cut(s)	760, 961, 1081, 1141, 1641, 1852, 2302, 2546
BseLI	CCNNNNNNNGG	3 cut(s)	1385, 1424, 2238
BseMII	CTCAG	4 cut(s)	56, 164, 1704, 2389
BseNI	ACTGG	4 cut(s)	727, 868, 1726, 2448
BseRI	GAGGAG	5 cut(s)	92, 110, 233, 1085, 1145
BseSI	GKGCMC	2 cut(s)	883, 2443
BseXI	GCAGC	5 cut(s)	109, 148, 777, 976, 1661
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	1705, 2437
BshFI	GGCC	5 cut(s)	26, 867, 890, 1282, 2383
BshNI	GGYRCC	2 cut(s)	1518, 1915
BsiHKAI	GWGCWC	2 cut(s)	883, 2443
BsiSI	CCGG	6 cut(s)	27, 50, 641, 704, 1385, 2360
BslFI	GGGAC	4 cut(s)	1425, 1617, 1984, 2258
BslI	CCNNNNNNNGG	3 cut(s)	1385, 1424, 2238
BsmAI	GTCTC	4 cut(s)	480, 543, 962, 1887
BsmBI	CGTCTC	2 cut(s)	543, 1887
BsmFI	GGGAC	4 cut(s)	1425, 1617, 1984, 2258
BsmI	GAATGC	2 cut(s)	1795, 2344
BsnI	GGCC	5 cut(s)	26, 867, 890, 1282, 2383
Bsp119I	TTCGAA	1 cut(s)	979
Bsp1286I	GDGCHC	2 cut(s)	883, 2443
Bsp13I	TCCGGA	1 cut(s)	2359
Bsp1407I	TGTACA	1 cut(s)	1500
Bsp143I	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
Bsp1720I	GCTNAGC	1 cut(s)	2375
BspACI	CCGC	7 cut(s)	13, 131, 164, 849, 1286, 1670, 2379
BspANI	GGCC	5 cut(s)	26, 867, 890, 1282, 2383
BspCNI	CTCAG	4 cut(s)	57, 163, 1705, 2388
BspEI	TCCGGA	1 cut(s)	2359
BspFNI	CGCG	2 cut(s)	1705, 2437
BspLI	GGNNCC	8 cut(s)	31, 140, 1302, 1413, 1414, 1520, 1917, 2136
BspMI	ACCTGC	3 cut(s)	681, 1643, 2395
BspPI	GGATC	4 cut(s)	2129, 2142, 2173, 2483
BspQI	GCTCTTC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	979
BspT107I	GGYRCC	2 cut(s)	1518, 1915
BsrFI	RCCGGY	1 cut(s)	703
BsrGI	TGTACA	1 cut(s)	1500
BsrI	ACTGG	4 cut(s)	727, 868, 1726, 2448
BssAI	RCCGGY	1 cut(s)	703
BssMI	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
BssNAI	GTATAC	1 cut(s)	1091
BssNI	GRCGYC	1 cut(s)	1606
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	4 cut(s)	874, 1423, 1585, 1599
Bst1107I	GTATAC	1 cut(s)	1091
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	5 cut(s)	1297, 2097, 2149, 2291, 2344
Bst6I	CTCTTC	9 cut(s)	40, 87, 393, 620, 1116, 1122, 1137, 2025, 2550
BstACI	GRCGYC	1 cut(s)	1606
BstAPI	GCANNNNNTGC	1 cut(s)	1655
BstAUI	TGTACA	1 cut(s)	1500
BstBAI	YACGTR	1 cut(s)	2048
BstBI	TTCGAA	1 cut(s)	979
BstDEI	CTNAG	6 cut(s)	65, 150, 829, 1713, 1949, 2375
BstEII	GGTNACC	1 cut(s)	1220
BstENI	CCTNNNNNAGG	1 cut(s)	1422
BstF5I	GGATG	8 cut(s)	760, 961, 1081, 1141, 1641, 1852, 2302, 2546
BstFNI	CGCG	2 cut(s)	1705, 2437
BstHHI	GCGC	2 cut(s)	1705, 2437
BstKTI	GATC	9 cut(s)	482, 1719, 1864, 2011, 2092, 2137, 2181, 2491, 2533
BstMAI	GTCTC	4 cut(s)	480, 543, 962, 1887
BstMBI	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
BstMWI	GCNNNNNNNGC	4 cut(s)	887, 1327, 1655, 2380
BstNI	CCWGG	5 cut(s)	1297, 2097, 2149, 2291, 2344
BstNSI	RCATGY	3 cut(s)	1039, 2082, 2404
BstPI	GGTNACC	1 cut(s)	1220
BstSCI	CCNGG	7 cut(s)	48, 1295, 1384, 2095, 2147, 2289, 2342
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	2 cut(s)	883, 2443
BstUI	CGCG	2 cut(s)	1705, 2437
BstV1I	GCAGC	5 cut(s)	109, 148, 777, 976, 1661
BstV2I	GAAGAC	3 cut(s)	219, 1296, 2205
BstX2I	RGATCY	3 cut(s)	1716, 2089, 2134
BstYI	RGATCY	3 cut(s)	1716, 2089, 2134
BstZ17I	GTATAC	1 cut(s)	1091
BsuRI	GGCC	5 cut(s)	26, 867, 890, 1282, 2383
BtgZI	GCGATG	2 cut(s)	869, 1997
BtsCI	GGATG	8 cut(s)	760, 961, 1081, 1141, 1641, 1852, 2302, 2546
BtsIMutI	CAGTG	4 cut(s)	489, 502, 2268, 2441
BveI	ACCTGC	3 cut(s)	681, 1643, 2395
CfoI	GCGC	2 cut(s)	1705, 2437
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	3 cut(s)	1280, 1412, 2381
CseI	GACGC	3 cut(s)	1189, 1614, 1694
Csp6I	GTAC	9 cut(s)	472, 507, 670, 934, 1501, 1519, 1729, 2144, 2398
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	7 cut(s)	377, 1020, 1036, 1504, 1745, 2079, 2401
CviQI	GTAC	9 cut(s)	472, 507, 670, 934, 1501, 1519, 1729, 2144, 2398
DdeI	CTNAG	6 cut(s)	65, 150, 829, 1713, 1949, 2375
DpnI	GATC	9 cut(s)	481, 1718, 1863, 2010, 2091, 2136, 2180, 2490, 2532
DpnII	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
DraI	TTTAAA	3 cut(s)	1044, 1566, 2500
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	9 cut(s)	40, 87, 393, 620, 1116, 1122, 1137, 2025, 2550
EarI	CTCTTC	9 cut(s)	40, 87, 393, 620, 1116, 1122, 1137, 2025, 2550
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	4 cut(s)	874, 1423, 1585, 1599
Eco47I	GGWCC	1 cut(s)	1412
Eco57I	CTGAAG	6 cut(s)	21, 1014, 1200, 1374, 2006, 2068
Eco72I	CACGTG	1 cut(s)	2048
Eco91I	GGTNACC	1 cut(s)	1220
EcoNI	CCTNNNNNAGG	1 cut(s)	1422
EcoO109I	RGGNCCY	1 cut(s)	1412
EcoO65I	GGTNACC	1 cut(s)	1220
EcoRII	CCWGG	5 cut(s)	1295, 2095, 2147, 2289, 2342
EcoT14I	CCWWGG	4 cut(s)	874, 1423, 1585, 1599
EcoT22I	ATGCAT	3 cut(s)	1037, 2304, 2455
ErhI	CCWWGG	4 cut(s)	874, 1423, 1585, 1599
Esp3I	CGTCTC	2 cut(s)	543, 1887
FaeI	CATG	7 cut(s)	380, 1023, 1039, 1507, 1748, 2082, 2404
FaqI	GGGAC	4 cut(s)	1425, 1617, 1984, 2258
FatI	CATG	7 cut(s)	376, 1019, 1035, 1503, 1744, 2078, 2400
FauI	CCCGC	1 cut(s)	2372
FauNDI	CATATG	1 cut(s)	1660
FbaI	TGATCA	1 cut(s)	2008
FblI	GTMKAC	2 cut(s)	860, 1090
Fnu4HI	GCNGC	6 cut(s)	123, 162, 165, 791, 990, 1650
FokI	GGATG	8 cut(s)	767, 948, 1088, 1148, 1648, 1859, 2289, 2533
Fsp4HI	GCNGC	6 cut(s)	123, 162, 165, 791, 990, 1650
GlaI	GCGC	2 cut(s)	1704, 2436
GluI	GCNGC	6 cut(s)	123, 162, 165, 791, 990, 1650
HaeIII	GGCC	5 cut(s)	26, 867, 890, 1282, 2383
HapII	CCGG	6 cut(s)	27, 50, 641, 704, 1385, 2360
HgaI	GACGC	3 cut(s)	1189, 1614, 1694
HhaI	GCGC	2 cut(s)	1705, 2437
Hin1I	GRCGYC	1 cut(s)	1606
Hin1II	CATG	7 cut(s)	380, 1023, 1039, 1507, 1748, 2082, 2404
Hin6I	GCGC	2 cut(s)	1703, 2435
HinP1I	GCGC	2 cut(s)	1703, 2435
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HinfI	GANTC	9 cut(s)	53, 148, 348, 734, 782, 1175, 1261, 1581, 2029
HpaII	CCGG	6 cut(s)	27, 50, 641, 704, 1385, 2360
HphI	GGTGA	3 cut(s)	1232, 1400, 2126
Hpy166II	GTNNAC	6 cut(s)	861, 881, 922, 1091, 1501, 2441
Hpy8I	GTNNAC	6 cut(s)	861, 881, 922, 1091, 1501, 2441
HpyAV	CCTTC	7 cut(s)	10, 16, 1237, 1264, 1349, 1802, 2534
HpyCH4IV	ACGT	4 cut(s)	1551, 1749, 1998, 2047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	887, 1327, 1655, 2380
HpyF3I	CTNAG	6 cut(s)	65, 150, 829, 1713, 1949, 2375
HpySE526I	ACGT	4 cut(s)	1551, 1749, 1998, 2047
Hsp92I	GRCGYC	1 cut(s)	1606
Hsp92II	CATG	7 cut(s)	380, 1023, 1039, 1507, 1748, 2082, 2404
HspAI	GCGC	2 cut(s)	1703, 2435
KflI	GGGWCCC	1 cut(s)	1412
Kpn2I	TCCGGA	1 cut(s)	2359
KpnI	GGTACC	1 cut(s)	1522
KroI	GCCGGC	1 cut(s)	703
KroNI	GCCGGC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	2008
Kzo9I	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	3 cut(s)	851, 1300, 1318
Lsp1109I	GCAGC	5 cut(s)	109, 148, 777, 976, 1661
LweI	GCATC	5 cut(s)	361, 1840, 1890, 2311, 2555
MaeII	ACGT	4 cut(s)	1551, 1749, 1998, 2047
MaeIII	GTNAC	8 cut(s)	145, 320, 659, 904, 1220, 1358, 1765, 2266
MalI	GATC	9 cut(s)	481, 1718, 1863, 2010, 2091, 2136, 2180, 2490, 2532
MboI	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	3 cut(s)	1716, 2089, 2134
MhlI	GDGCHC	2 cut(s)	883, 2443
MlsI	TGGCCA	1 cut(s)	890
MluNI	TGGCCA	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	142, 728
MmeI	TCCRAC	3 cut(s)	232, 312, 2389
Mox20I	TGGCCA	1 cut(s)	890
Mph1103I	ATGCAT	3 cut(s)	1037, 2304, 2455
MroI	TCCGGA	1 cut(s)	2359
MroNI	GCCGGC	1 cut(s)	703
MroXI	GAANNNNTTC	3 cut(s)	34, 582, 999
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	6 cut(s)	1043, 1257, 1541, 1565, 2469, 2499
Msp20I	TGGCCA	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	2379
MspI	CCGG	6 cut(s)	27, 50, 641, 704, 1385, 2360
MspR9I	CCNGG	7 cut(s)	50, 1297, 1386, 2097, 2149, 2291, 2344
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	1795, 2344
MvaI	CCWGG	5 cut(s)	1297, 2097, 2149, 2291, 2344
MvnI	CGCG	2 cut(s)	1705, 2437
MwoI	GCNNNNNNNGC	4 cut(s)	887, 1327, 1655, 2380
NaeI	GCCGGC	1 cut(s)	705
NciI	CCSGG	2 cut(s)	50, 1386
NdeI	CATATG	1 cut(s)	1660
NdeII	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
NgoMIV	GCCGGC	1 cut(s)	703
NlaIII	CATG	7 cut(s)	380, 1023, 1039, 1507, 1748, 2082, 2404
NlaIV	GGNNCC	8 cut(s)	31, 140, 1302, 1413, 1414, 1520, 1917, 2136
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	5 cut(s)	145, 320, 659, 1220, 2266
NsiI	ATGCAT	3 cut(s)	1037, 2304, 2455
NspI	RCATGY	3 cut(s)	1039, 2082, 2404
NspV	TTCGAA	1 cut(s)	979
PaeI	GCATGC	1 cut(s)	2082
PaqCI	CACCTGC	1 cut(s)	1643
PasI	CCCWGGG	1 cut(s)	2148
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	2 cut(s)	1795, 2344
PdiI	GCCGGC	1 cut(s)	705
PdmI	GAANNNNTTC	3 cut(s)	34, 582, 999
PfeI	GAWTC	7 cut(s)	53, 348, 782, 1175, 1261, 1581, 2029
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	6 cut(s)	124, 163, 166, 792, 991, 1651
PleI	GAGTC	2 cut(s)	142, 728
PmaCI	CACGTG	1 cut(s)	2048
PmlI	CACGTG	1 cut(s)	2048
PpsI	GAGTC	2 cut(s)	142, 728
Ppu21I	YACGTR	1 cut(s)	2048
PpuMI	RGGWCCY	1 cut(s)	1412
Psp1406I	AACGTT	2 cut(s)	1551, 1998
Psp5II	RGGWCCY	1 cut(s)	1412
Psp6I	CCWGG	5 cut(s)	1295, 2095, 2147, 2289, 2342
PspCI	CACGTG	1 cut(s)	2048
PspEI	GGTNACC	1 cut(s)	1220
PspGI	CCWGG	5 cut(s)	1295, 2095, 2147, 2289, 2342
PspN4I	GGNNCC	8 cut(s)	31, 140, 1302, 1413, 1414, 1520, 1917, 2136
PspPI	GGNCC	3 cut(s)	1280, 1412, 2381
PspPPI	RGGWCCY	1 cut(s)	1412
PsuI	RGATCY	3 cut(s)	1716, 2089, 2134
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	9 cut(s)	473, 508, 671, 935, 1502, 1520, 1730, 2145, 2399
RsaNI	GTAC	9 cut(s)	472, 507, 670, 934, 1501, 1519, 1729, 2144, 2398
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	6 cut(s)	1043, 1257, 1541, 1565, 2469, 2499
SatI	GCNGC	6 cut(s)	123, 162, 165, 791, 990, 1650
Sau3AI	GATC	9 cut(s)	479, 1716, 1861, 2008, 2089, 2134, 2178, 2488, 2530
Sau96I	GGNCC	3 cut(s)	1280, 1412, 2381
SchI	GAGTC	2 cut(s)	142, 728
ScrFI	CCNGG	7 cut(s)	50, 1297, 1386, 2097, 2149, 2291, 2344
SduI	GDGCHC	2 cut(s)	883, 2443
SfaNI	GCATC	5 cut(s)	361, 1840, 1890, 2311, 2555
SfcI	CTRYAG	1 cut(s)	475
SfuI	TTCGAA	1 cut(s)	979
SinI	GGWCC	1 cut(s)	1412
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	2082
SsiI	CCGC	7 cut(s)	13, 131, 164, 849, 1286, 1670, 2379
StyD4I	CCNGG	7 cut(s)	48, 1295, 1384, 2095, 2147, 2289, 2342
StyI	CCWWGG	4 cut(s)	874, 1423, 1585, 1599
TaiI	ACGT	4 cut(s)	1554, 1752, 2001, 2050
TaqI	TCGA	4 cut(s)	56, 979, 1557, 2219
TatI	WGTACW	2 cut(s)	506, 1500
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	7 cut(s)	53, 348, 782, 1175, 1261, 1581, 2029
Tru1I	TTAA	6 cut(s)	1043, 1257, 1541, 1565, 2469, 2499
Tru9I	TTAA	6 cut(s)	1043, 1257, 1541, 1565, 2469, 2499
TscAI	CASTG	4 cut(s)	496, 509, 2268, 2448
TseFI	GTSAC	5 cut(s)	145, 320, 659, 1220, 2266
TseI	GCWGC	5 cut(s)	122, 161, 790, 989, 1649
Tsp45I	GTSAC	5 cut(s)	145, 320, 659, 1220, 2266
TspGWI	ACGGA	2 cut(s)	192, 1667
TspRI	CASTG	4 cut(s)	496, 509, 2268, 2448
Tth111I	GACNNNGTC	1 cut(s)	491
VneI	GTGCAC	2 cut(s)	879, 2439
VpaK11BI	GGWCC	1 cut(s)	1412
XagI	CCTNNNNNAGG	1 cut(s)	1422
XapI	RAATTY	4 cut(s)	1343, 1532, 1568, 2512
XceI	RCATGY	3 cut(s)	1039, 2082, 2404
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1430, 2155
XmiI	GTMKAC	2 cut(s)	860, 1090
XmnI	GAANNNNTTC	3 cut(s)	34, 582, 999
Zsp2I	ATGCAT	3 cut(s)	1037, 2304, 2455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.