Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

659703 .. 662184

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGTGCGTTTAACAGTGGAACAGTTGGCATTGTAAACAAGTCGTTCATATCTTCGATGAGAAAGGGAGAGACGAAAGAAGAACCCTACATTTGTAAGATTGTGGAAATGTTTGAAGCAATTGGTGGGCTATTATATTTTACTGCACAACGGTACTATAGGTCACGAGACACTCACTGTGCTAGTGTTGCTTGTGGACGTGTATTTGTTTCAGACGTCCGAGACGACAACCCTCTGGATTGTCTTGTTGAAAAACTTCATATTGTTAGGCTGACACTAAATGTTGATCCAGATGCGAAGAGTAAATCAATTCCAGTGTGCGATTACTATTGCGACACCAAAAAATATAGTCTGGAAGCGATGACTCAACTATCGCTGTTGAGGATGATGTTTTGTTTGGATAGTGAGGTTGATTCAAAGCTGCCAAATGGAGTGTGTACGAAATCAGAAGTAAGGCTCCTGGACCTATATTTGGGCGTTGTGGAGCGATGTCTACTGGCCTGTGGCTTGGTGCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

174

Amino Acids

19.53

Weight (kDa)

7.46

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
Acc16I	TGCGCA	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	493
AclWI	GGATC	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	155, 439
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	116, 251, 417
AjiI	CACGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw26I	GTCTC	3 cut(s)	65, 162, 216
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	65, 162, 216
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	314, 501
BseBI	CCWGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseNI	ACTGG	2 cut(s)	314, 501
BseXI	GCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	3 cut(s)	65, 162, 216
BsmBI	CGTCTC	2 cut(s)	65, 216
BsnI	GGCC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	500
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	314, 501
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	4 cut(s)	17, 25, 153, 179
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	3 cut(s)	65, 162, 216
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 513
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	500
BtgZI	GCGATG	2 cut(s)	374, 502
BtrI	CACGTC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	22, 175, 321
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	154, 438
CviJI	RGCY	6 cut(s)	130, 271, 421, 457, 500, 507
CviKI_1	RGCY	6 cut(s)	130, 271, 421, 457, 500, 507
CviQI	GTAC	2 cut(s)	154, 438
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	459
Esp3I	CGTCTC	2 cut(s)	65, 216
FaiI	YATR	6 cut(s)	50, 136, 159, 261, 348, 469
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	422
FspAI	RTGCGCAY	1 cut(s)	515
FspBI	CTAG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	364, 413
Hpy166II	GTNNAC	4 cut(s)	37, 197, 438, 494
Hpy188I	TCNGA	3 cut(s)	214, 221, 448
Hpy188III	TCNNGA	4 cut(s)	165, 236, 290, 353
Hpy8I	GTNNAC	4 cut(s)	37, 197, 438, 494
HpyCH4III	ACNGT	4 cut(s)	17, 25, 153, 179
HpyCH4IV	ACGT	2 cut(s)	199, 216
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 513
HpySE526I	ACGT	2 cut(s)	199, 216
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	462, 484
LpnPI	CCDG	8 cut(s)	221, 303, 327, 338, 446, 473, 482, 514
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	199, 216
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	45, 92, 310
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	2 cut(s)	120, 309
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	243, 375, 400
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	188, 513
NdeII	GATC	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	1 cut(s)	463
RsaI	GTAC	2 cut(s)	155, 439
RsaNI	GTAC	2 cut(s)	154, 438
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	461
SetI	ASST	6 cut(s)	164, 202, 219, 411, 423, 468
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	120, 309
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	17, 25, 153, 179
TaiI	ACGT	2 cut(s)	202, 219
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	120, 309
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	22, 182, 321
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	37, 248
TspRI	CASTG	3 cut(s)	22, 182, 321
VpaK11BI	GGWCC	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	183
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.