DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69770 |
| fragaria_vesca | FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560 |
| malus_domestica | MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1 |
| prunus_persica | Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1 |
| pyrus_communis | pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900 |
| rosa_chinensis | RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071 |
| rosa_laevigata | RLG00000005861 RLG00000009362 RLG00000015713 |
| rosa_multiflora | Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620 |
| rosa_rugosa | Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400 |
| rosa_samantha | Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500 |
| rosa_wichuraiana | Rw2G001030 Rw4G007200 Rw4G035230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1516 |
| Acc36I | ACCTGC | 1 cut(s) | 199 |
| Acc65I | GGTACC | 1 cut(s) | 2083 |
| AccB1I | GGYRCC | 1 cut(s) | 2083 |
| AccBSI | CCGCTC | 1 cut(s) | 1240 |
| AccI | GTMKAC | 4 cut(s) | 794, 1675, 2049, 2251 |
| AccII | CGCG | 1 cut(s) | 427 |
| AccIII | TCCGGA | 2 cut(s) | 2263, 2431 |
| AciI | CCGC | 7 cut(s) | 13, 66, 149, 684, 1240, 1754, 2369 |
| AclWI | GGATC | 6 cut(s) | 455, 1124, 1162, 1364, 2033, 2046 |
| AcoI | YGGCCR | 2 cut(s) | 3, 663 |
| AcsI | RAATTY | 6 cut(s) | 244, 368, 471, 1475, 1685, 2417 |
| AcuI | CTGAAG | 2 cut(s) | 905, 1065 |
| AcvI | CACGTG | 1 cut(s) | 1955 |
| AcyI | GRCGYC | 1 cut(s) | 1513 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 12, 1177, 1292, 1331, 2340 |
| AflII | CTTAAG | 1 cut(s) | 1430 |
| AflIII | ACRYGT | 1 cut(s) | 1954 |
| AgsI | TTSAA | 8 cut(s) | 155, 491, 630, 1018, 1402, 2121, 2309, 2340 |
| AjiI | CACGTC | 1 cut(s) | 2249 |
| AjnI | CCWGG | 6 cut(s) | 95, 1202, 1291, 1749, 1797, 1895 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1821, 1853 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 119, 151, 1503, 1535 |
| Alw26I | GTCTC | 2 cut(s) | 1898, 2147 |
| AlwI | GGATC | 6 cut(s) | 455, 1124, 1162, 1364, 2033, 2046 |
| Aor13HI | TCCGGA | 2 cut(s) | 2263, 2431 |
| AoxI | GGCC | 9 cut(s) | 3, 33, 121, 142, 179, 663, 799, 1613, 2178 |
| ApeKI | GCWGC | 4 cut(s) | 82, 1556, 1873, 1876 |
| ApoI | RAATTY | 6 cut(s) | 244, 368, 471, 1475, 1685, 2417 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 513, 933, 1406 |
| Asp718I | GGTACC | 1 cut(s) | 2083 |
| AspLEI | GCGC | 2 cut(s) | 427, 788 |
| AspS9I | GGNCC | 6 cut(s) | 122, 143, 180, 1319, 2178, 2285 |
| AsuC2I | CCSGG | 2 cut(s) | 125, 1612 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 1139, 1307 |
| AsuII | TTCGAA | 1 cut(s) | 56 |
| AvaII | GGWCC | 2 cut(s) | 1319, 2285 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1235, 1268 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 2038 |
| BanI | GGYRCC | 1 cut(s) | 2083 |
| BanII | GRGCYC | 2 cut(s) | 132, 1612 |
| BauI | CACGAG | 1 cut(s) | 1469 |
| BbrPI | CACGTG | 1 cut(s) | 1955 |
| BbsI | GAAGAC | 2 cut(s) | 23, 39 |
| BbvI | GCAGC | 4 cut(s) | 94, 1568, 1860, 1888 |
| BccI | CCATC | 8 cut(s) | 107, 171, 281, 380, 557, 903, 1478, 1537 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 6 cut(s) | 97, 1204, 1293, 1751, 1799, 1897 |
| BciVI | GTATCC | 1 cut(s) | 1033 |
| BclI | TGATCA | 1 cut(s) | 1915 |
| BcnI | CCSGG | 2 cut(s) | 125, 1612 |
| BcoDI | GTCTC | 2 cut(s) | 1898, 2147 |
| BfaI | CTAG | 7 cut(s) | 258, 365, 741, 764, 1112, 1733, 1964 |
| BfmI | CTRYAG | 2 cut(s) | 1874, 2252 |
| BfrI | CTTAAG | 1 cut(s) | 1430 |
| BfuAI | ACCTGC | 1 cut(s) | 199 |
| BfuI | GTATCC | 1 cut(s) | 1033 |
| BglII | AGATCT | 1 cut(s) | 1996 |
| BisI | GCNGC | 4 cut(s) | 83, 1557, 1874, 1877 |
| BlsI | GCNGC | 4 cut(s) | 84, 1558, 1875, 1878 |
| BmcAI | AGTACT | 1 cut(s) | 1110 |
| Bme1390I | CCNGG | 8 cut(s) | 97, 125, 1204, 1293, 1612, 1751, 1799, 1897 |
| Bme18I | GGWCC | 2 cut(s) | 1319, 2285 |
| BmgBI | CACGTC | 1 cut(s) | 2249 |
| BmgT120I | GGNCC | 6 cut(s) | 122, 143, 180, 1319, 2178, 2285 |
| BmiI | GGNNCC | 7 cut(s) | 129, 1209, 1490, 1609, 1821, 2040, 2085 |
| BmrFI | CCNGG | 8 cut(s) | 97, 125, 1204, 1293, 1612, 1751, 1799, 1897 |
| BmrI | ACTGGG | 1 cut(s) | 2012 |
| BmsI | GCATC | 6 cut(s) | 50, 195, 978, 1557, 1747, 2215 |
| BmuI | ACTGGG | 1 cut(s) | 2012 |
| BpiI | GAAGAC | 2 cut(s) | 23, 39 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1615, 1647 |
| BpmI | CTGGAG | 1 cut(s) | 712 |
| Bpu14I | TTCGAA | 1 cut(s) | 56 |
| BpuMI | CCSGG | 2 cut(s) | 125, 1612 |
| BsaAI | YACGTR | 2 cut(s) | 322, 1955 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1547 |
| BsaHI | GRCGYC | 1 cut(s) | 1513 |
| BsaJI | CCNNGG | 6 cut(s) | 36, 808, 1203, 1330, 1492, 1895 |
| BsaWI | WCCGGW | 4 cut(s) | 1170, 2263, 2287, 2431 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 12, 1177, 1292, 1331, 2340 |
| Bse1I | ACTGG | 3 cut(s) | 729, 802, 2007 |
| Bse3DI | GCAATG | 3 cut(s) | 795, 941, 2323 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1547 |
| BseAI | TCCGGA | 2 cut(s) | 2263, 2431 |
| BseBI | CCWGG | 6 cut(s) | 97, 1204, 1293, 1751, 1799, 1897 |
| BseDI | CCNNGG | 6 cut(s) | 36, 808, 1203, 1330, 1492, 1895 |
| BseGI | GGATG | 8 cut(s) | 292, 895, 1309, 1548, 1762, 1807, 2155, 2206 |
| BseJI | GATNNNNATC | 1 cut(s) | 1547 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 12, 1177, 1292, 1331, 2340 |
| BseMI | GCAATG | 3 cut(s) | 795, 941, 2323 |
| BseMII | CTCAG | 5 cut(s) | 1214, 1274, 1611, 1870, 2403 |
| BseNI | ACTGG | 3 cut(s) | 729, 802, 2007 |
| BseXI | GCAGC | 4 cut(s) | 94, 1568, 1860, 1888 |
| BseYI | CCCAGC | 1 cut(s) | 1559 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 427 |
| BshFI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1615, 2180 |
| BshNI | GGYRCC | 1 cut(s) | 2083 |
| BsiSI | CCGG | 7 cut(s) | 125, 666, 1171, 1612, 2264, 2288, 2432 |
| BslFI | GGGAC | 2 cut(s) | 1524, 2128 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 12, 1177, 1292, 1331, 2340 |
| BsmAI | GTCTC | 2 cut(s) | 1898, 2147 |
| BsmBI | CGTCTC | 1 cut(s) | 1898 |
| BsmFI | GGGAC | 2 cut(s) | 1524, 2128 |
| BsmI | GAATGC | 2 cut(s) | 515, 2248 |
| BsnI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1615, 2180 |
| Bsp119I | TTCGAA | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 2 cut(s) | 132, 1612 |
| Bsp13I | TCCGGA | 2 cut(s) | 2263, 2431 |
| BspACI | CCGC | 7 cut(s) | 13, 66, 149, 684, 1240, 1754, 2369 |
| BspANI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1615, 2180 |
| BspCNI | CTCAG | 5 cut(s) | 1215, 1273, 1612, 1869, 2404 |
| BspEI | TCCGGA | 2 cut(s) | 2263, 2431 |
| BspFNI | CGCG | 1 cut(s) | 427 |
| BspLI | GGNNCC | 7 cut(s) | 129, 1209, 1490, 1609, 1821, 2040, 2085 |
| BspMAI | CTGCAG | 1 cut(s) | 1878 |
| BspMI | ACCTGC | 1 cut(s) | 199 |
| BspPI | GGATC | 6 cut(s) | 455, 1124, 1162, 1364, 2033, 2046 |
| BspQI | GCTCTTC | 1 cut(s) | 1751 |
| BspT104I | TTCGAA | 1 cut(s) | 56 |
| BspT107I | GGYRCC | 1 cut(s) | 2083 |
| BspTI | CTTAAG | 1 cut(s) | 1430 |
| BsrBI | CCGCTC | 1 cut(s) | 1240 |
| BsrDI | GCAATG | 3 cut(s) | 795, 941, 2323 |
| BsrI | ACTGG | 3 cut(s) | 729, 802, 2007 |
| BssECI | CCNNGG | 6 cut(s) | 36, 808, 1203, 1330, 1492, 1895 |
| BssNAI | GTATAC | 1 cut(s) | 1676 |
| BssNI | GRCGYC | 1 cut(s) | 1513 |
| BssSI | CACGAG | 1 cut(s) | 1469 |
| BssT1I | CCWWGG | 3 cut(s) | 808, 1330, 1492 |
| Bst1107I | GTATAC | 1 cut(s) | 1676 |
| Bst2BI | CACGAG | 1 cut(s) | 1469 |
| Bst2UI | CCWGG | 6 cut(s) | 97, 1204, 1293, 1751, 1799, 1897 |
| Bst4CI | ACNGT | 6 cut(s) | 436, 1163, 1581, 1702, 2158, 2167 |
| Bst6I | CTCTTC | 2 cut(s) | 685, 1751 |
| BstACI | GRCGYC | 1 cut(s) | 1513 |
| BstAFI | CTTAAG | 1 cut(s) | 1430 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 821 |
| BstBAI | YACGTR | 2 cut(s) | 322, 1955 |
| BstBI | TTCGAA | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 7 cut(s) | 68, 169, 173, 648, 663, 826, 870 |
| BstDEI | CTNAG | 7 cut(s) | 1223, 1260, 1620, 1856, 1971, 2279, 2412 |
| BstF5I | GGATG | 8 cut(s) | 292, 895, 1309, 1548, 1762, 1807, 2155, 2206 |
| BstFNI | CGCG | 1 cut(s) | 427 |
| BstHHI | GCGC | 2 cut(s) | 427, 788 |
| BstMAI | GTCTC | 2 cut(s) | 1898, 2147 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 821, 1562 |
| BstNI | CCWGG | 6 cut(s) | 97, 1204, 1293, 1751, 1799, 1897 |
| BstNSI | RCATGY | 2 cut(s) | 819, 872 |
| BstSCI | CCNGG | 8 cut(s) | 95, 123, 1202, 1291, 1610, 1749, 1797, 1895 |
| BstSFI | CTRYAG | 2 cut(s) | 1874, 2252 |
| BstUI | CGCG | 1 cut(s) | 427 |
| BstV1I | GCAGC | 4 cut(s) | 94, 1568, 1860, 1888 |
| BstV2I | GAAGAC | 2 cut(s) | 23, 39 |
| BstX2I | RGATCY | 5 cut(s) | 460, 1167, 1369, 1996, 2038 |
| BstYI | RGATCY | 5 cut(s) | 460, 1167, 1369, 1996, 2038 |
| BstZ17I | GTATAC | 1 cut(s) | 1676 |
| BsuI | GTATCC | 1 cut(s) | 1033 |
| BsuRI | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1615, 2180 |
| BtgZI | GCGATG | 1 cut(s) | 190 |
| BtrI | CACGTC | 1 cut(s) | 2249 |
| BtsCI | GGATG | 8 cut(s) | 292, 895, 1309, 1548, 1762, 1807, 2155, 2206 |
| BtsI | GCAGTG | 1 cut(s) | 375 |
| BtsIMutI | CAGTG | 3 cut(s) | 375, 1068, 1894 |
| BveI | ACCTGC | 1 cut(s) | 199 |
| Cac8I | GCNNGC | 7 cut(s) | 68, 169, 173, 648, 663, 826, 870 |
| CfoI | GCGC | 2 cut(s) | 427, 788 |
| Cfr13I | GGNCC | 6 cut(s) | 122, 143, 180, 1319, 2178, 2285 |
| CseI | GACGC | 3 cut(s) | 173, 323, 1915 |
| CsiI | ACCWGGT | 1 cut(s) | 1291 |
| CviAII | CATG | 8 cut(s) | 816, 869, 1010, 1326, 1411, 1525, 1552, 2012 |
| DdeI | CTNAG | 7 cut(s) | 1223, 1260, 1620, 1856, 1971, 2279, 2412 |
| DraI | TTTAAA | 1 cut(s) | 1030 |
| EaeI | YGGCCR | 2 cut(s) | 3, 663 |
| Eam1104I | CTCTTC | 2 cut(s) | 685, 1751 |
| EarI | CTCTTC | 2 cut(s) | 685, 1751 |
| EciI | GGCGGA | 1 cut(s) | 1769 |
| Eco130I | CCWWGG | 3 cut(s) | 808, 1330, 1492 |
| Eco24I | GRGCYC | 2 cut(s) | 132, 1612 |
| Eco47I | GGWCC | 2 cut(s) | 1319, 2285 |
| Eco57I | CTGAAG | 2 cut(s) | 905, 1065 |
| Eco72I | CACGTG | 1 cut(s) | 1955 |
| EcoRII | CCWGG | 6 cut(s) | 95, 1202, 1291, 1749, 1797, 1895 |
| EcoT14I | CCWWGG | 3 cut(s) | 808, 1330, 1492 |
| EcoT22I | ATGCAT | 1 cut(s) | 1507 |
| EcoT38I | GRGCYC | 2 cut(s) | 132, 1612 |
| ErhI | CCWWGG | 3 cut(s) | 808, 1330, 1492 |
| Esp3I | CGTCTC | 1 cut(s) | 1898 |
| FaeI | CATG | 8 cut(s) | 819, 872, 1013, 1329, 1414, 1528, 1555, 2015 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 921, 953 |
| FaqI | GGGAC | 2 cut(s) | 1524, 2128 |
| FatI | CATG | 8 cut(s) | 815, 868, 1009, 1325, 1410, 1524, 1551, 2011 |
| FauI | CCCGC | 2 cut(s) | 59, 1233 |
| FauNDI | CATATG | 1 cut(s) | 1567 |
| FbaI | TGATCA | 1 cut(s) | 1915 |
| FblI | GTMKAC | 4 cut(s) | 794, 1675, 2049, 2251 |
| Fnu4HI | GCNGC | 4 cut(s) | 83, 1557, 1874, 1877 |
| FokI | GGATG | 8 cut(s) | 299, 882, 1316, 1555, 1769, 1814, 2162, 2193 |
| FriOI | GRGCYC | 2 cut(s) | 132, 1612 |
| Fsp4HI | GCNGC | 4 cut(s) | 83, 1557, 1874, 1877 |
| FspBI | CTAG | 7 cut(s) | 258, 365, 741, 764, 1112, 1733, 1964 |
| GlaI | GCGC | 2 cut(s) | 426, 787 |
| GluI | GCNGC | 4 cut(s) | 83, 1557, 1874, 1877 |
| GsaI | CCCAGC | 1 cut(s) | 1563 |
| GsuI | CTGGAG | 1 cut(s) | 712 |
| HaeIII | GGCC | 9 cut(s) | 5, 35, 123, 144, 181, 665, 801, 1615, 2180 |
| HapII | CCGG | 7 cut(s) | 125, 666, 1171, 1612, 2264, 2288, 2432 |
| HgaI | GACGC | 3 cut(s) | 173, 323, 1915 |
| HhaI | GCGC | 2 cut(s) | 427, 788 |
| Hin1I | GRCGYC | 1 cut(s) | 1513 |
| Hin1II | CATG | 8 cut(s) | 819, 872, 1013, 1329, 1414, 1528, 1555, 2015 |
| Hin6I | GCGC | 2 cut(s) | 425, 786 |
| HinP1I | GCGC | 2 cut(s) | 425, 786 |
| HincII | GTYRAC | 3 cut(s) | 93, 795, 1465 |
| HindII | GTYRAC | 3 cut(s) | 93, 795, 1465 |
| HindIII | AAGCTT | 3 cut(s) | 524, 1080, 2276 |
| HpaI | GTTAAC | 1 cut(s) | 93 |
| HpaII | CCGG | 7 cut(s) | 125, 666, 1171, 1612, 2264, 2288, 2432 |
| HphI | GGTGA | 3 cut(s) | 128, 1139, 1307 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 167 |
| HpyAV | CCTTC | 3 cut(s) | 55, 524, 1171 |
| HpyCH4III | ACNGT | 6 cut(s) | 436, 1163, 1581, 1702, 2158, 2167 |
| HpyCH4IV | ACGT | 5 cut(s) | 321, 1443, 1513, 1954, 2248 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 821, 1562 |
| HpyF3I | CTNAG | 7 cut(s) | 1223, 1260, 1620, 1856, 1971, 2279, 2412 |
| HpySE526I | ACGT | 5 cut(s) | 321, 1443, 1513, 1954, 2248 |
| Hsp92I | GRCGYC | 1 cut(s) | 1513 |
| Hsp92II | CATG | 8 cut(s) | 819, 872, 1013, 1329, 1414, 1528, 1555, 2015 |
| HspAI | GCGC | 2 cut(s) | 425, 786 |
| Kpn2I | TCCGGA | 2 cut(s) | 2263, 2431 |
| KpnI | GGTACC | 1 cut(s) | 2087 |
| Ksp22I | TGATCA | 1 cut(s) | 1915 |
| KspAI | GTTAAC | 1 cut(s) | 93 |
| LguI | GCTCTTC | 1 cut(s) | 1751 |
| LmnI | GCTCC | 5 cut(s) | 127, 731, 1207, 1607, 2434 |
| Lsp1109I | GCAGC | 4 cut(s) | 94, 1568, 1860, 1888 |
| LweI | GCATC | 6 cut(s) | 50, 195, 978, 1557, 1747, 2215 |
| MabI | ACCWGGT | 1 cut(s) | 1291 |
| MaeI | CTAG | 7 cut(s) | 258, 365, 741, 764, 1112, 1733, 1964 |
| MaeII | ACGT | 5 cut(s) | 321, 1443, 1513, 1954, 2248 |
| MaeIII | GTNAC | 6 cut(s) | 116, 263, 590, 618, 838, 2170 |
| MbiI | CCGCTC | 1 cut(s) | 1240 |
| MfeI | CAATTG | 2 cut(s) | 381, 1397 |
| MflI | RGATCY | 5 cut(s) | 460, 1167, 1369, 1996, 2038 |
| MhlI | GDGCHC | 2 cut(s) | 132, 1612 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 746, 1234, 1848 |
| MmeI | TCCRAC | 3 cut(s) | 88, 967, 1670 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 1507 |
| MroI | TCCGGA | 2 cut(s) | 2263, 2431 |
| MroXI | GAANNNNTTC | 3 cut(s) | 513, 933, 1406 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 2 cut(s) | 873, 2016 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 1559 |
| MspCI | CTTAAG | 1 cut(s) | 1430 |
| MspI | CCGG | 7 cut(s) | 125, 666, 1171, 1612, 2264, 2288, 2432 |
| MspR9I | CCNGG | 8 cut(s) | 97, 125, 1204, 1293, 1612, 1751, 1799, 1897 |
| MunI | CAATTG | 2 cut(s) | 381, 1397 |
| Mva1269I | GAATGC | 2 cut(s) | 515, 2248 |
| MvaI | CCWGG | 6 cut(s) | 97, 1204, 1293, 1751, 1799, 1897 |
| MvnI | CGCG | 1 cut(s) | 427 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 821, 1562 |
| NciI | CCSGG | 2 cut(s) | 125, 1612 |
| NdeI | CATATG | 1 cut(s) | 1567 |
| NlaIII | CATG | 8 cut(s) | 819, 872, 1013, 1329, 1414, 1528, 1555, 2015 |
| NlaIV | GGNNCC | 7 cut(s) | 129, 1209, 1490, 1609, 1821, 2040, 2085 |
| NmeAIII | GCCGAG | 2 cut(s) | 17, 2206 |
| NmuCI | GTSAC | 3 cut(s) | 116, 263, 590 |
| NsiI | ATGCAT | 1 cut(s) | 1507 |
| NspI | RCATGY | 2 cut(s) | 819, 872 |
| NspV | TTCGAA | 1 cut(s) | 56 |
| PaeI | GCATGC | 1 cut(s) | 872 |
| PciSI | GCTCTTC | 1 cut(s) | 1751 |
| PctI | GAATGC | 2 cut(s) | 515, 2248 |
| PdmI | GAANNNNTTC | 3 cut(s) | 513, 933, 1406 |
| PfeI | GAWTC | 8 cut(s) | 53, 487, 580, 920, 998, 2066, 2200, 2440 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PkrI | GCNGC | 4 cut(s) | 84, 1558, 1875, 1878 |
| PleI | GAGTC | 3 cut(s) | 745, 1233, 1848 |
| PmaCI | CACGTG | 1 cut(s) | 1955 |
| PmlI | CACGTG | 1 cut(s) | 1955 |
| PpsI | GAGTC | 3 cut(s) | 745, 1233, 1848 |
| Ppu21I | YACGTR | 2 cut(s) | 322, 1955 |
| Psp6I | CCWGG | 6 cut(s) | 95, 1202, 1291, 1749, 1797, 1895 |
| PspCI | CACGTG | 1 cut(s) | 1955 |
| PspFI | CCCAGC | 1 cut(s) | 1559 |
| PspGI | CCWGG | 6 cut(s) | 95, 1202, 1291, 1749, 1797, 1895 |
| PspN4I | GGNNCC | 7 cut(s) | 129, 1209, 1490, 1609, 1821, 2040, 2085 |
| PspPI | GGNCC | 6 cut(s) | 122, 143, 180, 1319, 2178, 2285 |
| PstI | CTGCAG | 1 cut(s) | 1878 |
| PsuI | RGATCY | 5 cut(s) | 460, 1167, 1369, 1996, 2038 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| PvuII | CAGCTG | 1 cut(s) | 1559 |
| RseI | CAYNNNNRTG | 2 cut(s) | 873, 2016 |
| SalI | GTCGAC | 1 cut(s) | 793 |
| SapI | GCTCTTC | 1 cut(s) | 1751 |
| SatI | GCNGC | 4 cut(s) | 83, 1557, 1874, 1877 |
| Sau96I | GGNCC | 6 cut(s) | 122, 143, 180, 1319, 2178, 2285 |
| ScaI | AGTACT | 1 cut(s) | 1110 |
| SchI | GAGTC | 3 cut(s) | 746, 1234, 1848 |
| ScrFI | CCNGG | 8 cut(s) | 97, 125, 1204, 1293, 1612, 1751, 1799, 1897 |
| SduI | GDGCHC | 2 cut(s) | 132, 1612 |
| SexAI | ACCWGGT | 1 cut(s) | 1291 |
| SfaNI | GCATC | 6 cut(s) | 50, 195, 978, 1557, 1747, 2215 |
| SfcI | CTRYAG | 2 cut(s) | 1874, 2252 |
| SfuI | TTCGAA | 1 cut(s) | 56 |
| SinI | GGWCC | 2 cut(s) | 1319, 2285 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 873, 2016 |
| SmlI | CTYRAG | 1 cut(s) | 1430 |
| SmoI | CTYRAG | 1 cut(s) | 1430 |
| SphI | GCATGC | 1 cut(s) | 872 |
| SsiI | CCGC | 7 cut(s) | 13, 66, 149, 684, 1240, 1754, 2369 |
| SspI | AATATT | 2 cut(s) | 532, 614 |
| SspMI | CTAG | 7 cut(s) | 258, 365, 741, 764, 1112, 1733, 1964 |
| StyD4I | CCNGG | 8 cut(s) | 95, 123, 1202, 1291, 1610, 1749, 1797, 1895 |
| StyI | CCWWGG | 3 cut(s) | 808, 1330, 1492 |
| TaaI | ACNGT | 6 cut(s) | 436, 1163, 1581, 1702, 2158, 2167 |
| TaiI | ACGT | 5 cut(s) | 324, 1446, 1516, 1957, 2251 |
| TaqI | TCGA | 3 cut(s) | 56, 555, 794 |
| TatI | WGTACW | 3 cut(s) | 227, 1108, 1158 |
| TfiI | GAWTC | 8 cut(s) | 53, 487, 580, 920, 998, 2066, 2200, 2440 |
| TscAI | CASTG | 3 cut(s) | 382, 1075, 1894 |
| TseFI | GTSAC | 3 cut(s) | 116, 263, 590 |
| TseI | GCWGC | 4 cut(s) | 82, 1556, 1873, 1876 |
| Tsp45I | GTSAC | 3 cut(s) | 116, 263, 590 |
| TspGWI | ACGGA | 1 cut(s) | 1914 |
| TspRI | CASTG | 3 cut(s) | 382, 1075, 1894 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| Vha464I | CTTAAG | 1 cut(s) | 1430 |
| VpaK11BI | GGWCC | 2 cut(s) | 1319, 2285 |
| XapI | RAATTY | 6 cut(s) | 244, 368, 471, 1475, 1685, 2417 |
| XbaI | TCTAGA | 1 cut(s) | 364 |
| XceI | RCATGY | 2 cut(s) | 819, 872 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 280, 1337 |
| XmiI | GTMKAC | 4 cut(s) | 794, 1675, 2049, 2251 |
| XmnI | GAANNNNTTC | 3 cut(s) | 513, 933, 1406 |
| XspI | CTAG | 7 cut(s) | 258, 365, 741, 764, 1112, 1733, 1964 |
| ZraI | GACGTC | 1 cut(s) | 1514 |
| ZrmI | AGTACT | 1 cut(s) | 1110 |
| Zsp2I | ATGCAT | 1 cut(s) | 1507 |