Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

681622 .. 683036

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTCCCCGCAACCAAACGGCCCCAAAAGTCCTTGCGCTCCAAAACCAAACGTCACCTCAAAATTCAAACCCCACTTTCCAAATTTCCCGTTTTCCCGCCCACACGCCGCGTACTCCCCATAATTTCACGGCCCACTATAAAACACAACCCAATCTAATCACTCACGCACTAAAACAACCCTATTGCCCATCTCTCTCTGTCTCCTGCCCTCTCTTTCTCTCTCTAAGATCCACCGTCTTCTCCGGCGATTCACCCTCTCTCCGCCGTAAGCAGAATTGCGTGCAAGCGGAAGTCGAAGGCCGGAACCTCTTCAGGTTCTCTGCCGAAATCGAAGAGCCCAAGGCAAACCAGGAAGGCCAGAGTTCAGGAGGAGGTAGCCACGAGTGTGGAAAAAGCTACTTCTCCGCCGAAATCGAAGTAGTCCTTCTGCGTTTCAACAGGGAGAGACGAAAGAAGAACCCTACATTTGTAAGATTTAGGAAATGTTTGAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.87

Weight (kDa)

10.16

Isoelectric Point (pI)

74.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AciI	CCGC	6 cut(s)	10, 99, 110, 265, 290, 408
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	64, 84
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	69, 439
AjnI	CCWGG	1 cut(s)	351
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	399
AluI	AGCT	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	208, 442
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	4 cut(s)	21, 132, 301, 358
ApoI	RAATTY	2 cut(s)	64, 84
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	22, 133
AsuHPI	GGTGA	2 cut(s)	48, 246
BanII	GRGCYC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	232
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	3 cut(s)	36, 147, 252
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	208, 442
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	22, 133
BmiI	GGNNCC	2 cut(s)	24, 308
BmrFI	CCNGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	23, 134, 303, 360
BsiSI	CCGG	2 cut(s)	246, 304
BsmAI	GTCTC	2 cut(s)	208, 442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	23, 134, 303, 360
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	6 cut(s)	10, 99, 110, 265, 290, 408
BspANI	GGCC	4 cut(s)	23, 134, 303, 360
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	24, 308
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	317, 330
BstC8I	GCNNGC	2 cut(s)	284, 288
BstDEI	CTNAG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	2 cut(s)	208, 442
BstMBI	GATC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	23, 134, 303, 360
Cac8I	GCNNGC	2 cut(s)	284, 288
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	22, 133
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	7 cut(s)	23, 134, 303, 340, 360, 381, 399
CviKI_1	RGCY	7 cut(s)	23, 134, 303, 340, 360, 381, 399
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	317, 330
EarI	CTCTTC	2 cut(s)	317, 330
EciI	GGCGGA	2 cut(s)	254, 397
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	442
FaiI	YATR	3 cut(s)	123, 141, 499
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FauI	CCCGC	2 cut(s)	17, 106
Fnu4HI	GCNGC	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	110
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	23, 134, 303, 360
HapII	CCGG	2 cut(s)	246, 304
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	246, 304
HphI	GGTGA	2 cut(s)	48, 246
Hpy188III	TCNNGA	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	293, 350, 437
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	53
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	230
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	9 cut(s)	220, 259, 301, 317, 338, 354, 365, 374, 427
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	4 cut(s)	232, 304, 347, 469
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	64, 84, 124, 277
MnlI	CCTC	7 cut(s)	69, 222, 268, 320, 365, 368, 486
MroXI	GAANNNNTTC	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	2 cut(s)	246, 304
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	112
NdeII	GATC	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	24, 308
NmuCI	GTSAC	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	24, 308
PspPI	GGNCC	2 cut(s)	22, 133
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	330
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	22, 133
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	7 cut(s)	56, 61, 312, 320, 379, 401, 497
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	4 cut(s)	64, 84, 124, 277
SsiI	CCGC	6 cut(s)	10, 99, 110, 265, 290, 408
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	297, 333, 417
TasI	AATT	4 cut(s)	64, 84, 124, 277
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	54
XapI	RAATTY	2 cut(s)	64, 84
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.