Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

14413265 .. 14421163

Gene Structure 7899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGCCACCAAGCGGAAGACGAGGTCGCTTTCGGCCTCGGCGTCGTCTTCAGATTCGAAGAAGGGCGAGCAGAAGTTAACCAGGAGAGCTGTTGGAGATGGTGACGGCCCGGAGCCCAAGTTCATCGGCCCACCGCTTCAAGACGACGACGCTCGCAAGCGATGGCCCAAGAGCTACGCCGACAAGAAGATGCGGGTATCTGGGCTAAATGGTACAAACAAAGATGAAAATTCTGTCCAAGCTAGGTGTCACTATGCCAAAGCAGAGGTGGATGGGATTGTTTACGATCTATATGATGACGCTCACGTAAAAGCAAGTGAGGGAGAAGAACCCTACATTTGTAAGGTTCTAGAATTTTTCACTGCAATTGATGGATCAATGTATTTTACTGCACAATGGTACTACCGAGCGCGAGATACTGTCATAAAAGATTGTGCTGTCATAGATCCTAAAAGAATTTTTTTTTCGGAGATTCAAGACACAAACCCTTTGGAATGCCTTCTGGGGAAGCTTAATATTGTCAGATTGCCTTTAGATGTCGATTTTGATGGAAAAAGTAAATTGATTCCAGAGTGTGACTACTATTGCGATACAAAATATTTGTTACCTTATTCAAGTTTTGTCAATTTGCCAGCAGAAATTGTGCTGGCCGGAATTGATACCTCTTCCGCAATTTCTAATGGCGTTAATTCTGAACTTCCACAAGGTTGCTCCAGTAGAGAGTCTAGTAAACCAGAAGTCAGATTGCTAGATTTATATTCTGGCTGTGGCGCAATGTCGACTGGCCTATGCCTTGGTGCATGTTCTGCTGGCGTTAATCTTGTTACTAAATGGGCAGTTGATGTGAACAAGCATGCTTGTGAAAGTCTGAAGTTTAACCATCCTGAAACAATGGTTCGGAATGAATCTGCCGAAGATTTTCTTTCATTGCTAAAACAATGGGAACAACTCTGCATCTGTTTTAATTTTGTCGGAACAAATGAATCAGAGAAGCATGGGTTCAATTTCTTCTTTAAAACAGAAGATACTGAAGATGAAGATGAAATAATTGGCACTGATAATGAAGCTTCGGAAGTCTATGAAGTAGCACAAGTACTAGAAATATGTTATGGTGATCCCAACCATATCAAAGAGAGGGGATTGTACTGTAAGATCCGGTGGAAGGGCTATGGTGCTGATGAGGACACCTGGGAGCCTATTGAGGAACTGAGTCATTGTAAAGAGCGGGTACAAGAGTTTGTTTCTCAGGGTAATTCATCAAACCTATTGCCCTTACCTGGTGATGTGGATGTGATCTGTGGTGGACCACCATGCCAAGGAATAAGTGGATTTAACAGGTTTAGGAACGAAGAAGATCCGTTGGATGATGAAAAAAACAAACAATTGAAAGTTTTCATGGATTTAGTTCAGTACCTTAAGCCCAAGCACGTTTTAATGGAAAATGTGGTTGACCTCGTGAAATTTGCTGATGGGTTCCTTGGTCGTTATGCATTGGGACGTCTTGTTCACATGAACTATCAAGCAAGGATGGGCATCATGGCAGCTGGGGCATATGGACTTCCGCAGTTTCGTTTGCGTATATTTATGTGGGGAGCCCGGCCTACTGAGAGGTTGCCTCAATATCCATATCCGACACACGATGTCGTAGTAAGGGGTTGTATACCTACTGAATTTGAGAGAAATACTGTCGCTTATGATGAGGGTCATAATGTCAAACTAGAGAAAAAGCTCTTCCTGGCGGATGCGATTTCTGATCTCCCCCCTGTTGAGAATAGTGAAAACCAGGATGAAATGCCCTATGGGGAACCTCCCCAAACAGATTTTCAGAAGTGTATCAGACTCAGCAAGAATTATATGATGCAGCTTTCAGTCAGTGAACCCTGGAATGAGACGCTATATGATCATCGTCCGTTAAAGCTGAACGAAGATGATTATGCACGTGTCTGCCTAGTACCTAAGAAAAAGGGTGGGAACTTTAGAGATCTACTAGGTGTTCATGTGCGTGGTGGTGTAGTGGAGTGGGATCCTGATGTAGACAGAGAGTATTTGGATTCGGGGAAACCATTGGTACCTAATTATGCTGTGAGTTTCAGGAATGGGACTTCAAAAAAGCCTTTTGCTCGGTTGTGGTGGGATGAGACTGTACCAACAGTTGTTACACAGGCCGAGCCACATAATCAGGCGATTCTGCATCCTGAACAAGATAGTGTTGTCAATTCTGGTCCAGTAAAGCAGAGGTACATTCAAGTCGGCAATGCTGTTGCAGTTCCTGTTTCAAGGTCATTAGGATACACGTTAGGTCGTGCGGTTAGAGGTATCTCGGACGATGAACCACTATTTACTTTGCCTGAGAAGTTCCCTTACCCTCCGGAGCAGATTCCTCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

796

Amino Acids

89.73

Weight (kDa)

5.14

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	105 - 177	1.6e-08	BAH domain
Chromo	PF00385	360 - 414	1.2e-09	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	424 - 546	3.2e-17	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1501
Acc65I	GGTACC	1 cut(s)	2068
AccB1I	GGYRCC	1 cut(s)	2068
AccBSI	CCGCTC	1 cut(s)	1225
AccI	GTMKAC	3 cut(s)	779, 1660, 2034
AccII	CGCG	1 cut(s)	412
AccIII	TCCGGA	1 cut(s)	2368
AciI	CCGC	8 cut(s)	13, 134, 193, 669, 1225, 1562, 1739, 2306
AclWI	GGATC	7 cut(s)	382, 440, 1109, 1147, 1349, 2018, 2031
AcoI	YGGCCR	2 cut(s)	3, 648
AcsI	RAATTY	5 cut(s)	229, 353, 456, 1460, 1670
AcuI	CTGAAG	3 cut(s)	33, 890, 1050
AcvI	CACGTG	1 cut(s)	1940
AcyI	GRCGYC	2 cut(s)	41, 1498
AfiI	CCNNNNNNNGG	4 cut(s)	12, 1162, 1277, 1316
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	2 cut(s)	1939, 2292
AgsI	TTSAA	8 cut(s)	140, 476, 615, 1003, 1387, 2106, 2246, 2277
AjnI	CCWGG	6 cut(s)	80, 1187, 1276, 1734, 1782, 1880
AjuI	GAANNNNNNNTTGG	2 cut(s)	1806, 1838
AloI	GAACNNNNNNTCC	4 cut(s)	104, 136, 1488, 1520
AluBI	AGCT	9 cut(s)	89, 174, 242, 511, 1067, 1544, 1729, 1864, 1918
AluI	AGCT	9 cut(s)	89, 174, 242, 511, 1067, 1544, 1729, 1864, 1918
Alw26I	GTCTC	2 cut(s)	1883, 2132
AlwI	GGATC	7 cut(s)	382, 440, 1109, 1147, 1349, 2018, 2031
AlwNI	CAGNNNCTG	1 cut(s)	2270
Aor13HI	TCCGGA	1 cut(s)	2368
AoxI	GGCC	9 cut(s)	3, 33, 106, 127, 164, 648, 784, 1598, 2163
ApeKI	GCWGC	2 cut(s)	1541, 1861
ApoI	RAATTY	5 cut(s)	229, 353, 456, 1460, 1670
Asp700I	GAANNNNTTC	3 cut(s)	498, 918, 1391
Asp718I	GGTACC	1 cut(s)	2068
AspLEI	GCGC	2 cut(s)	412, 773
AspS9I	GGNCC	5 cut(s)	107, 128, 165, 1304, 2222
AsuC2I	CCSGG	2 cut(s)	110, 1597
AsuHPI	GGTGA	3 cut(s)	113, 1124, 1292
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	1304, 2222
BaeI	ACNNNNGTAYC	2 cut(s)	1220, 1253
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2023
BanI	GGYRCC	1 cut(s)	2068
BanII	GRGCYC	2 cut(s)	117, 1597
BarI	GAAGNNNNNNTAC	2 cut(s)	2345, 2377
BauI	CACGAG	1 cut(s)	1454
BbrPI	CACGTG	1 cut(s)	1940
BbsI	GAAGAC	2 cut(s)	23, 39
BbvI	GCAGC	2 cut(s)	1553, 1873
BccI	CCATC	8 cut(s)	92, 156, 266, 365, 542, 888, 1463, 1522
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	6 cut(s)	82, 1189, 1278, 1736, 1784, 1882
BciVI	GTATCC	1 cut(s)	2282
BclI	TGATCA	1 cut(s)	1900
BcnI	CCSGG	2 cut(s)	110, 1597
BcoDI	GTCTC	2 cut(s)	1883, 2132
BfaI	CTAG	8 cut(s)	243, 350, 726, 749, 1097, 1718, 1949, 1988
BfrI	CTTAAG	1 cut(s)	1415
BfuI	GTATCC	1 cut(s)	2282
BglII	AGATCT	1 cut(s)	1981
BisI	GCNGC	2 cut(s)	1542, 1862
BlsI	GCNGC	2 cut(s)	1543, 1863
BmcAI	AGTACT	1 cut(s)	1095
Bme1390I	CCNGG	8 cut(s)	82, 110, 1189, 1278, 1597, 1736, 1784, 1882
Bme18I	GGWCC	2 cut(s)	1304, 2222
BmgT120I	GGNCC	5 cut(s)	107, 128, 165, 1304, 2222
BmiI	GGNNCC	7 cut(s)	114, 1194, 1475, 1594, 1806, 2025, 2070
BmrFI	CCNGG	8 cut(s)	82, 110, 1189, 1278, 1597, 1736, 1784, 1882
BmsI	GCATC	6 cut(s)	180, 963, 1542, 1732, 1848, 2200
BpiI	GAAGAC	2 cut(s)	23, 39
BplI	GAGNNNNNCTC	2 cut(s)	1600, 1632
BpmI	CTGGAG	1 cut(s)	697
Bpu14I	TTCGAA	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	110, 1597
BsaAI	YACGTR	2 cut(s)	307, 1940
BsaBI	GATNNNNATC	1 cut(s)	1532
BsaHI	GRCGYC	2 cut(s)	41, 1498
BsaJI	CCNNGG	6 cut(s)	36, 793, 1188, 1315, 1477, 1880
BsaWI	WCCGGW	2 cut(s)	1155, 2368
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 1162, 1277, 1316
Bse1I	ACTGG	3 cut(s)	714, 787, 2225
Bse3DI	GCAATG	3 cut(s)	780, 926, 2260
Bse8I	GATNNNNATC	1 cut(s)	1532
BseAI	TCCGGA	1 cut(s)	2368
BseBI	CCWGG	6 cut(s)	82, 1189, 1278, 1736, 1784, 1882
BseDI	CCNNGG	6 cut(s)	36, 793, 1188, 1315, 1477, 1880
BseGI	GGATG	9 cut(s)	277, 880, 1294, 1369, 1533, 1747, 1792, 2140, 2191
BseJI	GATNNNNATC	1 cut(s)	1532
BseLI	CCNNNNNNNGG	4 cut(s)	12, 1162, 1277, 1316
BseMI	GCAATG	3 cut(s)	780, 926, 2260
BseMII	CTCAG	5 cut(s)	1199, 1259, 1596, 1855, 2340
BseNI	ACTGG	3 cut(s)	714, 787, 2225
BseXI	GCAGC	2 cut(s)	1553, 1873
BseYI	CCCAGC	1 cut(s)	1544
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	9 cut(s)	5, 35, 108, 129, 166, 650, 786, 1600, 2165
BshNI	GGYRCC	1 cut(s)	2068
BsiSI	CCGG	5 cut(s)	110, 651, 1156, 1597, 2369
BslFI	GGGAC	2 cut(s)	1509, 2113
BslI	CCNNNNNNNGG	4 cut(s)	12, 1162, 1277, 1316
BsmAI	GTCTC	2 cut(s)	1883, 2132
BsmBI	CGTCTC	1 cut(s)	1883
BsmFI	GGGAC	2 cut(s)	1509, 2113
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	9 cut(s)	5, 35, 108, 129, 166, 650, 786, 1600, 2165
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	117, 1597
Bsp13I	TCCGGA	1 cut(s)	2368
BspACI	CCGC	8 cut(s)	13, 134, 193, 669, 1225, 1562, 1739, 2306
BspANI	GGCC	9 cut(s)	5, 35, 108, 129, 166, 650, 786, 1600, 2165
BspCNI	CTCAG	5 cut(s)	1200, 1258, 1597, 1854, 2341
BspEI	TCCGGA	1 cut(s)	2368
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	7 cut(s)	114, 1194, 1475, 1594, 1806, 2025, 2070
BspPI	GGATC	7 cut(s)	382, 440, 1109, 1147, 1349, 2018, 2031
BspQI	GCTCTTC	1 cut(s)	1736
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	2068
BspTI	CTTAAG	1 cut(s)	1415
BsrBI	CCGCTC	1 cut(s)	1225
BsrDI	GCAATG	3 cut(s)	780, 926, 2260
BsrI	ACTGG	3 cut(s)	714, 787, 2225
BssECI	CCNNGG	6 cut(s)	36, 793, 1188, 1315, 1477, 1880
BssNAI	GTATAC	1 cut(s)	1661
BssNI	GRCGYC	2 cut(s)	41, 1498
BssSI	CACGAG	1 cut(s)	1454
BssT1I	CCWWGG	3 cut(s)	793, 1315, 1477
Bst1107I	GTATAC	1 cut(s)	1661
Bst2BI	CACGAG	1 cut(s)	1454
Bst2UI	CCWGG	6 cut(s)	82, 1189, 1278, 1736, 1784, 1882
Bst4CI	ACNGT	5 cut(s)	421, 1148, 1687, 2143, 2152
Bst6I	CTCTTC	2 cut(s)	670, 1736
BstACI	GRCGYC	2 cut(s)	41, 1498
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBAI	YACGTR	2 cut(s)	307, 1940
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	7 cut(s)	68, 154, 158, 633, 648, 811, 855
BstDEI	CTNAG	6 cut(s)	1208, 1245, 1605, 1841, 1956, 2349
BstF5I	GGATG	9 cut(s)	277, 880, 1294, 1369, 1533, 1747, 1792, 2140, 2191
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	412, 773
BstMAI	GTCTC	2 cut(s)	1883, 2132
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 1547
BstNI	CCWGG	6 cut(s)	82, 1189, 1278, 1736, 1784, 1882
BstNSI	RCATGY	2 cut(s)	804, 857
BstSCI	CCNGG	8 cut(s)	80, 108, 1187, 1276, 1595, 1734, 1782, 1880
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	1553, 1873
BstV2I	GAAGAC	2 cut(s)	23, 39
BstX2I	RGATCY	5 cut(s)	445, 1152, 1354, 1981, 2023
BstYI	RGATCY	5 cut(s)	445, 1152, 1354, 1981, 2023
BstZ17I	GTATAC	1 cut(s)	1661
BsuI	GTATCC	1 cut(s)	2282
BsuRI	GGCC	9 cut(s)	5, 35, 108, 129, 166, 650, 786, 1600, 2165
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	9 cut(s)	277, 880, 1294, 1369, 1533, 1747, 1792, 2140, 2191
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	360, 1053, 1879
Cac8I	GCNNGC	7 cut(s)	68, 154, 158, 633, 648, 811, 855
CaiI	CAGNNNCTG	1 cut(s)	2270
CfoI	GCGC	2 cut(s)	412, 773
Cfr13I	GGNCC	5 cut(s)	107, 128, 165, 1304, 2222
CseI	GACGC	4 cut(s)	30, 158, 308, 1900
CsiI	ACCWGGT	1 cut(s)	1276
CviAII	CATG	8 cut(s)	801, 854, 995, 1311, 1396, 1510, 1537, 1997
DdeI	CTNAG	6 cut(s)	1208, 1245, 1605, 1841, 1956, 2349
DraI	TTTAAA	1 cut(s)	1015
EaeI	YGGCCR	2 cut(s)	3, 648
Eam1104I	CTCTTC	2 cut(s)	670, 1736
EarI	CTCTTC	2 cut(s)	670, 1736
EciI	GGCGGA	1 cut(s)	1754
Eco130I	CCWWGG	3 cut(s)	793, 1315, 1477
Eco24I	GRGCYC	2 cut(s)	117, 1597
Eco47I	GGWCC	2 cut(s)	1304, 2222
Eco57I	CTGAAG	3 cut(s)	33, 890, 1050
Eco72I	CACGTG	1 cut(s)	1940
EcoRII	CCWGG	6 cut(s)	80, 1187, 1276, 1734, 1782, 1880
EcoT14I	CCWWGG	3 cut(s)	793, 1315, 1477
EcoT22I	ATGCAT	1 cut(s)	1492
EcoT38I	GRGCYC	2 cut(s)	117, 1597
ErhI	CCWWGG	3 cut(s)	793, 1315, 1477
Esp3I	CGTCTC	1 cut(s)	1883
FaeI	CATG	8 cut(s)	804, 857, 998, 1314, 1399, 1513, 1540, 2000
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	2 cut(s)	1509, 2113
FatI	CATG	8 cut(s)	800, 853, 994, 1310, 1395, 1509, 1536, 1996
FauI	CCCGC	2 cut(s)	186, 1218
FauNDI	CATATG	1 cut(s)	1552
FbaI	TGATCA	1 cut(s)	1900
FblI	GTMKAC	3 cut(s)	779, 1660, 2034
Fnu4HI	GCNGC	2 cut(s)	1542, 1862
FokI	GGATG	9 cut(s)	284, 867, 1301, 1376, 1540, 1754, 1799, 2147, 2178
FriOI	GRGCYC	2 cut(s)	117, 1597
Fsp4HI	GCNGC	2 cut(s)	1542, 1862
FspBI	CTAG	8 cut(s)	243, 350, 726, 749, 1097, 1718, 1949, 1988
GlaI	GCGC	2 cut(s)	411, 772
GluI	GCNGC	2 cut(s)	1542, 1862
GsaI	CCCAGC	1 cut(s)	1548
GsuI	CTGGAG	1 cut(s)	697
HaeIII	GGCC	9 cut(s)	5, 35, 108, 129, 166, 650, 786, 1600, 2165
HapII	CCGG	5 cut(s)	110, 651, 1156, 1597, 2369
HgaI	GACGC	4 cut(s)	30, 158, 308, 1900
HhaI	GCGC	2 cut(s)	412, 773
Hin1I	GRCGYC	2 cut(s)	41, 1498
Hin1II	CATG	8 cut(s)	804, 857, 998, 1314, 1399, 1513, 1540, 2000
Hin6I	GCGC	2 cut(s)	410, 771
HinP1I	GCGC	2 cut(s)	410, 771
HincII	GTYRAC	3 cut(s)	78, 780, 1450
HindII	GTYRAC	3 cut(s)	78, 780, 1450
HindIII	AAGCTT	2 cut(s)	509, 1065
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	5 cut(s)	110, 651, 1156, 1597, 2369
HphI	GGTGA	3 cut(s)	113, 1124, 1292
Hpy99I	CGWCG	3 cut(s)	46, 149, 152
HpyAV	CCTTC	3 cut(s)	55, 509, 1156
HpyCH4III	ACNGT	5 cut(s)	421, 1148, 1687, 2143, 2152
HpyCH4IV	ACGT	5 cut(s)	306, 1428, 1498, 1939, 2294
HpyCH4V	TGCA	9 cut(s)	365, 392, 800, 954, 1490, 1861, 1937, 2191, 2264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 1547
HpyF3I	CTNAG	6 cut(s)	1208, 1245, 1605, 1841, 1956, 2349
HpySE526I	ACGT	5 cut(s)	306, 1428, 1498, 1939, 2294
Hsp92I	GRCGYC	2 cut(s)	41, 1498
Hsp92II	CATG	8 cut(s)	804, 857, 998, 1314, 1399, 1513, 1540, 2000
HspAI	GCGC	2 cut(s)	410, 771
Kpn2I	TCCGGA	1 cut(s)	2368
KpnI	GGTACC	1 cut(s)	2072
Ksp22I	TGATCA	1 cut(s)	1900
KspAI	GTTAAC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	1736
LmnI	GCTCC	5 cut(s)	112, 716, 1192, 1592, 2371
Lsp1109I	GCAGC	2 cut(s)	1553, 1873
LweI	GCATC	6 cut(s)	180, 963, 1542, 1732, 1848, 2200
MabI	ACCWGGT	1 cut(s)	1276
MaeI	CTAG	8 cut(s)	243, 350, 726, 749, 1097, 1718, 1949, 1988
MaeII	ACGT	5 cut(s)	306, 1428, 1498, 1939, 2294
MaeIII	GTNAC	6 cut(s)	101, 248, 575, 603, 823, 2155
MbiI	CCGCTC	1 cut(s)	1225
MfeI	CAATTG	2 cut(s)	366, 1382
MflI	RGATCY	5 cut(s)	445, 1152, 1354, 1981, 2023
MhlI	GDGCHC	2 cut(s)	117, 1597
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	731, 1219, 1833
MmeI	TCCRAC	4 cut(s)	73, 952, 1341, 1655
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1492
MroI	TCCGGA	1 cut(s)	2368
MroXI	GAANNNNTTC	3 cut(s)	498, 918, 1391
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	858, 2001
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1544
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	5 cut(s)	110, 651, 1156, 1597, 2369
MspR9I	CCNGG	8 cut(s)	82, 110, 1189, 1278, 1597, 1736, 1784, 1882
MunI	CAATTG	2 cut(s)	366, 1382
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	6 cut(s)	82, 1189, 1278, 1736, 1784, 1882
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	806, 1547
NciI	CCSGG	2 cut(s)	110, 1597
NdeI	CATATG	1 cut(s)	1552
NlaIII	CATG	8 cut(s)	804, 857, 998, 1314, 1399, 1513, 1540, 2000
NlaIV	GGNNCC	7 cut(s)	114, 1194, 1475, 1594, 1806, 2025, 2070
NmeAIII	GCCGAG	2 cut(s)	17, 2191
NmuCI	GTSAC	3 cut(s)	101, 248, 575
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	2 cut(s)	804, 857
NspV	TTCGAA	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	1736
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	3 cut(s)	498, 918, 1391
PfeI	GAWTC	8 cut(s)	53, 472, 565, 905, 983, 2051, 2185, 2377
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	1543, 1863
PleI	GAGTC	3 cut(s)	730, 1218, 1833
PmaCI	CACGTG	1 cut(s)	1940
PmlI	CACGTG	1 cut(s)	1940
PpsI	GAGTC	3 cut(s)	730, 1218, 1833
Ppu21I	YACGTR	2 cut(s)	307, 1940
Psp6I	CCWGG	6 cut(s)	80, 1187, 1276, 1734, 1782, 1880
PspCI	CACGTG	1 cut(s)	1940
PspFI	CCCAGC	1 cut(s)	1544
PspGI	CCWGG	6 cut(s)	80, 1187, 1276, 1734, 1782, 1880
PspN4I	GGNNCC	7 cut(s)	114, 1194, 1475, 1594, 1806, 2025, 2070
PspPI	GGNCC	5 cut(s)	107, 128, 165, 1304, 2222
PstNI	CAGNNNCTG	1 cut(s)	2270
PsuI	RGATCY	5 cut(s)	445, 1152, 1354, 1981, 2023
PsyI	GACNNNGTC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	1544
RseI	CAYNNNNRTG	2 cut(s)	858, 2001
SalI	GTCGAC	1 cut(s)	778
SapI	GCTCTTC	1 cut(s)	1736
SatI	GCNGC	2 cut(s)	1542, 1862
Sau96I	GGNCC	5 cut(s)	107, 128, 165, 1304, 2222
ScaI	AGTACT	1 cut(s)	1095
SchI	GAGTC	3 cut(s)	731, 1219, 1833
ScrFI	CCNGG	8 cut(s)	82, 110, 1189, 1278, 1597, 1736, 1784, 1882
SduI	GDGCHC	2 cut(s)	117, 1597
SexAI	ACCWGGT	1 cut(s)	1276
SfaNI	GCATC	6 cut(s)	180, 963, 1542, 1732, 1848, 2200
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	2 cut(s)	1304, 2222
SmiMI	CAYNNNNRTG	2 cut(s)	858, 2001
SmlI	CTYRAG	1 cut(s)	1415
SmoI	CTYRAG	1 cut(s)	1415
SphI	GCATGC	1 cut(s)	857
SsiI	CCGC	8 cut(s)	13, 134, 193, 669, 1225, 1562, 1739, 2306
SspI	AATATT	2 cut(s)	517, 599
SspMI	CTAG	8 cut(s)	243, 350, 726, 749, 1097, 1718, 1949, 1988
StyD4I	CCNGG	8 cut(s)	80, 108, 1187, 1276, 1595, 1734, 1782, 1880
StyI	CCWWGG	3 cut(s)	793, 1315, 1477
TaaI	ACNGT	5 cut(s)	421, 1148, 1687, 2143, 2152
TaiI	ACGT	5 cut(s)	309, 1431, 1501, 1942, 2297
TaqI	TCGA	3 cut(s)	56, 540, 779
TatI	WGTACW	2 cut(s)	1093, 1143
TfiI	GAWTC	8 cut(s)	53, 472, 565, 905, 983, 2051, 2185, 2377
TscAI	CASTG	3 cut(s)	367, 1060, 1879
TseFI	GTSAC	3 cut(s)	101, 248, 575
TseI	GCWGC	2 cut(s)	1541, 1861
Tsp45I	GTSAC	3 cut(s)	101, 248, 575
TspGWI	ACGGA	2 cut(s)	1347, 1899
TspRI	CASTG	3 cut(s)	367, 1060, 1879
Tth111I	GACNNNGTC	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	1415
VpaK11BI	GGWCC	2 cut(s)	1304, 2222
XapI	RAATTY	5 cut(s)	229, 353, 456, 1460, 1670
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	2 cut(s)	804, 857
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 1322
XmiI	GTMKAC	3 cut(s)	779, 1660, 2034
XmnI	GAANNNNTTC	3 cut(s)	498, 918, 1391
XspI	CTAG	8 cut(s)	243, 350, 726, 749, 1097, 1718, 1949, 1988
ZraI	GACGTC	1 cut(s)	1499
ZrmI	AGTACT	1 cut(s)	1095
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.