Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

51556374 .. 51564842

Gene Structure 8469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGCCCACCAAGCGGAAGACGAGGTCGCTTTCGGCCTCGGCATTGTCTTCAGATTCGAAGAAGGGCGAGCAAACCGATCAGCGGAAGTTAACCAGGAGAGCTGTTGGAGATGGTGACGGCCCGGAGCCCAAGTTCATCGGCCCACCCCTTCAAGACGACGACGCTCGCAAGCGATGGCCCAAGAGCTACGCCGACGAGAAGATGCAGGTGTCTGGGCTAAATGGTACAAACAAAGATGAAAATTCTGTCCAAGCTAGGTGTCACTATGGCAAAGCAGAGGTGGATGGGATTGTTTACGATCTATATGATGACGCTCACGTGAAAGCAAGTGAGGGAGAAGAACCCTACATTTGTAAGGTTCTAGAATTTTTCACTGCAATTGATGGATCAATGTATTTTACTGCACAATGGTACTACCGAGCGCGAGATACTGTCATAAAAGATTGTGCTGTCATAGATCCTAAAAGAATTTTTTTTTCGGAGATTCAAGACACAAACCCTTTGGAATGCCTTCTGGGGAAGCTTAATATTGTCAGATTGCCTTTAGATGTCGATTTTGATGGAAAAAGTAAATTGATTCCAGAGTGTGACTACTATTGCGATACAAAGTATTTGTTACCTTATTCAAGTTTTGTCAATTTGCCAGCAGAAATTGTGCCTGCTGGAATTGATACCTCTTCAGCAATTTCAAATGGAGTTAATTCTGAACTTCCACAAGGTTGCTCCAGTAGAGAGTCTAGTAAACCAGAAGTCAGATTGCTAGATTTATATTCTGGCTGTGGTGGAATGTCGACTGGCCTATGCCTTGGTGCATGTTCTGCTGGCGTTAATCTTGTTACTAAATGGGCAGTTGATGTGAACAAGCATGCTTGTGAAAGTCTGAAGTTTAACCATCCTGAAACAATGGTTCGAAATGAATCTGCCGAAGATTTTCTTTCATTGCTAAAACAATGGGAACAACTCTGCATCTGTTTTAATTTTGTCGGAACAAATGAATCAGAGATGCATGGGTTCAATTTCTTCTTAAAAACAGAAGATACTGAAGATGAAGATGAAATAATTGGCACTGATAATGAAGCTTCGGAAGTCTATGAAGTAGCACAAGTACTAGAAATATGTTATGGTGATCCCAACCATATCAAAGAGAGGGGATTGTACTGTAAGATCCGGTGGAAGGGCTATGGTGCTGATGAGGACACCTGGGAGCCTATTGAGGAACTGAGTCATTGTAAAGAGCGGGTACAAGAGTTTGTTTCTCAGGGTTATTCATCAAATCTATTGCCCTTACCTGGTGATGTGGATGTGATCTGTGGTGGACCACCATGCCAAGGAATAAGTGGATTTAACAGGTTTAGGAACGAAGAAGATCCATTGGATGATGAAAAAAACAAACAATTGAAAGTTTTCATGGATTTAGTTCAGTACCTTAAGCCCAAGTACGTTTTAATGGAAAATGTGGTTGACCTCGTGAAATTTGCTGATGGGTTCCTTGGTCGTTATGCATTGGGACGTCTTGTTCACATGAACTATCAAGCAAGGATGGGCATCATGGCAGCTGGGGCATATGGACTTCCGCAGTTTCGTTTGCGTATCTTTATGTGGGGAGCCCAGCCTACTGAGAGGTTGCCTCAATATCCATATCCGACTCACGATGTTGTAGTAAGGGGTTGCATACCTACTGAATTTGAGAGAAATACTGTCGCTTATGATGAAGGTCAAAATGTCAAACTAGAGAAAAAGCTCTTCCTCGCGGATGCGATTTCTGATCTTCCCCCTGTTGAGAATAATGAAAACCAGGATGAAATGCCCTATGGGGAACCTCCCCAAACAGATTTTCAGAAGTGTATCAGACTCAGCAAGAATTATCTACTAGGTGTTCATGTGCGTGATGGTGTAGTGGAGTGGGATCCTGATGTAGACAGAGAGTATTTGGATTCGGGGAAACCATTGGTACCTAATTATGCTGTGAGTTTCAGGAATGGGACTTCAAAAAAGCCTTTTGCTCGGTTGTGGTGGGATGAGACTGTACCAACAGTTGTTACACGGGCCGAGCCACATAATCAGCACCAGGATTCTACATCAAAGGTTCTTATTAGTGAACCTGCTGGTTCAATCCTATTTTATGTTCGTCCTAGGTACCTTGCATTTTCTTGGCCCGAACGATGTAAAGAACATAATCATAGCTCAATTTACAAGAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

735

Amino Acids

83.15

Weight (kDa)

5.06

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	109 - 201	1.3e-08	BAH domain
Chromo	PF00385	364 - 419	1.1e-09	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	429 - 549	9.9e-18	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
AatII	GACGTC	1 cut(s)	1513
Acc36I	ACCTGC	2 cut(s)	196, 2110
Acc65I	GGTACC	2 cut(s)	1951, 2136
AccB1I	GGYRCC	2 cut(s)	1951, 2136
AccBSI	CCGCTC	1 cut(s)	1237
AccI	GTMKAC	2 cut(s)	791, 1917
AccII	CGCG	2 cut(s)	424, 1751
AciI	CCGC	5 cut(s)	13, 82, 1237, 1574, 1751
AclWI	GGATC	7 cut(s)	394, 452, 1121, 1159, 1361, 1901, 1914
AcsI	RAATTY	5 cut(s)	241, 365, 468, 1472, 1682
AcuI	CTGAAG	4 cut(s)	33, 663, 902, 1062
AcvI	CACGTG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	1510
AfiI	CCNNNNNNNGG	5 cut(s)	12, 81, 1174, 1289, 1328
AflII	CTTAAG	1 cut(s)	1427
AgsI	TTSAA	8 cut(s)	152, 488, 627, 690, 1015, 1399, 1989, 2112
AjnI	CCWGG	5 cut(s)	92, 1199, 1288, 1794, 2067
AjuI	GAANNNNNNNTTGG	2 cut(s)	1818, 1850
AloI	GAACNNNNNNTCC	4 cut(s)	116, 148, 1500, 1532
AluBI	AGCT	8 cut(s)	101, 186, 254, 523, 1079, 1556, 1741, 2184
AluI	AGCT	8 cut(s)	101, 186, 254, 523, 1079, 1556, 1741, 2184
Alw26I	GTCTC	1 cut(s)	2015
AlwI	GGATC	7 cut(s)	394, 452, 1121, 1159, 1361, 1901, 1914
AoxI	GGCC	7 cut(s)	33, 118, 139, 176, 796, 2046, 2153
ApeKI	GCWGC	1 cut(s)	1553
ApoI	RAATTY	5 cut(s)	241, 365, 468, 1472, 1682
Asp700I	GAANNNNTTC	3 cut(s)	510, 930, 1403
Asp718I	GGTACC	2 cut(s)	1951, 2136
AspA2I	CCTAGG	1 cut(s)	2132
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	6 cut(s)	119, 140, 177, 1316, 2046, 2154
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	125, 1136, 1304
AsuII	TTCGAA	2 cut(s)	56, 910
AvaII	GGWCC	1 cut(s)	1316
AvrII	CCTAGG	1 cut(s)	2132
BaeI	ACNNNNGTAYC	2 cut(s)	1232, 1265
BamHI	GGATCC	1 cut(s)	1906
BanI	GGYRCC	2 cut(s)	1951, 2136
BanII	GRGCYC	2 cut(s)	129, 1609
BauI	CACGAG	1 cut(s)	1466
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	23, 39
BbvI	GCAGC	1 cut(s)	1565
BccI	CCATC	9 cut(s)	104, 168, 278, 377, 554, 900, 1475, 1534, 1883
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	5 cut(s)	94, 1201, 1290, 1796, 2069
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	2015
BfaI	CTAG	8 cut(s)	255, 362, 738, 761, 1109, 1730, 1871, 2133
BfrI	CTTAAG	1 cut(s)	1427
BfuAI	ACCTGC	2 cut(s)	196, 2110
BisI	GCNGC	1 cut(s)	1554
BlnI	CCTAGG	1 cut(s)	2132
BlsI	GCNGC	1 cut(s)	1555
BmcAI	AGTACT	1 cut(s)	1107
Bme1390I	CCNGG	6 cut(s)	94, 122, 1201, 1290, 1796, 2069
Bme18I	GGWCC	1 cut(s)	1316
BmgT120I	GGNCC	6 cut(s)	119, 140, 177, 1316, 2046, 2154
BmiI	GGNNCC	8 cut(s)	126, 1206, 1487, 1606, 1818, 1908, 1953, 2138
BmrFI	CCNGG	6 cut(s)	94, 122, 1201, 1290, 1796, 2069
BmsI	GCATC	5 cut(s)	192, 975, 993, 1554, 1744
BpiI	GAAGAC	2 cut(s)	23, 39
BplI	GAGNNNNNCTC	2 cut(s)	1612, 1644
BpmI	CTGGAG	1 cut(s)	709
Bpu14I	TTCGAA	2 cut(s)	56, 910
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	1544
BsaHI	GRCGYC	1 cut(s)	1510
BsaJI	CCNNGG	6 cut(s)	36, 805, 1200, 1327, 1489, 2132
BsaWI	WCCGGW	1 cut(s)	1167
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 81, 1174, 1289, 1328
Bse1I	ACTGG	2 cut(s)	726, 799
Bse3DI	GCAATG	1 cut(s)	938
Bse8I	GATNNNNATC	1 cut(s)	1544
BseBI	CCWGG	5 cut(s)	94, 1201, 1290, 1796, 2069
BseDI	CCNNGG	6 cut(s)	36, 805, 1200, 1327, 1489, 2132
BseGI	GGATG	8 cut(s)	289, 892, 1306, 1381, 1545, 1759, 1804, 2023
BseJI	GATNNNNATC	1 cut(s)	1544
BseLI	CCNNNNNNNGG	5 cut(s)	12, 81, 1174, 1289, 1328
BseMI	GCAATG	1 cut(s)	938
BseMII	CTCAG	4 cut(s)	1211, 1271, 1608, 1867
BseNI	ACTGG	2 cut(s)	726, 799
BseXI	GCAGC	1 cut(s)	1565
BseYI	CCCAGC	2 cut(s)	1556, 1608
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	424, 1751
BshFI	GGCC	7 cut(s)	35, 120, 141, 178, 798, 2048, 2155
BshNI	GGYRCC	2 cut(s)	1951, 2136
BsiSI	CCGG	2 cut(s)	122, 1168
BslFI	GGGAC	2 cut(s)	1521, 1996
BslI	CCNNNNNNNGG	5 cut(s)	12, 81, 1174, 1289, 1328
BsmAI	GTCTC	1 cut(s)	2015
BsmFI	GGGAC	2 cut(s)	1521, 1996
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	7 cut(s)	35, 120, 141, 178, 798, 2048, 2155
Bsp119I	TTCGAA	2 cut(s)	56, 910
Bsp1286I	GDGCHC	2 cut(s)	129, 1609
BspACI	CCGC	5 cut(s)	13, 82, 1237, 1574, 1751
BspANI	GGCC	7 cut(s)	35, 120, 141, 178, 798, 2048, 2155
BspCNI	CTCAG	4 cut(s)	1212, 1270, 1609, 1866
BspFNI	CGCG	2 cut(s)	424, 1751
BspLI	GGNNCC	8 cut(s)	126, 1206, 1487, 1606, 1818, 1908, 1953, 2138
BspMI	ACCTGC	2 cut(s)	196, 2110
BspPI	GGATC	7 cut(s)	394, 452, 1121, 1159, 1361, 1901, 1914
BspQI	GCTCTTC	1 cut(s)	1748
BspT104I	TTCGAA	2 cut(s)	56, 910
BspT107I	GGYRCC	2 cut(s)	1951, 2136
BspTI	CTTAAG	1 cut(s)	1427
BsrBI	CCGCTC	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	938
BsrI	ACTGG	2 cut(s)	726, 799
BssECI	CCNNGG	6 cut(s)	36, 805, 1200, 1327, 1489, 2132
BssNI	GRCGYC	1 cut(s)	1510
BssSI	CACGAG	1 cut(s)	1466
BssT1I	CCWWGG	4 cut(s)	805, 1327, 1489, 2132
Bst2BI	CACGAG	1 cut(s)	1466
Bst2UI	CCWGG	5 cut(s)	94, 1201, 1290, 1796, 2069
Bst4CI	ACNGT	5 cut(s)	433, 1160, 1699, 2026, 2035
Bst6I	CTCTTC	2 cut(s)	682, 1748
BstACI	GRCGYC	1 cut(s)	1510
BstAFI	CTTAAG	1 cut(s)	1427
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	319
BstBI	TTCGAA	2 cut(s)	56, 910
BstC8I	GCNNGC	7 cut(s)	68, 166, 170, 645, 660, 823, 867
BstDEI	CTNAG	4 cut(s)	1220, 1257, 1617, 1853
BstF5I	GGATG	8 cut(s)	289, 892, 1306, 1381, 1545, 1759, 1804, 2023
BstFNI	CGCG	2 cut(s)	424, 1751
BstHHI	GCGC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	2015
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 818, 1559
BstNI	CCWGG	5 cut(s)	94, 1201, 1290, 1796, 2069
BstNSI	RCATGY	2 cut(s)	816, 869
BstSCI	CCNGG	6 cut(s)	92, 120, 1199, 1288, 1794, 2067
BstUI	CGCG	2 cut(s)	424, 1751
BstV1I	GCAGC	1 cut(s)	1565
BstV2I	GAAGAC	2 cut(s)	23, 39
BstX2I	RGATCY	4 cut(s)	457, 1164, 1366, 1906
BstYI	RGATCY	4 cut(s)	457, 1164, 1366, 1906
BsuRI	GGCC	7 cut(s)	35, 120, 141, 178, 798, 2048, 2155
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	8 cut(s)	289, 892, 1306, 1381, 1545, 1759, 1804, 2023
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 1065
BveI	ACCTGC	2 cut(s)	196, 2110
Cac8I	GCNNGC	7 cut(s)	68, 166, 170, 645, 660, 823, 867
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	6 cut(s)	119, 140, 177, 1316, 2046, 2154
CseI	GACGC	2 cut(s)	170, 320
CsiI	ACCWGGT	1 cut(s)	1288
CviAII	CATG	8 cut(s)	813, 866, 1007, 1323, 1408, 1522, 1549, 1880
DdeI	CTNAG	4 cut(s)	1220, 1257, 1617, 1853
Eam1104I	CTCTTC	2 cut(s)	682, 1748
EarI	CTCTTC	2 cut(s)	682, 1748
Eco130I	CCWWGG	4 cut(s)	805, 1327, 1489, 2132
Eco24I	GRGCYC	2 cut(s)	129, 1609
Eco47I	GGWCC	1 cut(s)	1316
Eco57I	CTGAAG	4 cut(s)	33, 663, 902, 1062
Eco72I	CACGTG	1 cut(s)	319
EcoRII	CCWGG	5 cut(s)	92, 1199, 1288, 1794, 2067
EcoT14I	CCWWGG	4 cut(s)	805, 1327, 1489, 2132
EcoT22I	ATGCAT	2 cut(s)	1008, 1504
EcoT38I	GRGCYC	2 cut(s)	129, 1609
ErhI	CCWWGG	4 cut(s)	805, 1327, 1489, 2132
FaeI	CATG	8 cut(s)	816, 869, 1010, 1326, 1411, 1525, 1552, 1883
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FaqI	GGGAC	2 cut(s)	1521, 1996
FatI	CATG	8 cut(s)	812, 865, 1006, 1322, 1407, 1521, 1548, 1879
FauI	CCCGC	1 cut(s)	1230
FauNDI	CATATG	1 cut(s)	1564
FblI	GTMKAC	2 cut(s)	791, 1917
Fnu4HI	GCNGC	1 cut(s)	1554
FokI	GGATG	8 cut(s)	296, 879, 1313, 1388, 1552, 1766, 1811, 2030
FriOI	GRGCYC	2 cut(s)	129, 1609
Fsp4HI	GCNGC	1 cut(s)	1554
FspBI	CTAG	8 cut(s)	255, 362, 738, 761, 1109, 1730, 1871, 2133
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	1554
GsaI	CCCAGC	2 cut(s)	1560, 1612
GsuI	CTGGAG	1 cut(s)	709
HaeIII	GGCC	7 cut(s)	35, 120, 141, 178, 798, 2048, 2155
HapII	CCGG	2 cut(s)	122, 1168
HgaI	GACGC	2 cut(s)	170, 320
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	1510
Hin1II	CATG	8 cut(s)	816, 869, 1010, 1326, 1411, 1525, 1552, 1883
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	3 cut(s)	90, 792, 1462
HindII	GTYRAC	3 cut(s)	90, 792, 1462
HindIII	AAGCTT	2 cut(s)	521, 1077
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	122, 1168
HphI	GGTGA	3 cut(s)	125, 1136, 1304
Hpy188III	TCNNGA	9 cut(s)	152, 362, 488, 581, 896, 1468, 1649, 1910, 1975
Hpy99I	CGWCG	3 cut(s)	161, 164, 197
HpyAV	CCTTC	5 cut(s)	55, 158, 521, 1168, 1706
HpyCH4III	ACNGT	5 cut(s)	433, 1160, 1699, 2026, 2035
HpyCH4IV	ACGT	3 cut(s)	318, 1440, 1510
HpyCH4V	TGCA	9 cut(s)	205, 377, 404, 812, 966, 1006, 1502, 1671, 2144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 818, 1559
HpyF3I	CTNAG	4 cut(s)	1220, 1257, 1617, 1853
HpySE526I	ACGT	3 cut(s)	318, 1440, 1510
Hsp92I	GRCGYC	1 cut(s)	1510
Hsp92II	CATG	8 cut(s)	816, 869, 1010, 1326, 1411, 1525, 1552, 1883
HspAI	GCGC	1 cut(s)	422
KpnI	GGTACC	2 cut(s)	1955, 2140
KspAI	GTTAAC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	1748
LmnI	GCTCC	4 cut(s)	124, 728, 1204, 1604
Lsp1109I	GCAGC	1 cut(s)	1565
LweI	GCATC	5 cut(s)	192, 975, 993, 1554, 1744
MabI	ACCWGGT	1 cut(s)	1288
MaeI	CTAG	8 cut(s)	255, 362, 738, 761, 1109, 1730, 1871, 2133
MaeII	ACGT	3 cut(s)	318, 1440, 1510
MaeIII	GTNAC	6 cut(s)	113, 260, 587, 615, 835, 2038
MbiI	CCGCTC	1 cut(s)	1237
MfeI	CAATTG	2 cut(s)	378, 1394
MflI	RGATCY	4 cut(s)	457, 1164, 1366, 1906
MhlI	GDGCHC	2 cut(s)	129, 1609
MlyI	GAGTC	4 cut(s)	743, 1231, 1639, 1845
MmeI	TCCRAC	3 cut(s)	85, 964, 1667
Mph1103I	ATGCAT	2 cut(s)	1008, 1504
MroXI	GAANNNNTTC	3 cut(s)	510, 930, 1403
MslI	CAYNNNNRTG	2 cut(s)	870, 1884
MspA1I	CMGCKG	2 cut(s)	82, 1556
MspCI	CTTAAG	1 cut(s)	1427
MspI	CCGG	2 cut(s)	122, 1168
MspR9I	CCNGG	6 cut(s)	94, 122, 1201, 1290, 1796, 2069
MunI	CAATTG	2 cut(s)	378, 1394
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	5 cut(s)	94, 1201, 1290, 1796, 2069
MvnI	CGCG	2 cut(s)	424, 1751
MwoI	GCNNNNNNNGC	3 cut(s)	10, 818, 1559
NciI	CCSGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	1564
NlaIII	CATG	8 cut(s)	816, 869, 1010, 1326, 1411, 1525, 1552, 1883
NlaIV	GGNNCC	8 cut(s)	126, 1206, 1487, 1606, 1818, 1908, 1953, 2138
NmeAIII	GCCGAG	2 cut(s)	17, 2074
NmuCI	GTSAC	3 cut(s)	113, 260, 587
NsiI	ATGCAT	2 cut(s)	1008, 1504
NspI	RCATGY	2 cut(s)	816, 869
NspV	TTCGAA	2 cut(s)	56, 910
PaeI	GCATGC	1 cut(s)	869
PaqCI	CACCTGC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	1748
PctI	GAATGC	1 cut(s)	512
PdmI	GAANNNNTTC	3 cut(s)	510, 930, 1403
PfeI	GAWTC	7 cut(s)	53, 484, 577, 917, 995, 1934, 2072
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	1555
PleI	GAGTC	4 cut(s)	742, 1230, 1639, 1845
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	4 cut(s)	742, 1230, 1639, 1845
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	5 cut(s)	92, 1199, 1288, 1794, 2067
PspCI	CACGTG	1 cut(s)	319
PspFI	CCCAGC	2 cut(s)	1556, 1608
PspGI	CCWGG	5 cut(s)	92, 1199, 1288, 1794, 2067
PspN4I	GGNNCC	8 cut(s)	126, 1206, 1487, 1606, 1818, 1908, 1953, 2138
PspPI	GGNCC	6 cut(s)	119, 140, 177, 1316, 2046, 2154
PsuI	RGATCY	4 cut(s)	457, 1164, 1366, 1906
PsyI	GACNNNGTC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	1556
RseI	CAYNNNNRTG	2 cut(s)	870, 1884
SalI	GTCGAC	1 cut(s)	790
SapI	GCTCTTC	1 cut(s)	1748
SatI	GCNGC	1 cut(s)	1554
Sau96I	GGNCC	6 cut(s)	119, 140, 177, 1316, 2046, 2154
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	4 cut(s)	743, 1231, 1639, 1845
ScrFI	CCNGG	6 cut(s)	94, 122, 1201, 1290, 1796, 2069
SduI	GDGCHC	2 cut(s)	129, 1609
SexAI	ACCWGGT	1 cut(s)	1288
SfaNI	GCATC	5 cut(s)	192, 975, 993, 1554, 1744
SfuI	TTCGAA	2 cut(s)	56, 910
SinI	GGWCC	1 cut(s)	1316
SmiMI	CAYNNNNRTG	2 cut(s)	870, 1884
SmlI	CTYRAG	1 cut(s)	1427
SmoI	CTYRAG	1 cut(s)	1427
SphI	GCATGC	1 cut(s)	869
SsiI	CCGC	5 cut(s)	13, 82, 1237, 1574, 1751
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	8 cut(s)	255, 362, 738, 761, 1109, 1730, 1871, 2133
StyD4I	CCNGG	6 cut(s)	92, 120, 1199, 1288, 1794, 2067
StyI	CCWWGG	4 cut(s)	805, 1327, 1489, 2132
TaaI	ACNGT	5 cut(s)	433, 1160, 1699, 2026, 2035
TaiI	ACGT	3 cut(s)	321, 1443, 1513
TaqI	TCGA	4 cut(s)	56, 552, 791, 910
TatI	WGTACW	2 cut(s)	1105, 1155
TfiI	GAWTC	7 cut(s)	53, 484, 577, 917, 995, 1934, 2072
TscAI	CASTG	2 cut(s)	379, 1072
TseFI	GTSAC	3 cut(s)	113, 260, 587
TseI	GCWGC	1 cut(s)	1553
Tsp45I	GTSAC	3 cut(s)	113, 260, 587
TspRI	CASTG	2 cut(s)	379, 1072
Tth111I	GACNNNGTC	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	1427
VpaK11BI	GGWCC	1 cut(s)	1316
XapI	RAATTY	5 cut(s)	241, 365, 468, 1472, 1682
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	816, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1334
XmaJI	CCTAGG	1 cut(s)	2132
XmiI	GTMKAC	2 cut(s)	791, 1917
XmnI	GAANNNNTTC	3 cut(s)	510, 930, 1403
XspI	CTAG	8 cut(s)	255, 362, 738, 761, 1109, 1730, 1871, 2133
ZraI	GACGTC	1 cut(s)	1511
ZrmI	AGTACT	1 cut(s)	1107
Zsp2I	ATGCAT	2 cut(s)	1008, 1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.