Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

52176525 .. 52180343

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGAAATCTCTTCTCTATCCACACCCTCTTTCTCTCACCTCCATCTCCACCGCCAAACCCCAACACCTCACTCTCTCCCACACCCGAACATTCCTCAAACTCCCGGCCAATCACGGCGACCGTTCCGCCGTTAGAAACCCAGCTCTGACCGTCAGAGCCGCTCTCGACTCCGTCACGGCCGTTAACCAATCCGGAATTTCATTGCCGGATGCCAGAAATCCAACGGTTTCATCTTCTTATAGAGACTCCAAGTTGCCGAGGCCGAATCCGACGGTGCTGGAAGCTCAGACTAGGGTTTGCACCGGCCCTACCCAGACCAAGCCTCTCGGCGAGGACCAGGCGATGAAGGTACTCGACACCATTCTCAGATCCGCCACCGGAGCGCTGAAGGATGAGGAGCCAGTCTCCAAGGTGCAGCTCGGAGCGTTCTTCGCCGCCATGACGATTCGCGCCAATTGTTTCCCGGAGGCGACGCAATGGAGCGAAGGCGAGACGCGAGCGATGGACAGGTACTGGCCGCTTCTGGTCCGTGCGCTGCCGCCGGACGTGGTGTTCATCGCCGACCCGGAGGGGTCGTTGATGGGGATAGGAAGCTCGATCGGGCCGCAATTCGTTGGGAACGGGACGAGTGATATGAGACTGGTCGGGGCTCTCCGGGAGGTCTTGGCCGGCGGCCACCTCGGGTATGAGGAAGTGCAAGGTGTTTTGAAAGACGTTCTGCCGTTGAAATCGACGACGGAGGATGGGACGTCCGCCGGAGTAAGTGAATCATTGCTTTCGGCATTGTTAATAGGTCAGCGTATGAACAGAGAAACAGACCGTGAATTAAAAGCTTACTGCCTTGCATTTGATGATGAACTTGGTGAAACTCCGATTGCTGATGTGAAATCATTAACTCACTATGGTGAACCTTATGATGGAAACACTCGTTTCTTTCGTAGCACATTGTTTGTTTCTGCGGTTAGGTCTTGTTATGCTGAATCATCCCTGCTTCATGGTGCTGAATGGATGCCTCCAAAGGGAGGTGTTACTGAAGAACAAATGCTCAAGTTCATGGGAGCAGATACGAGCTTGACCCCGTCGCAGGCAAAAGTACTTCTAGAGGATGAAGAAGTTGGGTTTGCTTATATAAGTCATCGCGAAGCCCGCCCATCTCTATATTCATTATTAAAGTTGAGGGAGCATATCAAGAAACGCCCCCCACTGGCAACATCTGAAAAGGTTCAGCAATTTGTGAAGGCCCGGGGGAAGGAAGCAATTGTCACCGGATTTTATCATGAAGGTTATGAGGATTCACTCTTAATGCTTATGAAAAGAAGAGGTGTTCATTCTGGCTTGGTGGTGAAGGGTGAGGAAGGGGCCCTCTCAATGACAACGAGATTGCGCTCAGTAAATTCATCAAAAGGAATTCCTGTAAACTACTGTTCAGGGTTCCGTTCACTGAGCATGGCTTCTGCTTGTGAAGTTGATGGGGTTTCACGTCAGAGTTTTAACCTGGAGGTTAATGCCGTAGACTACGGTTTCGAACCCACTGATACCCCAAGAACTGACAGATCGGTCTTGAAGAATATAGAGTTGGGTTTAACAGCTCTTCATGGTCAAAAGGGACCGGCTTATGATCGAATAGTCTTGAATGCTGGAATGGTTGATCACTTGCTCGGATGTGATGGTGCAGAAGACATATCTGTGGCCCTGGATAGAGCCAGAGAGGCTATTGACAGTGGCAAGGCTCTAGAAAGGCTCTGGAATTACATAAAGGTATCTAAACAAGTGAGACACAGGCCTGCCATGTGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

599

Amino Acids

65.4

Weight (kDa)

6.72

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1556
AatII	GACGTC	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	1512
AccII	CGCG	3 cut(s)	450, 496, 1140
AccIII	TCCGGA	1 cut(s)	191
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	5 cut(s)	105, 177, 515, 666, 673
AcsI	RAATTY	3 cut(s)	195, 1393, 1407
AcuI	CTGAAG	2 cut(s)	407, 1053
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	3 cut(s)	351, 512, 1095
AfeI	AGCGCT	1 cut(s)	384
AfiI	CCNNNNNNNGG	6 cut(s)	917, 1019, 1022, 1084, 1204, 1249
AgsI	TTSAA	4 cut(s)	709, 727, 1564, 1633
AjiI	CACGTC	2 cut(s)	547, 1481
AjnI	CCWGG	3 cut(s)	336, 1494, 1692
AjuI	GAANNNNNNNTTGG	2 cut(s)	1559, 1591
AleI	CACNNNNGTG	1 cut(s)	903
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	7 cut(s)	143, 284, 418, 594, 833, 1071, 1589
AluI	AGCT	7 cut(s)	143, 284, 418, 594, 833, 1071, 1589
Alw26I	GTCTC	5 cut(s)	237, 409, 485, 631, 1768
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	513
Ama87I	CYCGRG	2 cut(s)	680, 1242
Aor13HI	TCCGGA	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	384
ApaI	GGGCCC	1 cut(s)	1363
ApeKI	GCWGC	2 cut(s)	415, 535
ApoI	RAATTY	3 cut(s)	195, 1393, 1407
ArsI	GACNNNNNNTTYG	2 cut(s)	1505, 1537
Asp700I	GAANNNNTTC	1 cut(s)	1221
AspLEI	GCGC	4 cut(s)	385, 452, 535, 1386
AspS9I	GGNCC	9 cut(s)	305, 334, 526, 602, 1240, 1359, 1360, 1607, 1690
AsuC2I	CCSGG	6 cut(s)	104, 464, 566, 656, 1243, 1244
AsuHPI	GGTGA	6 cut(s)	28, 875, 917, 1255, 1354, 1361
AsuII	TTCGAA	1 cut(s)	1524
AvaI	CYCGRG	2 cut(s)	680, 1242
AvaII	GGWCC	3 cut(s)	334, 526, 1607
BaeGI	GKGCMC	1 cut(s)	1363
BanII	GRGCYC	2 cut(s)	652, 1363
BbsI	GAAGAC	1 cut(s)	1683
BbvI	GCAGC	2 cut(s)	427, 522
BccI	CCATC	8 cut(s)	50, 496, 574, 737, 911, 1159, 1463, 1661
BceAI	ACGGC	6 cut(s)	113, 130, 164, 192, 706, 1493
BciT130I	CCWGG	3 cut(s)	338, 1496, 1694
BclI	TGATCA	1 cut(s)	1648
BcnI	CCSGG	6 cut(s)	104, 464, 566, 656, 1243, 1244
BcoDI	GTCTC	5 cut(s)	237, 409, 485, 631, 1768
BfaI	CTAG	3 cut(s)	291, 1100, 1733
BfoI	RGCGCY	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	1709
BisI	GCNGC	8 cut(s)	159, 416, 435, 518, 536, 539, 605, 673
BlsI	GCNGC	8 cut(s)	160, 417, 436, 519, 537, 540, 606, 674
BmcAI	AGTACT	1 cut(s)	1095
Bme1390I	CCNGG	9 cut(s)	104, 338, 464, 566, 656, 1243, 1244, 1496, 1694
Bme18I	GGWCC	3 cut(s)	334, 526, 1607
BmeT110I	CYCGRG	2 cut(s)	680, 1242
BmgBI	CACGTC	2 cut(s)	547, 1481
BmgT120I	GGNCC	9 cut(s)	305, 334, 526, 602, 1240, 1359, 1360, 1607, 1690
BmiI	GGNNCC	5 cut(s)	399, 1360, 1361, 1433, 1608
BmrFI	CCNGG	9 cut(s)	104, 338, 464, 566, 656, 1243, 1244, 1496, 1694
BmsI	GCATC	2 cut(s)	199, 999
BpiI	GAAGAC	1 cut(s)	1683
BplI	GAGNNNNNCTC	4 cut(s)	147, 179, 389, 421
BpmI	CTGGAG	1 cut(s)	1517
Bpu14I	TTCGAA	1 cut(s)	1524
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	6 cut(s)	104, 464, 566, 656, 1243, 1244
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	6 cut(s)	257, 408, 679, 1242, 1243, 1692
BsaWI	WCCGGW	3 cut(s)	191, 377, 1265
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	6 cut(s)	917, 1019, 1022, 1084, 1204, 1249
Bse118I	RCCGGY	3 cut(s)	302, 668, 1609
Bse1I	ACTGG	4 cut(s)	401, 518, 645, 1209
Bse3DI	GCAATG	3 cut(s)	200, 482, 770
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	338, 1496, 1694
BseDI	CCNNGG	6 cut(s)	257, 408, 679, 1242, 1243, 1692
BseGI	GGATG	7 cut(s)	214, 397, 748, 983, 1014, 1111, 1667
BseLI	CCNNNNNNNGG	6 cut(s)	917, 1019, 1022, 1084, 1204, 1249
BseMI	GCAATG	3 cut(s)	200, 482, 770
BseMII	CTCAG	4 cut(s)	299, 379, 1401, 1433
BseNI	ACTGG	4 cut(s)	401, 518, 645, 1209
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	1363
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	427, 522
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	2 cut(s)	434, 1692
Bsh1236I	CGCG	3 cut(s)	450, 496, 1140
Bsh1285I	CGRYCG	3 cut(s)	121, 180, 600
BsiEI	CGRYCG	3 cut(s)	121, 180, 600
BsiHKCI	CYCGRG	2 cut(s)	680, 1242
BslFI	GGGAC	3 cut(s)	637, 760, 1620
BslI	CCNNNNNNNGG	6 cut(s)	917, 1019, 1022, 1084, 1204, 1249
BsmAI	GTCTC	5 cut(s)	237, 409, 485, 631, 1768
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	3 cut(s)	637, 760, 1620
BsmI	GAATGC	1 cut(s)	1639
BsoBI	CYCGRG	2 cut(s)	680, 1242
Bsp119I	TTCGAA	1 cut(s)	1524
Bsp120I	GGGCCC	1 cut(s)	1359
Bsp1286I	GDGCHC	2 cut(s)	652, 1363
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
Bsp68I	TCGCGA	1 cut(s)	1140
BspCNI	CTCAG	4 cut(s)	298, 378, 1400, 1434
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	3 cut(s)	450, 496, 1140
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	5 cut(s)	399, 1360, 1361, 1433, 1608
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	1596
BspT104I	TTCGAA	1 cut(s)	1524
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	3 cut(s)	200, 482, 770
BsrFI	RCCGGY	3 cut(s)	302, 668, 1609
BsrI	ACTGG	4 cut(s)	401, 518, 645, 1209
BssAI	RCCGGY	3 cut(s)	302, 668, 1609
BssECI	CCNNGG	6 cut(s)	257, 408, 679, 1242, 1243, 1692
BssMI	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	3 cut(s)	338, 1496, 1694
Bst4CI	ACNGT	8 cut(s)	122, 151, 226, 274, 821, 1424, 1520, 1721
Bst6I	CTCTTC	3 cut(s)	15, 1312, 1596
BstACI	GRCGYC	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	1524
BstC8I	GCNNGC	5 cut(s)	498, 670, 1086, 1147, 1785
BstDEI	CTNAG	4 cut(s)	285, 365, 1387, 1442
BstF5I	GGATG	7 cut(s)	214, 397, 748, 983, 1014, 1111, 1667
BstFNI	CGCG	3 cut(s)	450, 496, 1140
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	4 cut(s)	385, 452, 535, 1386
BstKTI	GATC	5 cut(s)	371, 600, 1556, 1621, 1651
BstMAI	GTCTC	5 cut(s)	237, 409, 485, 631, 1768
BstMBI	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
BstMCI	CGRYCG	3 cut(s)	121, 180, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 431, 1146, 1709
BstNI	CCWGG	3 cut(s)	338, 1496, 1694
BstSCI	CCNGG	9 cut(s)	102, 336, 462, 564, 654, 1241, 1242, 1494, 1692
BstSLI	GKGCMC	1 cut(s)	1363
BstUI	CGCG	3 cut(s)	450, 496, 1140
BstV1I	GCAGC	2 cut(s)	427, 522
BstV2I	GAAGAC	1 cut(s)	1683
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BstZI	CGGCCG	1 cut(s)	177
BtgZI	GCGATG	4 cut(s)	356, 515, 541, 1121
BtrI	CACGTC	2 cut(s)	547, 1481
BtsCI	GGATG	7 cut(s)	214, 397, 748, 983, 1014, 1111, 1667
BtsIMutI	CAGTG	4 cut(s)	1202, 1439, 1530, 1726
BtuMI	TCGCGA	1 cut(s)	1140
Cac8I	GCNNGC	5 cut(s)	498, 670, 1086, 1147, 1785
CaiI	CAGNNNCTG	1 cut(s)	513
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	4 cut(s)	385, 452, 535, 1386
Cfr10I	RCCGGY	3 cut(s)	302, 668, 1609
Cfr13I	GGNCC	9 cut(s)	305, 334, 526, 602, 1240, 1359, 1360, 1607, 1690
Cfr9I	CCCGGG	1 cut(s)	1242
CseI	GACGC	2 cut(s)	481, 502
Csp6I	GTAC	3 cut(s)	350, 511, 1094
CviAII	CATG	7 cut(s)	439, 995, 1054, 1277, 1447, 1595, 1789
CviQI	GTAC	3 cut(s)	350, 511, 1094
DdeI	CTNAG	4 cut(s)	285, 365, 1387, 1442
DpnI	GATC	5 cut(s)	370, 599, 1555, 1620, 1650
DpnII	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
DrdI	GACNNNNNNGTC	1 cut(s)	1556
DseDI	GACNNNNNNGTC	1 cut(s)	1556
EaeI	YGGCCR	5 cut(s)	105, 177, 515, 666, 673
EagI	CGGCCG	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	15, 1312, 1596
EarI	CTCTTC	3 cut(s)	15, 1312, 1596
EciI	GGCGGA	3 cut(s)	115, 361, 742
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	1783
Eco24I	GRGCYC	2 cut(s)	652, 1363
Eco47I	GGWCC	3 cut(s)	334, 526, 1607
Eco47III	AGCGCT	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	407, 1053
Eco88I	CYCGRG	2 cut(s)	680, 1242
EcoO109I	RGGNCCY	2 cut(s)	1359, 1360
EcoRI	GAATTC	1 cut(s)	1407
EcoRII	CCWGG	3 cut(s)	336, 1494, 1692
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	652, 1363
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	7 cut(s)	442, 998, 1057, 1280, 1450, 1598, 1792
FaqI	GGGAC	3 cut(s)	637, 760, 1620
FatI	CATG	7 cut(s)	438, 994, 1053, 1276, 1446, 1594, 1788
FauI	CCCGC	1 cut(s)	1154
FbaI	TGATCA	1 cut(s)	1648
FblI	GTMKAC	1 cut(s)	1512
Fnu4HI	GCNGC	8 cut(s)	159, 416, 435, 518, 536, 539, 605, 673
FokI	GGATG	7 cut(s)	221, 404, 755, 970, 1021, 1118, 1674
FriOI	GRGCYC	2 cut(s)	652, 1363
Fsp4HI	GCNGC	8 cut(s)	159, 416, 435, 518, 536, 539, 605, 673
FspBI	CTAG	3 cut(s)	291, 1100, 1733
GlaI	GCGC	4 cut(s)	384, 451, 534, 1385
GluI	GCNGC	8 cut(s)	159, 416, 435, 518, 536, 539, 605, 673
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	1517
HaeII	RGCGCY	1 cut(s)	386
HgaI	GACGC	2 cut(s)	481, 502
HhaI	GCGC	4 cut(s)	385, 452, 535, 1386
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	7 cut(s)	442, 998, 1057, 1280, 1450, 1598, 1792
Hin6I	GCGC	4 cut(s)	383, 450, 533, 1384
HinP1I	GCGC	4 cut(s)	383, 450, 533, 1384
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	7 cut(s)	167, 245, 265, 445, 767, 980, 1292
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	6 cut(s)	28, 875, 917, 1255, 1354, 1361
Hpy166II	GTNNAC	5 cut(s)	184, 908, 1417, 1439, 1513
Hpy8I	GTNNAC	5 cut(s)	184, 908, 1417, 1439, 1513
Hpy99I	CGWCG	5 cut(s)	274, 475, 736, 739, 1084
HpyAV	CCTTC	8 cut(s)	340, 382, 479, 1231, 1243, 1274, 1339, 1349
HpyCH4III	ACNGT	8 cut(s)	122, 151, 226, 274, 821, 1424, 1520, 1721
HpyCH4IV	ACGT	4 cut(s)	546, 714, 749, 1480
HpyCH4V	TGCA	5 cut(s)	300, 415, 697, 845, 1673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 431, 1146, 1709
HpyF3I	CTNAG	4 cut(s)	285, 365, 1387, 1442
HpySE526I	ACGT	4 cut(s)	546, 714, 749, 1480
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	7 cut(s)	442, 998, 1057, 1280, 1450, 1598, 1792
HspAI	GCGC	4 cut(s)	383, 450, 533, 1384
Kpn2I	TCCGGA	1 cut(s)	191
KroI	GCCGGC	1 cut(s)	668
KroNI	GCCGGC	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	1648
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
LguI	GCTCTTC	1 cut(s)	1596
LmnI	GCTCC	6 cut(s)	380, 397, 422, 480, 1058, 1180
Lsp1109I	GCAGC	2 cut(s)	427, 522
LweI	GCATC	2 cut(s)	199, 999
MaeI	CTAG	3 cut(s)	291, 1100, 1733
MaeII	ACGT	4 cut(s)	546, 714, 749, 1480
MaeIII	GTNAC	3 cut(s)	172, 1027, 1261
MalI	GATC	5 cut(s)	370, 599, 1555, 1620, 1650
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
MboII	GAAGA	8 cut(s)	225, 421, 1046, 1121, 1329, 1576, 1583, 1688
MfeI	CAATTG	2 cut(s)	454, 1257
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	652, 1363
MluCI	AATT	9 cut(s)	195, 454, 608, 824, 1229, 1257, 1393, 1407, 1747
MlyI	GAGTC	2 cut(s)	161, 239
MmeI	TCCRAC	2 cut(s)	245, 293
MroI	TCCGGA	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	668
MroXI	GAANNNNTTC	1 cut(s)	1221
MslI	CAYNNNNRTG	2 cut(s)	903, 1685
MspR9I	CCNGG	9 cut(s)	104, 338, 464, 566, 656, 1243, 1244, 1496, 1694
MunI	CAATTG	2 cut(s)	454, 1257
Mva1269I	GAATGC	1 cut(s)	1639
MvaI	CCWGG	3 cut(s)	338, 1496, 1694
MvnI	CGCG	3 cut(s)	450, 496, 1140
MwoI	GCNNNNNNNGC	4 cut(s)	380, 431, 1146, 1709
NaeI	GCCGGC	1 cut(s)	670
NciI	CCSGG	6 cut(s)	104, 464, 566, 656, 1243, 1244
NdeII	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
NgoMIV	GCCGGC	1 cut(s)	668
NlaIII	CATG	7 cut(s)	442, 998, 1057, 1280, 1450, 1598, 1792
NlaIV	GGNNCC	5 cut(s)	399, 1360, 1361, 1433, 1608
NmeAIII	GCCGAG	2 cut(s)	282, 306
NmuCI	GTSAC	2 cut(s)	172, 1261
NruI	TCGCGA	1 cut(s)	1140
NspV	TTCGAA	1 cut(s)	1524
OliI	CACNNNNGTG	1 cut(s)	903
PagI	TCATGA	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	1783
PciSI	GCTCTTC	1 cut(s)	1596
PcsI	WCGNNNNNNNCGW	1 cut(s)	934
PctI	GAATGC	1 cut(s)	1639
PdiI	GCCGGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	1221
PfeI	GAWTC	5 cut(s)	265, 445, 767, 980, 1292
PflFI	GACNNNGTC	2 cut(s)	170, 1078
PfoI	TCCNGGA	2 cut(s)	462, 654
PkrI	GCNGC	8 cut(s)	160, 417, 436, 519, 537, 540, 606, 674
Ple19I	CGATCG	1 cut(s)	600
PleI	GAGTC	2 cut(s)	161, 239
PpsI	GAGTC	2 cut(s)	161, 239
Psp6I	CCWGG	3 cut(s)	336, 1494, 1692
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	3 cut(s)	336, 1494, 1692
PspN4I	GGNNCC	5 cut(s)	399, 1360, 1361, 1433, 1608
PspOMI	GGGCCC	1 cut(s)	1359
PspPI	GGNCC	9 cut(s)	305, 334, 526, 602, 1240, 1359, 1360, 1607, 1690
PstNI	CAGNNNCTG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	368
PsyI	GACNNNGTC	2 cut(s)	170, 1078
PvuI	CGATCG	1 cut(s)	600
RruI	TCGCGA	1 cut(s)	1140
RsaI	GTAC	3 cut(s)	351, 512, 1095
RsaNI	GTAC	3 cut(s)	350, 511, 1094
RseI	CAYNNNNRTG	2 cut(s)	903, 1685
SapI	GCTCTTC	1 cut(s)	1596
SatI	GCNGC	8 cut(s)	159, 416, 435, 518, 536, 539, 605, 673
Sau3AI	GATC	5 cut(s)	368, 597, 1553, 1618, 1648
Sau96I	GGNCC	9 cut(s)	305, 334, 526, 602, 1240, 1359, 1360, 1607, 1690
ScaI	AGTACT	1 cut(s)	1095
SchI	GAGTC	2 cut(s)	161, 239
ScrFI	CCNGG	9 cut(s)	104, 338, 464, 566, 656, 1243, 1244, 1496, 1694
SduI	GDGCHC	2 cut(s)	652, 1363
SfaNI	GCATC	2 cut(s)	199, 999
SfuI	TTCGAA	1 cut(s)	1524
SinI	GGWCC	3 cut(s)	334, 526, 1607
SmaI	CCCGGG	1 cut(s)	1244
SmiMI	CAYNNNNRTG	2 cut(s)	903, 1685
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
Sse9I	AATT	9 cut(s)	195, 454, 608, 824, 1229, 1257, 1393, 1407, 1747
SseBI	AGGCCT	1 cut(s)	1783
SspMI	CTAG	3 cut(s)	291, 1100, 1733
StuI	AGGCCT	1 cut(s)	1783
StyD4I	CCNGG	9 cut(s)	102, 336, 462, 564, 654, 1241, 1242, 1494, 1692
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	8 cut(s)	122, 151, 226, 274, 821, 1424, 1520, 1721
TaiI	ACGT	4 cut(s)	549, 717, 752, 1483
TaqI	TCGA	6 cut(s)	165, 354, 596, 731, 1524, 1621
TaqII	GACCGA	1 cut(s)	1546
TasI	AATT	9 cut(s)	195, 454, 608, 824, 1229, 1257, 1393, 1407, 1747
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	6 cut(s)	161, 437, 520, 541, 607, 675
TfiI	GAWTC	5 cut(s)	265, 445, 767, 980, 1292
TscAI	CASTG	4 cut(s)	1209, 1446, 1537, 1726
TseFI	GTSAC	2 cut(s)	172, 1261
TseI	GCWGC	2 cut(s)	415, 535
Tsp45I	GTSAC	2 cut(s)	172, 1261
TspGWI	ACGGA	4 cut(s)	160, 518, 752, 1424
TspMI	CCCGGG	1 cut(s)	1242
TspRI	CASTG	4 cut(s)	1209, 1446, 1537, 1726
Tth111I	GACNNNGTC	2 cut(s)	170, 1078
VpaK11BI	GGWCC	3 cut(s)	334, 526, 1607
XapI	RAATTY	3 cut(s)	195, 1393, 1407
XbaI	TCTAGA	2 cut(s)	1099, 1732
XmaI	CCCGGG	1 cut(s)	1242
XmiI	GTMKAC	1 cut(s)	1512
XmnI	GAANNNNTTC	1 cut(s)	1221
XspI	CTAG	3 cut(s)	291, 1100, 1733
ZraI	GACGTC	1 cut(s)	750
ZrmI	AGTACT	1 cut(s)	1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.