Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

1081296 .. 1084926

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1013700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCAAACAAAAATAGAGCCAAACAGATCGAAAAGTCATCCCCGATACCAGACATCCCCAAAGTCCTTACGCTCCAAAACCAAACAGAATCCCAATCCAATCACTCGCGCACTGAAAAACCCCTATCGCCCATCTCTCTCTCTCTCTCTCTGTTCTCCGCCGAAGTCGAAGAACCCAAGGCAAACCAAGAATGTGGAAAAATCTGCTTCTCCGCCGAAATCGAAGAATCCGAGGCAAACCAATGAGGCGAGAGTTGAAGAGGAGGTAGCAACGAGTGTAGAAAAAGCTGCTTCTCTGCCGAGGAAGCCAGTGACTCAGGAGGTAGCTGCGGCTGATGAAGACGGAGAGGAATCGAGGTTTAGTGGCAAACCGATGGAAGATGAGGAGACTCGTAAGCAATATCCCAAGAGATATGTGGGAGAGAATTATGCATTGCTAGCAATCAGTTGTGAGTGTTCTATGTATTTCACTGGGTCACGAAAAGAAAGGAAGAAATGTTATGAAAGGACAATTACAAAGAGTATCGCCCTTTGTTTTGACTTTGATCCTTGCATTGGTGCAGAAGGCAAAGAGGAATGGGCAAAAAAACTCCAACGAGGAGAGACAAAAGAACCCTACATTTGTAAGATTGTGGAAATGTTTGAGGCAATTGGTGGGCTATTATATTTTACTGCACAATGGTACTATAGATCACAAGACACTGTCATAAAGCACTGTGCTAGTGTTGCTTGTGGGCATGTTGATCAAGATGTGAAGAGTAAATCAATTCCAGTGTGCAATTACTATTGCGACACCAAGTATTTGCTACCGTATTCTACTTTTGTCAATCTGCAAACAGGATATTGTTCTCTTTCTACTTACTGTCATGATGCTGAAATTATGCAGTCTGGAAGTGATGACTCAACTATCTCTGTTTCGGATGATGTTTGTTTGGATAGTGAGGTTGATTCAAAGCTGTCAAATGGAGTGTGTGCCAAATCACAAGTAAGGCTCCTGGACCTATATTCTGGTTGTGGAGTGATGTCTACTGGCCTGTGCCTTGCTGCCCATTTGGCCAATGTCAATCTTGTAACGTTGAGAGAAACTGTTTCAATTGATTGCAATGCAATGCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

373

Amino Acids

41.58

Weight (kDa)

8.31

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1025
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	158, 212, 329
AclI	AACGTT	1 cut(s)	1073
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	1053
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	257, 951, 1092
AjnI	CCWGG	1 cut(s)	993
AluBI	AGCT	3 cut(s)	287, 326, 955
AluI	AGCT	3 cut(s)	287, 326, 955
Alw26I	GTCTC	2 cut(s)	380, 596
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	1030, 1053
ApeKI	GCWGC	3 cut(s)	287, 326, 1043
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	997
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	997
BalI	TGGCCA	1 cut(s)	1055
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	274, 313, 1030
BccI	CCATC	2 cut(s)	139, 367
BciT130I	CCWGG	1 cut(s)	995
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	380, 596
BfaI	CTAG	2 cut(s)	437, 720
BfmI	CTRYAG	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	1052
BisI	GCNGC	4 cut(s)	288, 327, 330, 1044
BlsI	GCNGC	4 cut(s)	289, 328, 331, 1045
Bme1390I	CCNGG	1 cut(s)	995
Bme18I	GGWCC	1 cut(s)	997
BmgT120I	GGNCC	1 cut(s)	997
BmiI	GGNNCC	1 cut(s)	992
BmrFI	CCNGG	1 cut(s)	995
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	859
BmtI	GCTAGC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	176, 230, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	4 cut(s)	308, 475, 770, 1033
Bse3DI	GCAATG	3 cut(s)	431, 1108, 1113
BseBI	CCWGG	1 cut(s)	995
BseDI	CCNNGG	3 cut(s)	176, 230, 299
BseGI	GGATG	3 cut(s)	37, 53, 925
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	3 cut(s)	431, 1108, 1113
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	4 cut(s)	308, 475, 770, 1033
BseRI	GAGGAG	3 cut(s)	275, 398, 612
BseXI	GCAGC	3 cut(s)	274, 313, 1030
BsgI	GTGCAG	2 cut(s)	579, 657
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	1032, 1055
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	2 cut(s)	380, 596
BsnI	GGCC	2 cut(s)	1032, 1055
Bsp143I	GATC	4 cut(s)	26, 544, 689, 742
BspACI	CCGC	3 cut(s)	158, 212, 329
BspANI	GGCC	2 cut(s)	1032, 1055
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	992
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	539
BsrDI	GCAATG	3 cut(s)	431, 1108, 1113
BsrI	ACTGG	4 cut(s)	308, 475, 770, 1033
BssECI	CCNNGG	3 cut(s)	176, 230, 299
BssMI	GATC	4 cut(s)	26, 544, 689, 742
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	995
Bst4CI	ACNGT	5 cut(s)	703, 716, 810, 863, 1087
Bst6I	CTCTTC	2 cut(s)	252, 749
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	37, 53, 925
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	29, 547, 692, 745
BstMAI	GTCTC	2 cut(s)	380, 596
BstMBI	GATC	4 cut(s)	26, 544, 689, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 437, 725, 1052
BstNI	CCWGG	1 cut(s)	995
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	993
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	274, 313, 1030
BstV2I	GAAGAC	1 cut(s)	345
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	1032, 1055
BtsCI	GGATG	3 cut(s)	37, 53, 925
BtsIMutI	CAGTG	6 cut(s)	110, 315, 468, 699, 712, 777
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	997
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	2 cut(s)	737, 866
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	4 cut(s)	28, 546, 691, 744
DpnII	GATC	4 cut(s)	26, 544, 689, 742
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	2 cut(s)	252, 749
EarI	CTCTTC	2 cut(s)	252, 749
EciI	GGCGGA	2 cut(s)	147, 201
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	997
EcoRII	CCWGG	1 cut(s)	993
EcoT14I	CCWWGG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	740, 869
FatI	CATG	2 cut(s)	736, 865
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	1025
Fnu4HI	GCNGC	4 cut(s)	288, 327, 330, 1044
FokI	GGATG	3 cut(s)	24, 40, 932
Fsp4HI	GCNGC	4 cut(s)	288, 327, 330, 1044
FspBI	CTAG	2 cut(s)	437, 720
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	288, 327, 330, 1044
HaeIII	GGCC	2 cut(s)	1032, 1055
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	740, 869
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	7 cut(s)	88, 226, 313, 350, 388, 899, 947
Hpy166II	GTNNAC	1 cut(s)	1026
Hpy188I	TCNGA	2 cut(s)	231, 919
Hpy188III	TCNNGA	5 cut(s)	317, 477, 746, 866, 888
Hpy8I	GTNNAC	1 cut(s)	1026
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	5 cut(s)	703, 716, 810, 863, 1087
HpyCH4IV	ACGT	1 cut(s)	1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 437, 725, 1052
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	1073
Hsp92II	CATG	2 cut(s)	740, 869
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	26, 544, 689, 742
LmnI	GCTCC	2 cut(s)	77, 996
Lsp1109I	GCAGC	3 cut(s)	274, 313, 1030
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	2 cut(s)	437, 720
MaeII	ACGT	1 cut(s)	1073
MaeIII	GTNAC	3 cut(s)	310, 474, 1069
MalI	GATC	4 cut(s)	28, 546, 691, 744
MboI	GATC	4 cut(s)	26, 544, 689, 742
MboII	GAAGA	7 cut(s)	181, 235, 269, 350, 389, 502, 766
MfeI	CAATTG	2 cut(s)	648, 1092
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	7 cut(s)	424, 510, 648, 765, 778, 876, 1092
MluNI	TGGCCA	1 cut(s)	1055
MlyI	GAGTC	3 cut(s)	307, 382, 893
MmeI	TCCRAC	1 cut(s)	616
Mox20I	TGGCCA	1 cut(s)	1055
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	1055
Msp20I	TGGCCA	1 cut(s)	1055
MspR9I	CCNGG	1 cut(s)	995
MunI	CAATTG	2 cut(s)	648, 1092
MvaI	CCWGG	1 cut(s)	995
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	304, 437, 725, 1052
NdeII	GATC	4 cut(s)	26, 544, 689, 742
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	740, 869
NlaIV	GGNNCC	1 cut(s)	992
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	310, 474
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	740
PagI	TCATGA	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	88, 226, 350, 947
PflFI	GACNNNGTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	993
PkrI	GCNGC	4 cut(s)	289, 328, 331, 1045
PleI	GAGTC	3 cut(s)	307, 382, 893
PpsI	GAGTC	3 cut(s)	307, 382, 893
Psp1406I	AACGTT	1 cut(s)	1073
Psp6I	CCWGG	1 cut(s)	993
PspGI	CCWGG	1 cut(s)	993
PspN4I	GGNNCC	1 cut(s)	992
PspPI	GGNCC	1 cut(s)	997
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SatI	GCNGC	4 cut(s)	288, 327, 330, 1044
Sau3AI	GATC	4 cut(s)	26, 544, 689, 742
Sau96I	GGNCC	1 cut(s)	997
SchI	GAGTC	3 cut(s)	307, 382, 893
ScrFI	CCNGG	1 cut(s)	995
SetI	ASST	9 cut(s)	267, 289, 324, 328, 359, 945, 957, 1002, 1076
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	1 cut(s)	685
SinI	GGWCC	1 cut(s)	997
Sse9I	AATT	7 cut(s)	424, 510, 648, 765, 778, 876, 1092
SsiI	CCGC	3 cut(s)	158, 212, 329
SspMI	CTAG	2 cut(s)	437, 720
StyD4I	CCNGG	1 cut(s)	993
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	5 cut(s)	703, 716, 810, 863, 1087
TaiI	ACGT	1 cut(s)	1076
TaqI	TCGA	4 cut(s)	29, 167, 221, 353
TasI	AATT	7 cut(s)	424, 510, 648, 765, 778, 876, 1092
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	88, 226, 350, 947
TscAI	CASTG	6 cut(s)	117, 315, 475, 706, 719, 777
TseFI	GTSAC	2 cut(s)	310, 474
TseI	GCWGC	3 cut(s)	287, 326, 1043
Tsp45I	GTSAC	2 cut(s)	310, 474
TspDTI	ATGAA	2 cut(s)	351, 516
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	6 cut(s)	117, 315, 475, 706, 719, 777
Tth111I	GACNNNGTC	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	997
XceI	RCATGY	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	1025
XspI	CTAG	2 cut(s)	437, 720
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.