DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69770 |
| fragaria_vesca | FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560 |
| malus_domestica | MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1 |
| prunus_persica | Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1 |
| pyrus_communis | pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900 |
| rosa_chinensis | RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071 |
| rosa_laevigata | RLG00000005861 RLG00000009362 RLG00000015713 |
| rosa_multiflora | Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620 |
| rosa_rugosa | Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400 |
| rosa_samantha | Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500 |
| rosa_wichuraiana | Rw2G001030 Rw4G007200 Rw4G035230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2261 |
| AarI | CACCTGC | 1 cut(s) | 1961 |
| Acc36I | ACCTGC | 2 cut(s) | 1961, 2713 |
| Acc65I | GGTACC | 1 cut(s) | 1836 |
| AccB1I | GGYRCC | 1 cut(s) | 1836 |
| AccI | GTMKAC | 2 cut(s) | 1175, 1405 |
| AccII | CGCG | 3 cut(s) | 219, 2023, 2755 |
| AccIII | TCCGGA | 1 cut(s) | 2677 |
| AciI | CCGC | 9 cut(s) | 75, 165, 290, 328, 446, 479, 1164, 2332, 2697 |
| AclI | AACGTT | 1 cut(s) | 2316 |
| AclWI | GGATC | 4 cut(s) | 2447, 2460, 2491, 2801 |
| AcoI | YGGCCR | 2 cut(s) | 272, 1203 |
| AcsI | RAATTY | 8 cut(s) | 40, 130, 151, 1412, 1661, 1850, 1886, 2830 |
| AcuI | CTGAAG | 5 cut(s) | 336, 1329, 1518, 1692, 2386 |
| AcvI | CACGTG | 1 cut(s) | 2366 |
| AcyI | GRCGYC | 1 cut(s) | 1924 |
| AfaI | GTAC | 8 cut(s) | 309, 788, 1137, 1250, 1820, 1838, 2048, 2717 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 312, 1703, 1742, 2556 |
| AflIII | ACRYGT | 1 cut(s) | 2365 |
| AjnI | CCWGG | 3 cut(s) | 1613, 2413, 2465 |
| AluBI | AGCT | 7 cut(s) | 440, 476, 629, 1105, 1304, 2594, 2692 |
| AluI | AGCT | 7 cut(s) | 440, 476, 629, 1105, 1304, 2594, 2692 |
| Alw21I | GWGCWC | 2 cut(s) | 1198, 2761 |
| Alw26I | GTCTC | 3 cut(s) | 795, 858, 1277 |
| Alw44I | GTGCAC | 2 cut(s) | 1194, 2757 |
| AlwI | GGATC | 4 cut(s) | 2447, 2460, 2491, 2801 |
| Ama87I | CYCGRG | 1 cut(s) | 2624 |
| Aor13HI | TCCGGA | 1 cut(s) | 2677 |
| AoxI | GGCC | 5 cut(s) | 272, 1180, 1203, 1598, 2699 |
| ApaLI | GTGCAC | 2 cut(s) | 1194, 2757 |
| ApeKI | GCWGC | 5 cut(s) | 437, 476, 1105, 1304, 1967 |
| ApoI | RAATTY | 8 cut(s) | 40, 130, 151, 1412, 1661, 1850, 1886, 2830 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 349, 897, 1314 |
| Asp718I | GGTACC | 1 cut(s) | 1836 |
| AspLEI | GCGC | 4 cut(s) | 221, 305, 2023, 2755 |
| AspS9I | GGNCC | 3 cut(s) | 1598, 1730, 2699 |
| AsuC2I | CCSGG | 2 cut(s) | 365, 1704 |
| AsuHPI | GGTGA | 6 cut(s) | 49, 114, 1550, 1718, 2321, 2444 |
| AsuII | TTCGAA | 2 cut(s) | 938, 1294 |
| AvaI | CYCGRG | 1 cut(s) | 2624 |
| AvaII | GGWCC | 1 cut(s) | 1730 |
| AxyI | CCTNAGG | 1 cut(s) | 1602 |
| BaeGI | GKGCMC | 2 cut(s) | 1198, 2761 |
| BalI | TGGCCA | 1 cut(s) | 1205 |
| BamHI | GGATCC | 1 cut(s) | 2452 |
| BanI | GGYRCC | 1 cut(s) | 1836 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1553, 1585 |
| BauI | CACGAG | 1 cut(s) | 798 |
| BbrPI | CACGTG | 1 cut(s) | 2366 |
| BbsI | GAAGAC | 5 cut(s) | 257, 534, 878, 1614, 2523 |
| Bbv12I | GWGCWC | 2 cut(s) | 1198, 2761 |
| BbvI | GCAGC | 5 cut(s) | 449, 463, 1092, 1291, 1979 |
| BceAI | ACGGC | 2 cut(s) | 290, 1154 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2168, 2202, 2342, 2376 |
| BciT130I | CCWGG | 3 cut(s) | 1615, 2415, 2467 |
| BclI | TGATCA | 1 cut(s) | 2326 |
| BcnI | CCSGG | 2 cut(s) | 365, 1704 |
| BcoDI | GTCTC | 3 cut(s) | 795, 858, 1277 |
| BfaI | CTAG | 1 cut(s) | 2838 |
| BfmI | CTRYAG | 1 cut(s) | 790 |
| BfuAI | ACCTGC | 2 cut(s) | 1961, 2713 |
| BglII | AGATCT | 3 cut(s) | 1147, 2034, 2407 |
| BisI | GCNGC | 6 cut(s) | 438, 477, 480, 1106, 1305, 1968 |
| BlpI | GCTNAGC | 1 cut(s) | 2693 |
| BlsI | GCNGC | 6 cut(s) | 439, 478, 481, 1107, 1306, 1969 |
| Bme1390I | CCNGG | 5 cut(s) | 365, 1615, 1704, 2415, 2467 |
| Bme18I | GGWCC | 1 cut(s) | 1730 |
| BmeT110I | CYCGRG | 1 cut(s) | 2624 |
| BmgT120I | GGNCC | 3 cut(s) | 1598, 1730, 2699 |
| BmiI | GGNNCC | 7 cut(s) | 346, 455, 1620, 1731, 1732, 1838, 2454 |
| BmrFI | CCNGG | 5 cut(s) | 365, 1615, 1704, 2415, 2467 |
| BmrI | ACTGGG | 3 cut(s) | 452, 2038, 2771 |
| BmsI | GCATC | 6 cut(s) | 676, 2158, 2208, 2243, 2629, 2873 |
| BmuI | ACTGGG | 3 cut(s) | 452, 2038, 2771 |
| BpiI | GAAGAC | 5 cut(s) | 257, 534, 878, 1614, 2523 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2693 |
| Bpu14I | TTCGAA | 2 cut(s) | 938, 1294 |
| BpuEI | CTTGAG | 1 cut(s) | 1313 |
| BpuMI | CCSGG | 2 cut(s) | 365, 1704 |
| BsaAI | YACGTR | 1 cut(s) | 2366 |
| BsaHI | GRCGYC | 1 cut(s) | 1924 |
| BsaWI | WCCGGW | 1 cut(s) | 2677 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 312, 1703, 1742, 2556 |
| Bse1I | ACTGG | 6 cut(s) | 458, 956, 1042, 1183, 2044, 2766 |
| Bse21I | CCTNAGG | 1 cut(s) | 1602 |
| Bse3DI | GCAATG | 1 cut(s) | 1176 |
| BseAI | TCCGGA | 1 cut(s) | 2677 |
| BseBI | CCWGG | 3 cut(s) | 1615, 2415, 2467 |
| BseGI | GGATG | 9 cut(s) | 321, 1075, 1276, 1396, 1959, 2170, 2234, 2569, 2620 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 312, 1703, 1742, 2556 |
| BseMI | GCAATG | 1 cut(s) | 1176 |
| BseMII | CTCAG | 4 cut(s) | 479, 1593, 2022, 2707 |
| BseNI | ACTGG | 6 cut(s) | 458, 956, 1042, 1183, 2044, 2766 |
| BseRI | GAGGAG | 3 cut(s) | 425, 548, 1400 |
| BseSI | GKGCMC | 2 cut(s) | 1198, 2761 |
| BseXI | GCAGC | 5 cut(s) | 449, 463, 1092, 1291, 1979 |
| BsgI | GTGCAG | 1 cut(s) | 762 |
| Bsh1236I | CGCG | 3 cut(s) | 219, 2023, 2755 |
| BshFI | GGCC | 5 cut(s) | 274, 1182, 1205, 1600, 2701 |
| BshNI | GGYRCC | 1 cut(s) | 1836 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1198, 2761 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2624 |
| BsiSI | CCGG | 4 cut(s) | 271, 365, 1703, 2678 |
| BsiWI | CGTACG | 1 cut(s) | 307 |
| BslFI | GGGAC | 4 cut(s) | 82, 1743, 1935, 2302 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 312, 1703, 1742, 2556 |
| BsmAI | GTCTC | 3 cut(s) | 795, 858, 1277 |
| BsmBI | CGTCTC | 1 cut(s) | 858 |
| BsmFI | GGGAC | 4 cut(s) | 82, 1743, 1935, 2302 |
| BsmI | GAATGC | 2 cut(s) | 2353, 2662 |
| BsnI | GGCC | 5 cut(s) | 274, 1182, 1205, 1600, 2701 |
| BsoBI | CYCGRG | 1 cut(s) | 2624 |
| Bsp119I | TTCGAA | 2 cut(s) | 938, 1294 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1198, 2761 |
| Bsp13I | TCCGGA | 1 cut(s) | 2677 |
| Bsp1407I | TGTACA | 1 cut(s) | 1818 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2693 |
| BspACI | CCGC | 9 cut(s) | 75, 165, 290, 328, 446, 479, 1164, 2332, 2697 |
| BspANI | GGCC | 5 cut(s) | 274, 1182, 1205, 1600, 2701 |
| BspCNI | CTCAG | 4 cut(s) | 478, 1594, 2023, 2706 |
| BspEI | TCCGGA | 1 cut(s) | 2677 |
| BspFNI | CGCG | 3 cut(s) | 219, 2023, 2755 |
| BspLI | GGNNCC | 7 cut(s) | 346, 455, 1620, 1731, 1732, 1838, 2454 |
| BspMI | ACCTGC | 2 cut(s) | 1961, 2713 |
| BspPI | GGATC | 4 cut(s) | 2447, 2460, 2491, 2801 |
| BspQI | GCTCTTC | 1 cut(s) | 708 |
| BspT104I | TTCGAA | 2 cut(s) | 938, 1294 |
| BspT107I | GGYRCC | 1 cut(s) | 1836 |
| BsrDI | GCAATG | 1 cut(s) | 1176 |
| BsrGI | TGTACA | 1 cut(s) | 1818 |
| BsrI | ACTGG | 6 cut(s) | 458, 956, 1042, 1183, 2044, 2766 |
| BssNAI | GTATAC | 1 cut(s) | 1406 |
| BssNI | GRCGYC | 1 cut(s) | 1924 |
| BssSI | CACGAG | 1 cut(s) | 798 |
| BssT1I | CCWWGG | 5 cut(s) | 390, 1189, 1741, 1903, 1917 |
| Bst1107I | GTATAC | 1 cut(s) | 1406 |
| Bst2BI | CACGAG | 1 cut(s) | 798 |
| Bst2UI | CCWGG | 3 cut(s) | 1615, 2415, 2467 |
| Bst6I | CTCTTC | 7 cut(s) | 355, 402, 708, 935, 1431, 1455, 2868 |
| BstACI | GRCGYC | 1 cut(s) | 1924 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1973 |
| BstAUI | TGTACA | 1 cut(s) | 1818 |
| BstBAI | YACGTR | 1 cut(s) | 2366 |
| BstBI | TTCGAA | 2 cut(s) | 938, 1294 |
| BstC8I | GCNNGC | 8 cut(s) | 1020, 1122, 1650, 2187, 2398, 2699, 2757, 2826 |
| BstDEI | CTNAG | 7 cut(s) | 252, 465, 1144, 1602, 2031, 2267, 2693 |
| BstEII | GGTNACC | 1 cut(s) | 1538 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1740 |
| BstF5I | GGATG | 9 cut(s) | 321, 1075, 1276, 1396, 1959, 2170, 2234, 2569, 2620 |
| BstFNI | CGCG | 3 cut(s) | 219, 2023, 2755 |
| BstHHI | GCGC | 4 cut(s) | 221, 305, 2023, 2755 |
| BstMAI | GTCTC | 3 cut(s) | 795, 858, 1277 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 309, 830, 1202, 1645, 1973, 2626, 2698 |
| BstNI | CCWGG | 3 cut(s) | 1615, 2415, 2467 |
| BstNSI | RCATGY | 4 cut(s) | 1124, 1354, 2400, 2722 |
| BstPI | GGTNACC | 1 cut(s) | 1538 |
| BstSCI | CCNGG | 5 cut(s) | 363, 1613, 1702, 2413, 2465 |
| BstSFI | CTRYAG | 1 cut(s) | 790 |
| BstSLI | GKGCMC | 2 cut(s) | 1198, 2761 |
| BstUI | CGCG | 3 cut(s) | 219, 2023, 2755 |
| BstV1I | GCAGC | 5 cut(s) | 449, 463, 1092, 1291, 1979 |
| BstV2I | GAAGAC | 5 cut(s) | 257, 534, 878, 1614, 2523 |
| BstX2I | RGATCY | 4 cut(s) | 1147, 2034, 2407, 2452 |
| BstYI | RGATCY | 4 cut(s) | 1147, 2034, 2407, 2452 |
| BstZ17I | GTATAC | 1 cut(s) | 1406 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1602 |
| BsuRI | GGCC | 5 cut(s) | 274, 1182, 1205, 1600, 2701 |
| BtsCI | GGATG | 9 cut(s) | 321, 1075, 1276, 1396, 1959, 2170, 2234, 2569, 2620 |
| BtsIMutI | CAGTG | 6 cut(s) | 465, 804, 817, 963, 2586, 2759 |
| BveI | ACCTGC | 2 cut(s) | 1961, 2713 |
| Cac8I | GCNNGC | 8 cut(s) | 1020, 1122, 1650, 2187, 2398, 2699, 2757, 2826 |
| CfoI | GCGC | 4 cut(s) | 221, 305, 2023, 2755 |
| Cfr13I | GGNCC | 3 cut(s) | 1598, 1730, 2699 |
| CseI | GACGC | 2 cut(s) | 1932, 2012 |
| Csp6I | GTAC | 8 cut(s) | 308, 787, 1136, 1249, 1819, 1837, 2047, 2716 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 408, 443 |
| CviAII | CATG | 8 cut(s) | 692, 1121, 1335, 1351, 1822, 2063, 2397, 2719 |
| CviQI | GTAC | 8 cut(s) | 308, 787, 1136, 1249, 1819, 1837, 2047, 2716 |
| DdeI | CTNAG | 7 cut(s) | 252, 465, 1144, 1602, 2031, 2267, 2693 |
| DraI | TTTAAA | 2 cut(s) | 1359, 1884 |
| EaeI | YGGCCR | 2 cut(s) | 272, 1203 |
| Eam1104I | CTCTTC | 7 cut(s) | 355, 402, 708, 935, 1431, 1455, 2868 |
| EarI | CTCTTC | 7 cut(s) | 355, 402, 708, 935, 1431, 1455, 2868 |
| EciI | GGCGGA | 1 cut(s) | 435 |
| Eco130I | CCWWGG | 5 cut(s) | 390, 1189, 1741, 1903, 1917 |
| Eco47I | GGWCC | 1 cut(s) | 1730 |
| Eco57I | CTGAAG | 5 cut(s) | 336, 1329, 1518, 1692, 2386 |
| Eco72I | CACGTG | 1 cut(s) | 2366 |
| Eco81I | CCTNAGG | 1 cut(s) | 1602 |
| Eco88I | CYCGRG | 1 cut(s) | 2624 |
| Eco91I | GGTNACC | 1 cut(s) | 1538 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1740 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1730 |
| EcoO65I | GGTNACC | 1 cut(s) | 1538 |
| EcoRI | GAATTC | 1 cut(s) | 1412 |
| EcoRII | CCWGG | 3 cut(s) | 1613, 2413, 2465 |
| EcoT14I | CCWWGG | 5 cut(s) | 390, 1189, 1741, 1903, 1917 |
| EcoT22I | ATGCAT | 3 cut(s) | 1352, 2622, 2773 |
| ErhI | CCWWGG | 5 cut(s) | 390, 1189, 1741, 1903, 1917 |
| Esp3I | CGTCTC | 1 cut(s) | 858 |
| FaeI | CATG | 8 cut(s) | 695, 1124, 1338, 1354, 1825, 2066, 2400, 2722 |
| FaqI | GGGAC | 4 cut(s) | 82, 1743, 1935, 2302 |
| FatI | CATG | 8 cut(s) | 691, 1120, 1334, 1350, 1821, 2062, 2396, 2718 |
| FauI | CCCGC | 3 cut(s) | 82, 172, 2690 |
| FauNDI | CATATG | 1 cut(s) | 1978 |
| FbaI | TGATCA | 1 cut(s) | 2326 |
| FblI | GTMKAC | 2 cut(s) | 1175, 1405 |
| Fnu4HI | GCNGC | 6 cut(s) | 438, 477, 480, 1106, 1305, 1968 |
| FokI | GGATG | 9 cut(s) | 328, 1082, 1263, 1403, 1966, 2177, 2221, 2576, 2607 |
| Fsp4HI | GCNGC | 6 cut(s) | 438, 477, 480, 1106, 1305, 1968 |
| FspBI | CTAG | 1 cut(s) | 2838 |
| GlaI | GCGC | 4 cut(s) | 220, 304, 2022, 2754 |
| GluI | GCNGC | 6 cut(s) | 438, 477, 480, 1106, 1305, 1968 |
| HaeIII | GGCC | 5 cut(s) | 274, 1182, 1205, 1600, 2701 |
| HapII | CCGG | 4 cut(s) | 271, 365, 1703, 2678 |
| HgaI | GACGC | 2 cut(s) | 1932, 2012 |
| HhaI | GCGC | 4 cut(s) | 221, 305, 2023, 2755 |
| Hin1I | GRCGYC | 1 cut(s) | 1924 |
| Hin1II | CATG | 8 cut(s) | 695, 1124, 1338, 1354, 1825, 2066, 2400, 2722 |
| Hin6I | GCGC | 4 cut(s) | 219, 303, 2021, 2753 |
| HinP1I | GCGC | 4 cut(s) | 219, 303, 2021, 2753 |
| HincII | GTYRAC | 1 cut(s) | 1237 |
| HindII | GTYRAC | 1 cut(s) | 1237 |
| HinfI | GANTC | 9 cut(s) | 368, 463, 663, 935, 1049, 1097, 1493, 1579, 1899 |
| HpaII | CCGG | 4 cut(s) | 271, 365, 1703, 2678 |
| HphI | GGTGA | 6 cut(s) | 49, 114, 1550, 1718, 2321, 2444 |
| Hpy166II | GTNNAC | 7 cut(s) | 236, 1176, 1196, 1237, 1406, 1819, 2759 |
| Hpy8I | GTNNAC | 7 cut(s) | 236, 1176, 1196, 1237, 1406, 1819, 2759 |
| HpyAV | CCTTC | 7 cut(s) | 325, 331, 1555, 1582, 1667, 2120, 2852 |
| HpyCH4IV | ACGT | 4 cut(s) | 119, 2067, 2316, 2365 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 309, 830, 1202, 1645, 1973, 2626, 2698 |
| HpyF3I | CTNAG | 7 cut(s) | 252, 465, 1144, 1602, 2031, 2267, 2693 |
| HpySE526I | ACGT | 4 cut(s) | 119, 2067, 2316, 2365 |
| Hsp92I | GRCGYC | 1 cut(s) | 1924 |
| Hsp92II | CATG | 8 cut(s) | 695, 1124, 1338, 1354, 1825, 2066, 2400, 2722 |
| HspAI | GCGC | 4 cut(s) | 219, 303, 2021, 2753 |
| KflI | GGGWCCC | 1 cut(s) | 1730 |
| Kpn2I | TCCGGA | 1 cut(s) | 2677 |
| KpnI | GGTACC | 1 cut(s) | 1840 |
| Ksp22I | TGATCA | 1 cut(s) | 2326 |
| LguI | GCTCTTC | 1 cut(s) | 708 |
| LmnI | GCTCC | 3 cut(s) | 1166, 1618, 1636 |
| Lsp1109I | GCAGC | 5 cut(s) | 449, 463, 1092, 1291, 1979 |
| LweI | GCATC | 6 cut(s) | 676, 2158, 2208, 2243, 2629, 2873 |
| MaeI | CTAG | 1 cut(s) | 2838 |
| MaeII | ACGT | 4 cut(s) | 119, 2067, 2316, 2365 |
| MaeIII | GTNAC | 9 cut(s) | 120, 460, 635, 974, 1219, 1538, 1676, 2083, 2584 |
| MfeI | CAATTG | 2 cut(s) | 753, 2342 |
| MflI | RGATCY | 4 cut(s) | 1147, 2034, 2407, 2452 |
| MhlI | GDGCHC | 2 cut(s) | 1198, 2761 |
| MlsI | TGGCCA | 1 cut(s) | 1205 |
| MluNI | TGGCCA | 1 cut(s) | 1205 |
| MlyI | GAGTC | 2 cut(s) | 457, 1043 |
| MmeI | TCCRAC | 4 cut(s) | 322, 547, 627, 2707 |
| Mox20I | TGGCCA | 1 cut(s) | 1205 |
| Mph1103I | ATGCAT | 3 cut(s) | 1352, 2622, 2773 |
| MroI | TCCGGA | 1 cut(s) | 2677 |
| MroXI | GAANNNNTTC | 3 cut(s) | 349, 897, 1314 |
| MscI | TGGCCA | 1 cut(s) | 1205 |
| MseI | TTAA | 4 cut(s) | 1358, 1575, 1883, 2787 |
| Msp20I | TGGCCA | 1 cut(s) | 1205 |
| MspA1I | CMGCKG | 1 cut(s) | 2697 |
| MspI | CCGG | 4 cut(s) | 271, 365, 1703, 2678 |
| MspR9I | CCNGG | 5 cut(s) | 365, 1615, 1704, 2415, 2467 |
| MunI | CAATTG | 2 cut(s) | 753, 2342 |
| Mva1269I | GAATGC | 2 cut(s) | 2353, 2662 |
| MvaI | CCWGG | 3 cut(s) | 1615, 2415, 2467 |
| MvnI | CGCG | 3 cut(s) | 219, 2023, 2755 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 309, 830, 1202, 1645, 1973, 2626, 2698 |
| NciI | CCSGG | 2 cut(s) | 365, 1704 |
| NdeI | CATATG | 1 cut(s) | 1978 |
| NlaIII | CATG | 8 cut(s) | 695, 1124, 1338, 1354, 1825, 2066, 2400, 2722 |
| NlaIV | GGNNCC | 7 cut(s) | 346, 455, 1620, 1731, 1732, 1838, 2454 |
| NmeAIII | GCCGAG | 2 cut(s) | 405, 474 |
| NmuCI | GTSAC | 6 cut(s) | 120, 460, 635, 974, 1538, 2584 |
| NsiI | ATGCAT | 3 cut(s) | 1352, 2622, 2773 |
| NspI | RCATGY | 4 cut(s) | 1124, 1354, 2400, 2722 |
| NspV | TTCGAA | 2 cut(s) | 938, 1294 |
| PaeI | GCATGC | 2 cut(s) | 1124, 2400 |
| PaqCI | CACCTGC | 1 cut(s) | 1961 |
| PciSI | GCTCTTC | 1 cut(s) | 708 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 377 |
| PctI | GAATGC | 2 cut(s) | 2353, 2662 |
| PdmI | GAANNNNTTC | 3 cut(s) | 349, 897, 1314 |
| PfeI | GAWTC | 7 cut(s) | 368, 663, 935, 1097, 1493, 1579, 1899 |
| Pfl23II | CGTACG | 1 cut(s) | 307 |
| PflFI | GACNNNGTC | 1 cut(s) | 806 |
| PkrI | GCNGC | 6 cut(s) | 439, 478, 481, 1107, 1306, 1969 |
| PleI | GAGTC | 2 cut(s) | 457, 1043 |
| PmaCI | CACGTG | 1 cut(s) | 2366 |
| PmlI | CACGTG | 1 cut(s) | 2366 |
| PpsI | GAGTC | 2 cut(s) | 457, 1043 |
| Ppu21I | YACGTR | 1 cut(s) | 2366 |
| PpuMI | RGGWCCY | 1 cut(s) | 1730 |
| PsiI | TTATAA | 1 cut(s) | 2261 |
| Psp1406I | AACGTT | 1 cut(s) | 2316 |
| Psp5II | RGGWCCY | 1 cut(s) | 1730 |
| Psp6I | CCWGG | 3 cut(s) | 1613, 2413, 2465 |
| PspCI | CACGTG | 1 cut(s) | 2366 |
| PspEI | GGTNACC | 1 cut(s) | 1538 |
| PspGI | CCWGG | 3 cut(s) | 1613, 2413, 2465 |
| PspLI | CGTACG | 1 cut(s) | 307 |
| PspN4I | GGNNCC | 7 cut(s) | 346, 455, 1620, 1731, 1732, 1838, 2454 |
| PspPI | GGNCC | 3 cut(s) | 1598, 1730, 2699 |
| PspPPI | RGGWCCY | 1 cut(s) | 1730 |
| PsuI | RGATCY | 4 cut(s) | 1147, 2034, 2407, 2452 |
| PsyI | GACNNNGTC | 1 cut(s) | 806 |
| RsaI | GTAC | 8 cut(s) | 309, 788, 1137, 1250, 1820, 1838, 2048, 2717 |
| RsaNI | GTAC | 8 cut(s) | 308, 787, 1136, 1249, 1819, 1837, 2047, 2716 |
| SapI | GCTCTTC | 1 cut(s) | 708 |
| SaqAI | TTAA | 4 cut(s) | 1358, 1575, 1883, 2787 |
| SatI | GCNGC | 6 cut(s) | 438, 477, 480, 1106, 1305, 1968 |
| Sau96I | GGNCC | 3 cut(s) | 1598, 1730, 2699 |
| SchI | GAGTC | 2 cut(s) | 457, 1043 |
| ScrFI | CCNGG | 5 cut(s) | 365, 1615, 1704, 2415, 2467 |
| SduI | GDGCHC | 2 cut(s) | 1198, 2761 |
| SfaNI | GCATC | 6 cut(s) | 676, 2158, 2208, 2243, 2629, 2873 |
| SfcI | CTRYAG | 1 cut(s) | 790 |
| SfuI | TTCGAA | 2 cut(s) | 938, 1294 |
| SinI | GGWCC | 1 cut(s) | 1730 |
| SmlI | CTYRAG | 1 cut(s) | 1328 |
| SmoI | CTYRAG | 1 cut(s) | 1328 |
| SphI | GCATGC | 2 cut(s) | 1124, 2400 |
| SsiI | CCGC | 9 cut(s) | 75, 165, 290, 328, 446, 479, 1164, 2332, 2697 |
| SspMI | CTAG | 1 cut(s) | 2838 |
| StyD4I | CCNGG | 5 cut(s) | 363, 1613, 1702, 2413, 2465 |
| StyI | CCWWGG | 5 cut(s) | 390, 1189, 1741, 1903, 1917 |
| TaiI | ACGT | 4 cut(s) | 122, 2070, 2319, 2368 |
| TaqI | TCGA | 4 cut(s) | 371, 938, 1294, 2537 |
| TatI | WGTACW | 1 cut(s) | 1818 |
| TauI | GCSGC | 1 cut(s) | 482 |
| TfiI | GAWTC | 7 cut(s) | 368, 663, 935, 1097, 1493, 1579, 1899 |
| Tru1I | TTAA | 4 cut(s) | 1358, 1575, 1883, 2787 |
| Tru9I | TTAA | 4 cut(s) | 1358, 1575, 1883, 2787 |
| TscAI | CASTG | 6 cut(s) | 465, 811, 824, 963, 2586, 2766 |
| TseFI | GTSAC | 6 cut(s) | 120, 460, 635, 974, 1538, 2584 |
| TseI | GCWGC | 5 cut(s) | 437, 476, 1105, 1304, 1967 |
| Tsp45I | GTSAC | 6 cut(s) | 120, 460, 635, 974, 1538, 2584 |
| TspGWI | ACGGA | 2 cut(s) | 146, 1985 |
| TspRI | CASTG | 6 cut(s) | 465, 811, 824, 963, 2586, 2766 |
| Tth111I | GACNNNGTC | 1 cut(s) | 806 |
| VneI | GTGCAC | 2 cut(s) | 1194, 2757 |
| VpaK11BI | GGWCC | 1 cut(s) | 1730 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1740 |
| XapI | RAATTY | 8 cut(s) | 40, 130, 151, 1412, 1661, 1850, 1886, 2830 |
| XceI | RCATGY | 4 cut(s) | 1124, 1354, 2400, 2722 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1748, 2473 |
| XmiI | GTMKAC | 2 cut(s) | 1175, 1405 |
| XmnI | GAANNNNTTC | 3 cut(s) | 349, 897, 1314 |
| XspI | CTAG | 1 cut(s) | 2838 |
| Zsp2I | ATGCAT | 3 cut(s) | 1352, 2622, 2773 |