Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

11550243 .. 11558520

Gene Structure 8278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGCCCACCAAGCGGAAGACGAGATCGCTTTCGGCCTCGGCATCGTCTTCTGATTCGAAGAAGGGCGAGCAAACCGATCAGCAGCAGAAGTTAACCAGGAGAGCTGTTGGAGATGGTGACGGCCCGGAGCCCAAGTTCATCGGCCCACAGCTTCAAGACGACGACGCTCGCAAGCGATGGCCCAAGAGCTACGCCGACAAGAAGATGCGGGTATCTGGGCTAAATGGTACAAACAAAGATGAAAATTCTGTCCAAGCTAGGTGTCACTATGCCAAAGCAGAGGTGGATGGGATTGTTTACGATCTATATGATGACGCTCACGTAAAAGCTAGTGAGGGAGAAGAACCCTACATTTGTAAGGTTCTAGAATTTTTCACTGCAATTGATGGATCAATGTATTTTACTGCACAATGGTACTACCGAGCGCGAGATACTGTCATAAAAGATTGTGCTGTCATAGATCCTAAAAGAATTTTTTTTTCAGAGATTCAAGACACAAACCCTTTGGAATGCCTTCTCGGGAAGCTTAATATTGTCAGATTGCCTTTAGATGTCGATTTTGATGGAAAAAGTAAATTGATTCCAGAGTGTGACTACTATTGCGATACAAAATATTTGTTACCTTATTCAAGTTTTGTCAATTTGCCAGCAGAAATTGTGCTGGCCGGAATTGATACCTCTTCCGCAATTTCTAATGGCGTTAATTCTGAACTTCCACAAGGTTGCTCCAGTAGAGAGTCTAGTAAACCAGAAGTCAGATTGCTAGATTTATATTCTGGCTGTGGCGCAATGTCGACTGGCCTATGCCTTGGTGCATGTTCTGCTGGCGTTAATCTTGTTACTAAATGGGCAGTTGATGTGAACAAGCATGCTTGTGAAAGTCTGAAGTTTAACCATCCTGAAACAATGGTTCGGAATGAATCTGCCGAAGATTTTCTTTCATTGCTAAAACAATGGGAACAACTCTGCATCTGTTTTAATTTTGTCGGAACAAATGAATCAGAGAAGCATGGGTTCAATTTCTTCTTTAAAACAGAAGATACTGAAGATGAAGATGAAATAATTGGCACTGATAATGAAGCTTCGGAAGTCTATGAAGTAGCACAAGTACTAGAAATATGTTATGGTGATCCCAACCATATCAAAGAGAGGGGATTGTACTGTAAGATCCGGTGGAAGGGCTATGGTGCTGATGAGGACACCTGGGAGCCTATTGAGGAACTGAGTCATTGTAAAGAGCGGGTACAAGAGTTTGTTTCTCAGGGTTATTCATCAAACCTATTGCCCTTACCTGGTGATGTGGATGTGATCTGTGGTGGACCACCATGCCAAGGAATAAGTGGATTTAACAGGTTTAGGAACGAAGAAGATCCATTGGATGATGAAAAAAACAAACAATTGAAAGTTTTCATGGATTTAGTTCAGTACCTTAAGCCCAAGCACGTTTTAATGGAAAATGTGGTTGACCTCGTGAAATTTGCTGATGGGTTCCTTGGTCGTTATGCATTGGGACGTCTTGTTCACATGAACTATCAAGCAAGGATGGGCATCATGGCAGCTGGGGCATATGGACTTCCGCAGTTTCGTTTGCGTATCTTTATGTGGGGAGCCCGGCCTACTGAGAGGTTGCCTCAATATCCATATCCGACACACGATGTCGTAGTAAGGGGTTGTATACCTACTGAATTTGAGAGAAATACTGTCGCTTATGATGAGGGTCATAATGTCAAACTAGAGAAAAAGCTCTTCCTGGCGGATGCGATTTCTGATCTCCCCCCTGTTGAGAATAGTGAAAACCAGGATGAAATGCCCTATGGGGAACCTCCCCAAACAGATTTTCAGAAGTGTATCAGACTCAGCAAGAATTATATGCTGCAGCTTTCAGTCAGTGAACCCTGGAATGAGACGCTATATGATCATCGTCCGTTAAAGCTGAATGAAGATGATTATGCACGTGTCTGCCTAGTACCTAAGAAAAAGGGTGGGAACTTTAGAGATCTACTAGGTGTTCATGTGCGTGATGGTGTAGTGGAGTGGGATCCTGATGTAGACAGAGAGTATTTGGATTCGGGGAAACCATTGGTAAATATATACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

699

Amino Acids

79.22

Weight (kDa)

4.99

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	110 - 202	1.3e-08	BAH domain
Chromo	PF00385	365 - 420	1e-09	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	430 - 551	3.4e-17	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1516
AccBSI	CCGCTC	1 cut(s)	1240
AccI	GTMKAC	3 cut(s)	794, 1675, 2049
AccII	CGCG	1 cut(s)	427
AciI	CCGC	6 cut(s)	13, 208, 684, 1240, 1577, 1754
AclWI	GGATC	7 cut(s)	397, 455, 1124, 1162, 1364, 2033, 2046
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	5 cut(s)	244, 368, 471, 1475, 1685
AcuI	CTGAAG	2 cut(s)	905, 1065
AcvI	CACGTG	1 cut(s)	1955
AcyI	GRCGYC	1 cut(s)	1513
AfaI	GTAC	7 cut(s)	229, 416, 1110, 1160, 1245, 1427, 1968
AfiI	CCNNNNNNNGG	4 cut(s)	12, 1177, 1292, 1331
AflII	CTTAAG	1 cut(s)	1430
AflIII	ACRYGT	1 cut(s)	1954
AgsI	TTSAA	5 cut(s)	155, 491, 630, 1018, 1402
AjnI	CCWGG	6 cut(s)	95, 1202, 1291, 1749, 1797, 1895
AjuI	GAANNNNNNNTTGG	2 cut(s)	1821, 1853
AloI	GAACNNNNNNTCC	4 cut(s)	119, 151, 1503, 1535
Alw26I	GTCTC	1 cut(s)	1898
AlwI	GGATC	7 cut(s)	397, 455, 1124, 1162, 1364, 2033, 2046
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	7 cut(s)	33, 121, 142, 179, 663, 799, 1613
ApeKI	GCWGC	4 cut(s)	82, 1556, 1873, 1876
ApoI	RAATTY	5 cut(s)	244, 368, 471, 1475, 1685
Asp700I	GAANNNNTTC	3 cut(s)	513, 933, 1406
AspLEI	GCGC	2 cut(s)	427, 788
AspS9I	GGNCC	4 cut(s)	122, 143, 180, 1319
AsuC2I	CCSGG	2 cut(s)	125, 1612
AsuHPI	GGTGA	3 cut(s)	128, 1139, 1307
AsuII	TTCGAA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	1319
BaeI	ACNNNNGTAYC	2 cut(s)	1235, 1268
BamHI	GGATCC	1 cut(s)	2038
BanII	GRGCYC	2 cut(s)	132, 1612
BauI	CACGAG	1 cut(s)	1469
BbrPI	CACGTG	1 cut(s)	1955
BbsI	GAAGAC	2 cut(s)	23, 39
BbvI	GCAGC	4 cut(s)	94, 1568, 1860, 1888
BccI	CCATC	9 cut(s)	107, 171, 281, 380, 557, 903, 1478, 1537, 2015
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	6 cut(s)	97, 1204, 1293, 1751, 1799, 1897
BclI	TGATCA	1 cut(s)	1915
BcnI	CCSGG	2 cut(s)	125, 1612
BcoDI	GTCTC	1 cut(s)	1898
BfaI	CTAG	9 cut(s)	258, 330, 365, 741, 764, 1112, 1733, 1964, 2003
BfmI	CTRYAG	1 cut(s)	1874
BfrI	CTTAAG	1 cut(s)	1430
BglII	AGATCT	1 cut(s)	1996
BisI	GCNGC	4 cut(s)	83, 1557, 1874, 1877
BlsI	GCNGC	4 cut(s)	84, 1558, 1875, 1878
BmcAI	AGTACT	1 cut(s)	1110
Bme1390I	CCNGG	8 cut(s)	97, 125, 1204, 1293, 1612, 1751, 1799, 1897
Bme18I	GGWCC	1 cut(s)	1319
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	4 cut(s)	122, 143, 180, 1319
BmiI	GGNNCC	6 cut(s)	129, 1209, 1490, 1609, 1821, 2040
BmrFI	CCNGG	8 cut(s)	97, 125, 1204, 1293, 1612, 1751, 1799, 1897
BmsI	GCATC	5 cut(s)	50, 195, 978, 1557, 1747
BpiI	GAAGAC	2 cut(s)	23, 39
BplI	GAGNNNNNCTC	2 cut(s)	1615, 1647
BpmI	CTGGAG	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	125, 1612
BsaAI	YACGTR	2 cut(s)	322, 1955
BsaBI	GATNNNNATC	1 cut(s)	1547
BsaHI	GRCGYC	1 cut(s)	1513
BsaJI	CCNNGG	6 cut(s)	36, 808, 1203, 1330, 1492, 1895
BsaWI	WCCGGW	1 cut(s)	1170
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 1177, 1292, 1331
Bse1I	ACTGG	2 cut(s)	729, 802
Bse3DI	GCAATG	2 cut(s)	795, 941
Bse8I	GATNNNNATC	1 cut(s)	1547
BseBI	CCWGG	6 cut(s)	97, 1204, 1293, 1751, 1799, 1897
BseDI	CCNNGG	6 cut(s)	36, 808, 1203, 1330, 1492, 1895
BseGI	GGATG	7 cut(s)	292, 895, 1309, 1384, 1548, 1762, 1807
BseJI	GATNNNNATC	1 cut(s)	1547
BseLI	CCNNNNNNNGG	4 cut(s)	12, 1177, 1292, 1331
BseMI	GCAATG	2 cut(s)	795, 941
BseMII	CTCAG	4 cut(s)	1214, 1274, 1611, 1870
BseNI	ACTGG	2 cut(s)	729, 802
BseXI	GCAGC	4 cut(s)	94, 1568, 1860, 1888
BseYI	CCCAGC	1 cut(s)	1559
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	7 cut(s)	35, 123, 144, 181, 665, 801, 1615
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	4 cut(s)	125, 666, 1171, 1612
BslFI	GGGAC	1 cut(s)	1524
BslI	CCNNNNNNNGG	4 cut(s)	12, 1177, 1292, 1331
BsmAI	GTCTC	1 cut(s)	1898
BsmBI	CGTCTC	1 cut(s)	1898
BsmFI	GGGAC	1 cut(s)	1524
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	7 cut(s)	35, 123, 144, 181, 665, 801, 1615
BsoBI	CYCGRG	1 cut(s)	518
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	132, 1612
BspACI	CCGC	6 cut(s)	13, 208, 684, 1240, 1577, 1754
BspANI	GGCC	7 cut(s)	35, 123, 144, 181, 665, 801, 1615
BspCNI	CTCAG	4 cut(s)	1215, 1273, 1612, 1869
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	6 cut(s)	129, 1209, 1490, 1609, 1821, 2040
BspMAI	CTGCAG	1 cut(s)	1878
BspPI	GGATC	7 cut(s)	397, 455, 1124, 1162, 1364, 2033, 2046
BspQI	GCTCTTC	1 cut(s)	1751
BspT104I	TTCGAA	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	1430
BsrBI	CCGCTC	1 cut(s)	1240
BsrDI	GCAATG	2 cut(s)	795, 941
BsrI	ACTGG	2 cut(s)	729, 802
BssECI	CCNNGG	6 cut(s)	36, 808, 1203, 1330, 1492, 1895
BssNAI	GTATAC	1 cut(s)	1676
BssNI	GRCGYC	1 cut(s)	1513
BssSI	CACGAG	1 cut(s)	1469
BssT1I	CCWWGG	3 cut(s)	808, 1330, 1492
Bst1107I	GTATAC	1 cut(s)	1676
Bst2BI	CACGAG	1 cut(s)	1469
Bst2UI	CCWGG	6 cut(s)	97, 1204, 1293, 1751, 1799, 1897
Bst4CI	ACNGT	3 cut(s)	436, 1163, 1702
Bst6I	CTCTTC	2 cut(s)	685, 1751
BstACI	GRCGYC	1 cut(s)	1513
BstAFI	CTTAAG	1 cut(s)	1430
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBAI	YACGTR	2 cut(s)	322, 1955
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	7 cut(s)	68, 169, 173, 648, 663, 826, 870
BstDEI	CTNAG	5 cut(s)	1223, 1260, 1620, 1856, 1971
BstF5I	GGATG	7 cut(s)	292, 895, 1309, 1384, 1548, 1762, 1807
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	2 cut(s)	427, 788
BstMAI	GTCTC	1 cut(s)	1898
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 821, 1562
BstNI	CCWGG	6 cut(s)	97, 1204, 1293, 1751, 1799, 1897
BstNSI	RCATGY	2 cut(s)	819, 872
BstSCI	CCNGG	8 cut(s)	95, 123, 1202, 1291, 1610, 1749, 1797, 1895
BstSFI	CTRYAG	1 cut(s)	1874
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	94, 1568, 1860, 1888
BstV2I	GAAGAC	2 cut(s)	23, 39
BstX2I	RGATCY	5 cut(s)	460, 1167, 1369, 1996, 2038
BstYI	RGATCY	5 cut(s)	460, 1167, 1369, 1996, 2038
BstZ17I	GTATAC	1 cut(s)	1676
BsuRI	GGCC	7 cut(s)	35, 123, 144, 181, 665, 801, 1615
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	7 cut(s)	292, 895, 1309, 1384, 1548, 1762, 1807
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	3 cut(s)	375, 1068, 1894
Cac8I	GCNNGC	7 cut(s)	68, 169, 173, 648, 663, 826, 870
CfoI	GCGC	2 cut(s)	427, 788
Cfr13I	GGNCC	4 cut(s)	122, 143, 180, 1319
CseI	GACGC	3 cut(s)	173, 323, 1915
CsiI	ACCWGGT	1 cut(s)	1291
Csp6I	GTAC	7 cut(s)	228, 415, 1109, 1159, 1244, 1426, 1967
CviAII	CATG	8 cut(s)	816, 869, 1010, 1326, 1411, 1525, 1552, 2012
CviQI	GTAC	7 cut(s)	228, 415, 1109, 1159, 1244, 1426, 1967
DdeI	CTNAG	5 cut(s)	1223, 1260, 1620, 1856, 1971
DraI	TTTAAA	1 cut(s)	1030
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	685, 1751
EarI	CTCTTC	2 cut(s)	685, 1751
EciI	GGCGGA	1 cut(s)	1769
Eco130I	CCWWGG	3 cut(s)	808, 1330, 1492
Eco24I	GRGCYC	2 cut(s)	132, 1612
Eco47I	GGWCC	1 cut(s)	1319
Eco57I	CTGAAG	2 cut(s)	905, 1065
Eco72I	CACGTG	1 cut(s)	1955
Eco88I	CYCGRG	1 cut(s)	518
EcoRII	CCWGG	6 cut(s)	95, 1202, 1291, 1749, 1797, 1895
EcoT14I	CCWWGG	3 cut(s)	808, 1330, 1492
EcoT22I	ATGCAT	1 cut(s)	1507
EcoT38I	GRGCYC	2 cut(s)	132, 1612
ErhI	CCWWGG	3 cut(s)	808, 1330, 1492
Esp3I	CGTCTC	1 cut(s)	1898
FaeI	CATG	8 cut(s)	819, 872, 1013, 1329, 1414, 1528, 1555, 2015
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FaqI	GGGAC	1 cut(s)	1524
FatI	CATG	8 cut(s)	815, 868, 1009, 1325, 1410, 1524, 1551, 2011
FauI	CCCGC	2 cut(s)	201, 1233
FauNDI	CATATG	1 cut(s)	1567
FbaI	TGATCA	1 cut(s)	1915
FblI	GTMKAC	3 cut(s)	794, 1675, 2049
Fnu4HI	GCNGC	4 cut(s)	83, 1557, 1874, 1877
FokI	GGATG	7 cut(s)	299, 882, 1316, 1391, 1555, 1769, 1814
FriOI	GRGCYC	2 cut(s)	132, 1612
Fsp4HI	GCNGC	4 cut(s)	83, 1557, 1874, 1877
FspBI	CTAG	9 cut(s)	258, 330, 365, 741, 764, 1112, 1733, 1964, 2003
GlaI	GCGC	2 cut(s)	426, 787
GluI	GCNGC	4 cut(s)	83, 1557, 1874, 1877
GsaI	CCCAGC	1 cut(s)	1563
GsuI	CTGGAG	1 cut(s)	712
HaeIII	GGCC	7 cut(s)	35, 123, 144, 181, 665, 801, 1615
HapII	CCGG	4 cut(s)	125, 666, 1171, 1612
HgaI	GACGC	3 cut(s)	173, 323, 1915
HhaI	GCGC	2 cut(s)	427, 788
Hin1I	GRCGYC	1 cut(s)	1513
Hin1II	CATG	8 cut(s)	819, 872, 1013, 1329, 1414, 1528, 1555, 2015
Hin6I	GCGC	2 cut(s)	425, 786
HinP1I	GCGC	2 cut(s)	425, 786
HincII	GTYRAC	3 cut(s)	93, 795, 1465
HindII	GTYRAC	3 cut(s)	93, 795, 1465
HindIII	AAGCTT	2 cut(s)	524, 1080
HinfI	GANTC	9 cut(s)	53, 487, 580, 737, 920, 998, 1225, 1854, 2066
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	4 cut(s)	125, 666, 1171, 1612
HphI	GGTGA	3 cut(s)	128, 1139, 1307
Hpy188III	TCNNGA	8 cut(s)	155, 365, 491, 520, 584, 899, 1471, 2042
Hpy99I	CGWCG	2 cut(s)	164, 167
HpyAV	CCTTC	3 cut(s)	55, 524, 1171
HpyCH4III	ACNGT	3 cut(s)	436, 1163, 1702
HpyCH4IV	ACGT	4 cut(s)	321, 1443, 1513, 1954
HpyCH4V	TGCA	7 cut(s)	380, 407, 815, 969, 1505, 1876, 1952
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 821, 1562
HpyF3I	CTNAG	5 cut(s)	1223, 1260, 1620, 1856, 1971
HpySE526I	ACGT	4 cut(s)	321, 1443, 1513, 1954
Hsp92I	GRCGYC	1 cut(s)	1513
Hsp92II	CATG	8 cut(s)	819, 872, 1013, 1329, 1414, 1528, 1555, 2015
HspAI	GCGC	2 cut(s)	425, 786
Ksp22I	TGATCA	1 cut(s)	1915
KspAI	GTTAAC	1 cut(s)	93
LguI	GCTCTTC	1 cut(s)	1751
LmnI	GCTCC	4 cut(s)	127, 731, 1207, 1607
Lsp1109I	GCAGC	4 cut(s)	94, 1568, 1860, 1888
LweI	GCATC	5 cut(s)	50, 195, 978, 1557, 1747
MabI	ACCWGGT	1 cut(s)	1291
MaeI	CTAG	9 cut(s)	258, 330, 365, 741, 764, 1112, 1733, 1964, 2003
MaeII	ACGT	4 cut(s)	321, 1443, 1513, 1954
MaeIII	GTNAC	5 cut(s)	116, 263, 590, 618, 838
MbiI	CCGCTC	1 cut(s)	1240
MfeI	CAATTG	2 cut(s)	381, 1397
MflI	RGATCY	5 cut(s)	460, 1167, 1369, 1996, 2038
MhlI	GDGCHC	2 cut(s)	132, 1612
MlyI	GAGTC	3 cut(s)	746, 1234, 1848
MmeI	TCCRAC	3 cut(s)	88, 967, 1670
Mph1103I	ATGCAT	1 cut(s)	1507
MroXI	GAANNNNTTC	3 cut(s)	513, 933, 1406
MslI	CAYNNNNRTG	2 cut(s)	873, 2016
MspA1I	CMGCKG	1 cut(s)	1559
MspCI	CTTAAG	1 cut(s)	1430
MspI	CCGG	4 cut(s)	125, 666, 1171, 1612
MspR9I	CCNGG	8 cut(s)	97, 125, 1204, 1293, 1612, 1751, 1799, 1897
MunI	CAATTG	2 cut(s)	381, 1397
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	6 cut(s)	97, 1204, 1293, 1751, 1799, 1897
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	3 cut(s)	10, 821, 1562
NciI	CCSGG	2 cut(s)	125, 1612
NdeI	CATATG	1 cut(s)	1567
NlaIII	CATG	8 cut(s)	819, 872, 1013, 1329, 1414, 1528, 1555, 2015
NlaIV	GGNNCC	6 cut(s)	129, 1209, 1490, 1609, 1821, 2040
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	3 cut(s)	116, 263, 590
NsiI	ATGCAT	1 cut(s)	1507
NspI	RCATGY	2 cut(s)	819, 872
NspV	TTCGAA	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	872
PciSI	GCTCTTC	1 cut(s)	1751
PctI	GAATGC	1 cut(s)	515
PdmI	GAANNNNTTC	3 cut(s)	513, 933, 1406
PfeI	GAWTC	6 cut(s)	53, 487, 580, 920, 998, 2066
PkrI	GCNGC	4 cut(s)	84, 1558, 1875, 1878
PleI	GAGTC	3 cut(s)	745, 1233, 1848
PmaCI	CACGTG	1 cut(s)	1955
PmlI	CACGTG	1 cut(s)	1955
PpsI	GAGTC	3 cut(s)	745, 1233, 1848
Ppu21I	YACGTR	2 cut(s)	322, 1955
Psp6I	CCWGG	6 cut(s)	95, 1202, 1291, 1749, 1797, 1895
PspCI	CACGTG	1 cut(s)	1955
PspFI	CCCAGC	1 cut(s)	1559
PspGI	CCWGG	6 cut(s)	95, 1202, 1291, 1749, 1797, 1895
PspN4I	GGNNCC	6 cut(s)	129, 1209, 1490, 1609, 1821, 2040
PspPI	GGNCC	4 cut(s)	122, 143, 180, 1319
PstI	CTGCAG	1 cut(s)	1878
PsuI	RGATCY	5 cut(s)	460, 1167, 1369, 1996, 2038
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	7 cut(s)	229, 416, 1110, 1160, 1245, 1427, 1968
RsaNI	GTAC	7 cut(s)	228, 415, 1109, 1159, 1244, 1426, 1967
RseI	CAYNNNNRTG	2 cut(s)	873, 2016
SalI	GTCGAC	1 cut(s)	793
SapI	GCTCTTC	1 cut(s)	1751
SatI	GCNGC	4 cut(s)	83, 1557, 1874, 1877
Sau96I	GGNCC	4 cut(s)	122, 143, 180, 1319
ScaI	AGTACT	1 cut(s)	1110
SchI	GAGTC	3 cut(s)	746, 1234, 1848
ScrFI	CCNGG	8 cut(s)	97, 125, 1204, 1293, 1612, 1751, 1799, 1897
SduI	GDGCHC	2 cut(s)	132, 1612
SexAI	ACCWGGT	1 cut(s)	1291
SfaNI	GCATC	5 cut(s)	50, 195, 978, 1557, 1747
SfcI	CTRYAG	1 cut(s)	1874
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	1 cut(s)	1319
SmiMI	CAYNNNNRTG	2 cut(s)	873, 2016
SmlI	CTYRAG	1 cut(s)	1430
SmoI	CTYRAG	1 cut(s)	1430
SphI	GCATGC	1 cut(s)	872
SsiI	CCGC	6 cut(s)	13, 208, 684, 1240, 1577, 1754
SspI	AATATT	2 cut(s)	532, 614
SspMI	CTAG	9 cut(s)	258, 330, 365, 741, 764, 1112, 1733, 1964, 2003
StyD4I	CCNGG	8 cut(s)	95, 123, 1202, 1291, 1610, 1749, 1797, 1895
StyI	CCWWGG	3 cut(s)	808, 1330, 1492
TaaI	ACNGT	3 cut(s)	436, 1163, 1702
TaiI	ACGT	4 cut(s)	324, 1446, 1516, 1957
TaqI	TCGA	3 cut(s)	56, 555, 794
TatI	WGTACW	2 cut(s)	1108, 1158
TfiI	GAWTC	6 cut(s)	53, 487, 580, 920, 998, 2066
TscAI	CASTG	3 cut(s)	382, 1075, 1894
TseFI	GTSAC	3 cut(s)	116, 263, 590
TseI	GCWGC	4 cut(s)	82, 1556, 1873, 1876
Tsp45I	GTSAC	3 cut(s)	116, 263, 590
TspGWI	ACGGA	1 cut(s)	1914
TspRI	CASTG	3 cut(s)	382, 1075, 1894
Vha464I	CTTAAG	1 cut(s)	1430
VpaK11BI	GGWCC	1 cut(s)	1319
XapI	RAATTY	5 cut(s)	244, 368, 471, 1475, 1685
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	2 cut(s)	819, 872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 1337
XmiI	GTMKAC	3 cut(s)	794, 1675, 2049
XmnI	GAANNNNTTC	3 cut(s)	513, 933, 1406
XspI	CTAG	9 cut(s)	258, 330, 365, 741, 764, 1112, 1733, 1964, 2003
ZraI	GACGTC	1 cut(s)	1514
ZrmI	AGTACT	1 cut(s)	1110
Zsp2I	ATGCAT	1 cut(s)	1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.