Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

62029279 .. 62034751

Gene Structure 5473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGGTGACGCCGCGGAAGAAGAACCCTAAGGCGTCTCCGAAATCGAAGAAGACAACCGATCCGGAGCAAGCTTCACCGGAGGTACCTGCTTCTGCCACGGTCGTTGACGGCGGAGAGATGAATCCATCGGCGAGGAAGAACAAGTCCAATGCGCCTCCCGCCTCGGCTCCGGAACCTAAGAAGTCGAAGAGAACCAGGCCGAAGGCAGGTCCTTGTTCCATTGTCGTCGACGGCCCGGAGCCTACTTTCGTCAGCGAACCGCTTACCAACGAGGAGGCTCGGCGGAGATGGCCCGAATCGTACCGAAAGGAGAAGCAAGTTGCAGGACCAATCAGCTCTAAGGGAGATGAAGATTTTCTTCAGGCTCGTTCTCACTTTACAAAGGCTGAAGTGGATGGTATAAGATATGATCTATATGATGATGCTCATGTTCTGGCTGGAGAAGGAGAGCCACAATACATTTGCAAGATAGTTGAGATGTTTGAGGCAGTTGATGGGCAGTTATATTTTACAGCTCAATGGTACTACCGAGTACAAGACACTGTCGTCAAAGACTGTGTTGAGATTGATAGTAGACGCGTTTTCTTCTCAGATGTGAAGGACCGCAATCCTTTGGAATGTCTTCTTGAAAAGATTACTATTGTTAGATTGGCTCTAAATGTTGATCCTGATGTTAAGAACAAACTTATTCAAGAGTGCAAGTATTATTGTGACACCAAATACTTGTTGCCTCATTCAACTTTTGTCAATTTACTACCAGAAAATATGCAATCGGGAAGTCATATTCCATCAACAATTTCAAGTGGGGTTGTTGGTGAATCTTGTCATGTTAACTCAGAACTTACGAAAAGCTCCATAGTCAGGGAGCAATGCTTACAAGAACTTAAATTGCTGGACTTATATGCTGGGTGTGGTGGGATGTCAACTGGCCTATGTTTGGGTGCCCGATTATCCAACGTAAATCTTGTCACGAGATGGGCTGTTGATATAAATGAATATGCGCTCAAAAGTCTAAAGCTTAATCATCCAGAAACTGAGGTTAGAAAGGAATATGCGGAAAACTTTCTGATTTTGCTCAAGAAGTGGAAGGGACTATGCATTTCTTTTAACTTGGCTGAGGGTGACAATTCAGAGATACCGGTCAATTTCTTTGCAACAAATGACCCTTCAGATGAAGAAGAGGATGACGACCAGAATAAGGATAATGCTGAAGATTCTGAGGTTTATGAAGTTGAAAAAATACTTGATATATGTTATGGGGAACCAGAAGAGAAAGATAGGGGGCTGTACTTCAAGGTTCATTGGAAGGGCTATGGTTCAGATGAAGATACTTGGGAGCCTATTGAGTCACTGAGGGATTGCAAGGATAGTGTACAAGAATTTGTTTCTCGTGGCTTCAGATCAAAAATGTTGCCGTTACCTGGAGATGTTGATGTGGTGTGTGGTGGACCACCTTGCCAGGGAATAAGCGGATTCAACCGATTTAGGGACAAGGAAAATCCTTTGAATGATAAGAAAAATGAACAGGTGGTTGTTTTCATGGACATAGTTCAATACCTTAAGCCTAAGTATGTCTTGATGGAAAATGTGGTCGACCTTTTGAAATTTGCGGAAGGATTCCTTGGGCGATATGCCATTGGACGTCTTGTTGATATGAACTATCAGGCAAGGATTGGTATGATGTGTGCAGGAGCATATGGTCTTCCTCAATTCCGTATGCGGGTTTTTCTATGGGGGGCCTGTCCTACTGAGCGGTTGCCACAATACCCACTTCCTACACATGATGTTGTTGTCAAGGGTCATACTCCAACTGAATGGGAGGAGAATGCAGTTTGTAGTGAAGGGCATCAATCTACATTGAAAGAAAAGCTCTTTTTGGAGGATGCTCTATCTGACCTTCCTGCTGTAAATAATAATGAGTGTCGTGATGAGATGCCATATGGAAGTCCCCCCCAGACTGAGTTCCAGAAGATGATTAGACTTAGCAGAAACTATTTATTGGGATCTTCAAAGAGTGAGCCTTATAATGTGATGCTATATGATCACCAGCCTTTGACAGTGAATGCTGACGATTATGCTCGTATATGTCGCATTCCCAAAGAGAAGGGTGCGAATTTTAGAAACCTAACTGGTGTTCGAGTGCGTCCTGATAAAAAAGTTGAATGGAATCCTGATGTAGACAGGGTTTATTTGGACTCTGGCGCTCCTTTGGTCCCTGACTATGCTATGTCATTTGTGAAAGGGAAATCATCAAAACCGTTCGGGCGTTTGTGGTGGGACGAAATAGTGTCCACCGTTGTCACTCGGGCCGAGCCCCACAATCAGGCTATCTTGCATCCTGATCAAGACAGAGTGTTGACTATACGTGAAAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAACTCTGCGGGCCAGTTAAAGAAAGATACATTCAAGTCGGGAATGCCGTAGCAGTTCCTGTCGCGCGTGCTCTGGGATATGCACTAGGGCGTGCTCTCAATGGTTTAGTTGATCATCGTTCTATGTTTGAGTTGCCTGATGGGTTCCCCAATCATCTGGAAGAGATTCCTTCTCCAGAAGTTAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

864

Amino Acids

97.68

Weight (kDa)

5.39

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	148 - 241	7.9e-10	BAH domain
Chromo	PF00385	409 - 464	1.2e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	473 - 830	1.2e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2025
AasI	GACNNNNNNGTC	1 cut(s)	545
AatII	GACGTC	1 cut(s)	1645
Acc36I	ACCTGC	2 cut(s)	94, 197
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	2 cut(s)	82, 941
AccBSI	CCGCTC	1 cut(s)	1753
AccI	GTMKAC	4 cut(s)	228, 574, 1593, 2178
AccII	CGCG	4 cut(s)	13, 579, 2468, 2470
AccIII	TCCGGA	2 cut(s)	61, 169
AclWI	GGATC	3 cut(s)	53, 659, 2011
AcsI	RAATTY	3 cut(s)	1379, 1604, 2113
AcuI	CTGAAG	5 cut(s)	344, 408, 1152, 1230, 1381
AcyI	GRCGYC	3 cut(s)	8, 32, 1642
AfaI	GTAC	6 cut(s)	84, 302, 524, 534, 1289, 1374
AfiI	CCNNNNNNNGG	9 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720, 2323
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	1138
AjnI	CCWGG	3 cut(s)	194, 1420, 1458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1605, 1637
AluBI	AGCT	6 cut(s)	71, 336, 515, 852, 1018, 1870
AluI	AGCT	6 cut(s)	71, 336, 515, 852, 1018, 1870
Alw21I	GWGCWC	2 cut(s)	2476, 2500
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	3 cut(s)	53, 659, 2011
AlwNI	CAGNNNCTG	2 cut(s)	1034, 2462
Ama87I	CYCGRG	1 cut(s)	2304
Aor13HI	TCCGGA	2 cut(s)	61, 169
AoxI	GGCC	7 cut(s)	197, 232, 290, 928, 1737, 2307, 2414
ApoI	RAATTY	3 cut(s)	1379, 1604, 2113
AsiGI	ACCGGT	1 cut(s)	1138
Asp700I	GAANNNNTTC	4 cut(s)	354, 621, 1062, 2568
Asp718I	GGTACC	1 cut(s)	82
AspLEI	GCGC	4 cut(s)	154, 1003, 2204, 2470
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	5 cut(s)	16, 66, 827, 1133, 2036
AvaI	CYCGRG	1 cut(s)	2304
AvaII	GGWCC	5 cut(s)	209, 326, 601, 1448, 2212
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	946
BanI	GGYRCC	2 cut(s)	82, 941
BanII	GRGCYC	1 cut(s)	2316
BauI	CACGAG	2 cut(s)	970, 1389
BbsI	GAAGAC	3 cut(s)	56, 614, 1694
Bbv12I	GWGCWC	2 cut(s)	2476, 2500
BbvCI	CCTCAGC	1 cut(s)	1116
BccI	CCATC	8 cut(s)	133, 282, 389, 488, 796, 969, 1573, 2537
BceAI	ACGGC	4 cut(s)	124, 247, 1399, 2435
BciT130I	CCWGG	3 cut(s)	196, 1422, 1460
BclI	TGATCA	3 cut(s)	2041, 2341, 2515
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	2489
BfoI	RGCGCY	1 cut(s)	2205
BfrI	CTTAAG	1 cut(s)	1559
BfuAI	ACCTGC	2 cut(s)	94, 197
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	4 cut(s)	196, 236, 1422, 1460
Bme18I	GGWCC	5 cut(s)	209, 326, 601, 1448, 2212
BmeT110I	CYCGRG	1 cut(s)	2304
BmrFI	CCNGG	4 cut(s)	196, 236, 1422, 1460
BmsI	GCATC	6 cut(s)	412, 1855, 1873, 1923, 2022, 2344
BpiI	GAAGAC	3 cut(s)	56, 614, 1694
BpmI	CTGGAG	3 cut(s)	459, 1443, 2562
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	1 cut(s)	1061
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	2366
BsaHI	GRCGYC	3 cut(s)	8, 32, 1642
BsaJI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BsaWI	WCCGGW	4 cut(s)	61, 76, 169, 1138
Bsc4I	CCNNNNNNNGG	9 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720, 2323
Bse118I	RCCGGY	1 cut(s)	1138
Bse1I	ACTGG	3 cut(s)	931, 2134, 2417
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	875
BseAI	TCCGGA	2 cut(s)	61, 169
BseBI	CCWGG	3 cut(s)	196, 1422, 1460
BseDI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BseGI	GGATG	6 cut(s)	400, 924, 1024, 1189, 1888, 2335
BseLI	CCNNNNNNNGG	9 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720, 2323
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	8 cut(s)	603, 849, 1026, 1107, 1209, 1343, 1740, 1950
BseNI	ACTGG	3 cut(s)	931, 2134, 2417
BseRI	GAGGAG	2 cut(s)	287, 1835
BseSI	GKGCMC	1 cut(s)	946
BseYI	CCCAGC	1 cut(s)	905
BsgI	GTGCAG	1 cut(s)	1707
Bsh1236I	CGCG	4 cut(s)	13, 579, 2468, 2470
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	7 cut(s)	199, 234, 292, 930, 1739, 2309, 2416
BshNI	GGYRCC	2 cut(s)	82, 941
BshTI	ACCGGT	1 cut(s)	1138
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	2476, 2500
BsiHKCI	CYCGRG	1 cut(s)	2304
BsiSI	CCGG	5 cut(s)	62, 77, 170, 236, 1139
BslFI	GGGAC	5 cut(s)	1104, 1502, 1932, 2198, 2291
BslI	CCNNNNNNNGG	9 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720, 2323
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	5 cut(s)	1104, 1502, 1932, 2198, 2291
BsmI	GAATGC	4 cut(s)	1831, 2068, 2091, 2452
BsnI	GGCC	7 cut(s)	199, 234, 292, 930, 1739, 2309, 2416
BsoBI	CYCGRG	1 cut(s)	2304
Bsp1286I	GDGCHC	4 cut(s)	946, 2316, 2476, 2500
Bsp13I	TCCGGA	2 cut(s)	61, 169
Bsp1407I	TGTACA	1 cut(s)	1372
Bsp143I	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
BspANI	GGCC	7 cut(s)	199, 234, 292, 930, 1739, 2309, 2416
BspCNI	CTCAG	8 cut(s)	602, 848, 1027, 1108, 1210, 1344, 1741, 1951
BspEI	TCCGGA	2 cut(s)	61, 169
BspFNI	CGCG	4 cut(s)	13, 579, 2468, 2470
BspMI	ACCTGC	2 cut(s)	94, 197
BspPI	GGATC	3 cut(s)	53, 659, 2011
BspT107I	GGYRCC	2 cut(s)	82, 941
BspTI	CTTAAG	1 cut(s)	1559
BsrBI	CCGCTC	1 cut(s)	1753
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	1138
BsrGI	TGTACA	1 cut(s)	1372
BsrI	ACTGG	3 cut(s)	931, 2134, 2417
BssAI	RCCGGY	1 cut(s)	1138
BssECI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BssMI	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
BssNI	GRCGYC	3 cut(s)	8, 32, 1642
BssSI	CACGAG	2 cut(s)	970, 1389
BssT1I	CCWWGG	1 cut(s)	1621
Bst2BI	CACGAG	2 cut(s)	970, 1389
Bst2UI	CCWGG	3 cut(s)	196, 1422, 1460
Bst4CI	ACNGT	6 cut(s)	100, 544, 557, 2059, 2259, 2296
Bst6I	CTCTTC	4 cut(s)	182, 1173, 1263, 2559
BstACI	GRCGYC	3 cut(s)	8, 32, 1642
BstAFI	CTTAAG	1 cut(s)	1559
BstAUI	TGTACA	1 cut(s)	1372
BstBAI	YACGTR	1 cut(s)	2366
BstC8I	GCNNGC	4 cut(s)	69, 2414, 2472, 2496
BstDSI	CCRYGG	2 cut(s)	11, 96
BstF5I	GGATG	6 cut(s)	400, 924, 1024, 1189, 1888, 2335
BstFNI	CGCG	4 cut(s)	13, 579, 2468, 2470
BstH2I	RGCGCY	1 cut(s)	2205
BstHHI	GCGC	4 cut(s)	154, 1003, 2204, 2470
BstKTI	GATC	8 cut(s)	61, 412, 667, 1403, 2006, 2044, 2344, 2518
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 289
BstNI	CCWGG	3 cut(s)	196, 1422, 1460
BstSCI	CCNGG	4 cut(s)	194, 234, 1420, 1458
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	4 cut(s)	13, 579, 2468, 2470
BstV2I	GAAGAC	3 cut(s)	56, 614, 1694
BstX2I	RGATCY	1 cut(s)	2003
BstXI	CCANNNNNNTGG	2 cut(s)	1815, 2560
BstYI	RGATCY	1 cut(s)	2003
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	7 cut(s)	199, 234, 292, 930, 1739, 2309, 2416
BtgI	CCRYGG	2 cut(s)	11, 96
BtsCI	GGATG	6 cut(s)	400, 924, 1024, 1189, 1888, 2335
BtsIMutI	CAGTG	3 cut(s)	540, 1349, 2064
BveI	ACCTGC	2 cut(s)	94, 197
Cac8I	GCNNGC	4 cut(s)	69, 2414, 2472, 2496
CaiI	CAGNNNCTG	2 cut(s)	1034, 2462
CfoI	GCGC	4 cut(s)	154, 1003, 2204, 2470
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	4 cut(s)	16, 21, 585, 2132
Csp6I	GTAC	6 cut(s)	83, 301, 523, 533, 1288, 1373
CspAI	ACCGGT	1 cut(s)	1138
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	4 cut(s)	428, 827, 1540, 1781
CviQI	GTAC	6 cut(s)	83, 301, 523, 533, 1288, 1373
DpnI	GATC	8 cut(s)	60, 411, 666, 1402, 2005, 2043, 2343, 2517
DpnII	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	4 cut(s)	182, 1173, 1263, 2559
EarI	CTCTTC	4 cut(s)	182, 1173, 1263, 2559
EciI	GGCGGA	2 cut(s)	126, 298
Eco130I	CCWWGG	1 cut(s)	1621
Eco24I	GRGCYC	1 cut(s)	2316
Eco47I	GGWCC	5 cut(s)	209, 326, 601, 1448, 2212
Eco57I	CTGAAG	5 cut(s)	344, 408, 1152, 1230, 1381
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	2304
EcoO109I	RGGNCCY	2 cut(s)	209, 1737
EcoRII	CCWGG	3 cut(s)	194, 1420, 1458
EcoT14I	CCWWGG	1 cut(s)	1621
EcoT22I	ATGCAT	1 cut(s)	1100
EcoT38I	GRGCYC	1 cut(s)	2316
ErhI	CCWWGG	1 cut(s)	1621
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	431, 830, 1543, 1784
FalI	AAGNNNNNCTT	6 cut(s)	342, 374, 1559, 1591, 1605, 1637
FaqI	GGGAC	5 cut(s)	1104, 1502, 1932, 2198, 2291
FatI	CATG	4 cut(s)	427, 826, 1539, 1780
FauI	CCCGC	3 cut(s)	166, 1713, 2405
FauNDI	CATATG	2 cut(s)	1696, 1939
FbaI	TGATCA	3 cut(s)	2041, 2341, 2515
FblI	GTMKAC	4 cut(s)	228, 574, 1593, 2178
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	6 cut(s)	407, 931, 1011, 1196, 1895, 2322
FriOI	GRGCYC	1 cut(s)	2316
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	2489
GlaI	GCGC	4 cut(s)	153, 1002, 2203, 2469
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	3 cut(s)	459, 1443, 2562
HaeII	RGCGCY	1 cut(s)	2205
HaeIII	GGCC	7 cut(s)	199, 234, 292, 930, 1739, 2309, 2416
HapII	CCGG	5 cut(s)	62, 77, 170, 236, 1139
HgaI	GACGC	4 cut(s)	16, 21, 585, 2132
HhaI	GCGC	4 cut(s)	154, 1003, 2204, 2470
Hin1I	GRCGYC	3 cut(s)	8, 32, 1642
Hin1II	CATG	4 cut(s)	431, 830, 1543, 1784
Hin6I	GCGC	4 cut(s)	152, 1001, 2202, 2468
HinP1I	GCGC	4 cut(s)	152, 1001, 2202, 2468
HincII	GTYRAC	6 cut(s)	106, 229, 832, 924, 1594, 2358
HindII	GTYRAC	6 cut(s)	106, 229, 832, 924, 1594, 2358
HindIII	AAGCTT	2 cut(s)	69, 1016
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	5 cut(s)	62, 77, 170, 236, 1139
HphI	GGTGA	5 cut(s)	16, 66, 827, 1133, 2036
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyCH4III	ACNGT	6 cut(s)	100, 544, 557, 2059, 2259, 2296
HpyCH4IV	ACGT	3 cut(s)	957, 1642, 2365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 289
HpySE526I	ACGT	3 cut(s)	957, 1642, 2365
Hsp92I	GRCGYC	3 cut(s)	8, 32, 1642
Hsp92II	CATG	4 cut(s)	431, 830, 1543, 1784
HspAI	GCGC	4 cut(s)	152, 1001, 2202, 2468
Kpn2I	TCCGGA	2 cut(s)	61, 169
KpnI	GGTACC	1 cut(s)	86
Ksp22I	TGATCA	3 cut(s)	2041, 2341, 2515
KspAI	GTTAAC	1 cut(s)	832
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
LmnI	GCTCC	8 cut(s)	64, 172, 238, 857, 865, 1336, 1691, 2209
LweI	GCATC	6 cut(s)	412, 1855, 1873, 1923, 2022, 2344
MaeI	CTAG	1 cut(s)	2489
MaeII	ACGT	3 cut(s)	957, 1642, 2365
MaeIII	GTNAC	7 cut(s)	4, 710, 967, 1121, 1347, 1416, 2299
MalI	GATC	8 cut(s)	60, 411, 666, 1402, 2005, 2043, 2343, 2517
MbiI	CCGCTC	1 cut(s)	1753
MboI	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
MflI	RGATCY	1 cut(s)	2003
MhlI	GDGCHC	4 cut(s)	946, 2316, 2476, 2500
MluCI	AATT	9 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709, 2113
MluI	ACGCGT	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	1355, 2189
MmeI	TCCRAC	2 cut(s)	978, 1832
Mph1103I	ATGCAT	1 cut(s)	1100
MroI	TCCGGA	2 cut(s)	61, 169
MroXI	GAANNNNTTC	4 cut(s)	354, 621, 1062, 2568
MseI	TTAA	7 cut(s)	675, 831, 885, 1020, 1107, 1560, 2421
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	5 cut(s)	62, 77, 170, 236, 1139
MspR9I	CCNGG	4 cut(s)	196, 236, 1422, 1460
Mva1269I	GAATGC	4 cut(s)	1831, 2068, 2091, 2452
MvaI	CCWGG	3 cut(s)	196, 1422, 1460
MvnI	CGCG	4 cut(s)	13, 579, 2468, 2470
MwoI	GCNNNNNNNGC	2 cut(s)	158, 289
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	2 cut(s)	1696, 1939
NdeII	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
NlaIII	CATG	4 cut(s)	431, 830, 1543, 1784
NmeAIII	GCCGAG	3 cut(s)	143, 259, 2335
NmuCI	GTSAC	6 cut(s)	4, 710, 967, 1121, 1347, 2299
NsiI	ATGCAT	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	1 cut(s)	2448
PctI	GAATGC	4 cut(s)	1831, 2068, 2091, 2452
PdmI	GAANNNNTTC	4 cut(s)	354, 621, 1062, 2568
PfeI	GAWTC	8 cut(s)	121, 296, 818, 1214, 1473, 1617, 2167, 2569
PflFI	GACNNNGTC	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	1138
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	1354, 2189
PpsI	GAGTC	2 cut(s)	1354, 2189
Ppu21I	YACGTR	1 cut(s)	2366
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	2025
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	3 cut(s)	194, 1420, 1458
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	3 cut(s)	194, 1420, 1458
PspPPI	RGGWCCY	1 cut(s)	209
PstNI	CAGNNNCTG	2 cut(s)	1034, 2462
PsuI	RGATCY	1 cut(s)	2003
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	6 cut(s)	84, 302, 524, 534, 1289, 1374
RsaNI	GTAC	6 cut(s)	83, 301, 523, 533, 1288, 1373
SacII	CCGCGG	1 cut(s)	14
SalI	GTCGAC	2 cut(s)	227, 1592
SaqAI	TTAA	7 cut(s)	675, 831, 885, 1020, 1107, 1560, 2421
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	8 cut(s)	58, 409, 664, 1400, 2003, 2041, 2341, 2515
SchI	GAGTC	2 cut(s)	1355, 2189
ScrFI	CCNGG	4 cut(s)	196, 236, 1422, 1460
SduI	GDGCHC	4 cut(s)	946, 2316, 2476, 2500
SfaNI	GCATC	6 cut(s)	412, 1855, 1873, 1923, 2022, 2344
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	5 cut(s)	209, 326, 601, 1448, 2212
SmlI	CTYRAG	2 cut(s)	1076, 1559
SmoI	CTYRAG	2 cut(s)	1076, 1559
Sse9I	AATT	9 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709, 2113
SspMI	CTAG	1 cut(s)	2489
StyD4I	CCNGG	4 cut(s)	194, 234, 1420, 1458
StyI	CCWWGG	1 cut(s)	1621
TaaI	ACNGT	6 cut(s)	100, 544, 557, 2059, 2259, 2296
TaiI	ACGT	3 cut(s)	960, 1645, 2368
TaqI	TCGA	5 cut(s)	44, 185, 228, 1593, 2137
TasI	AATT	9 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709, 2113
TatI	WGTACW	3 cut(s)	532, 1287, 1372
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	8 cut(s)	121, 296, 818, 1214, 1473, 1617, 2167, 2569
Tru1I	TTAA	7 cut(s)	675, 831, 885, 1020, 1107, 1560, 2421
Tru9I	TTAA	7 cut(s)	675, 831, 885, 1020, 1107, 1560, 2421
TscAI	CASTG	3 cut(s)	547, 1356, 2064
TseFI	GTSAC	6 cut(s)	4, 710, 967, 1121, 1347, 2299
Tsp45I	GTSAC	6 cut(s)	4, 710, 967, 1121, 1347, 2299
TspGWI	ACGGA	1 cut(s)	1703
TspRI	CASTG	3 cut(s)	547, 1356, 2064
Tth111I	GACNNNGTC	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	5 cut(s)	209, 326, 601, 1448, 2212
XapI	RAATTY	3 cut(s)	1379, 1604, 2113
XmiI	GTMKAC	4 cut(s)	228, 574, 1593, 2178
XmnI	GAANNNNTTC	4 cut(s)	354, 621, 1062, 2568
XspI	CTAG	1 cut(s)	2489
ZraI	GACGTC	1 cut(s)	1643
Zsp2I	ATGCAT	1 cut(s)	1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.