Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

841048 .. 842385

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1011200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACGACGGAGGGGAAGCGAGGTTTCTTGGCGAACCGATGGAAGACGAGGAGGCTCGTAAGCAATACTCCAAGAGATATGGGAAAGAAGCCGAAGATGAATGGGCAAAACAACTCCAACGATGATGAAGATATAATTCAAGCTCGTCGTCACTACACAATCGCGTTGGTAGATGGAATCAATTATGATCTCTATGATGATGCCCATGTATTTGTGAGTTTGCATGACTCGTTGTTTGTTGGTATTCATTTACGAAGTATTGAAGTAAGATTAGCAAAATTCATGTGCACTAATTGTTTTAATCGGCCCAAAATGCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

108

Amino Acids

12.47

Weight (kDa)

9.3

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	140, 263
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw21I	GWGCWC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	2 cut(s)	33, 167
BmgT120I	GGNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	164
BssMI	GATC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	306
CviAII	CATG	4 cut(s)	206, 224, 283, 317
CviJI	RGCY	4 cut(s)	55, 91, 143, 307
CviKI_1	RGCY	4 cut(s)	55, 91, 143, 307
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	318
FaeI	CATG	4 cut(s)	209, 227, 286, 320
FaiI	YATR	8 cut(s)	80, 134, 186, 195, 207, 225, 284, 318
FatI	CATG	4 cut(s)	205, 223, 282, 316
HaeIII	GGCC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	209, 227, 286, 320
HinfI	GANTC	2 cut(s)	177, 227
Hpy166II	GTNNAC	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	10, 150
HpyCH4V	TGCA	3 cut(s)	223, 288, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
Hsp92II	CATG	4 cut(s)	209, 227, 286, 320
Kzo9I	GATC	1 cut(s)	187
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	55, 106, 140
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	4 cut(s)	135, 181, 278, 292
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	4, 14, 42, 45
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	1 cut(s)	300
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	209, 227, 286, 320
NmuCI	GTSAC	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	2 cut(s)	25, 145
SfaNI	GCATC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	135, 181, 278, 292
TasI	AATT	4 cut(s)	135, 181, 278, 292
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	113, 141, 236, 271
TspGWI	ACGGA	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.