Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

930176 .. 936350

Gene Structure 6175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG012200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

ATGGCCACCAAGCGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCTGAAGCAGGGGGAGAAAGATGTCTTATTGCCGGAGAGTAGTGAAATCGAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGTGGTGGTGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGCGCCGAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGAGAGCGGTGGTTCTGAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTGCGCCTCCGACTCAGAAGAAGGCAAACAACTCCAACGATGATGAAGATTTTCTTGAGGGTCGTCGACACTTCACAAAGGCAGAGGTCGATGGATGTATCTATGATCTTTATGATGATGCACATGTAAAAGCCGGCAAAGGAGAACAACCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTTGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTTCTTGGGAAACTGGATATTGCGAGATTCGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCAGCAAACTTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACTTGATGGTTCAGAAACACCGTTTAGTGTATTCACAACAAAAGATGCCAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGATTTACTAACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTGTGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGCTGATGGAAAATGTAGTGGATCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGTATGCTTTGGGGAGGTTAGTTGGAATGAACTACCAAGCAAGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGGGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGTCAGATTCCTACTAAATGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCCGAGGTTGGAAACAATGAAAACCGTGACGTAATGCCTTATGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTGGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTATGATCACCGCCCTCTGAAATTGAATGATGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTCCCTGATTATGCAATGTCATTTGTGAAAGGACATTCATCAAAACCTTTTGGACGTTTATGGTGGGATGAGATTGTTTCCACAGTTGTTACCCGGGCGGAGCCACATAATCAGGCAATTTTGCATCCTCAACAAGATCGGGTATTGACAGTTCGTGAAAATGCAAGACTACAAGGATTTCCTGACTACTACCAGCTTTCTGGTCCAATCAAAGAGAGATATATGCAAATTGGAAATGCCGTAGCTGTTCCTGTTTCACGTGCACTGGGTTACACATTAGGTTTGGCATATAAGGGTTCTGCTGGTGAGGATTCTTTGTTTGAGCTGCCCAAAGAAATGCATTTGCCTAACGGATGTTTTGAAGATGGAGATTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

916

Amino Acids

102.7

Weight (kDa)

5.12

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	197 - 265	1.9e-07	BAH domain
Chromo	PF00385	460 - 515	2.7e-14	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	524 - 882	2.1e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1835
Acc16I	TGCGCA	1 cut(s)	1843
Acc36I	ACCTGC	1 cut(s)	1835
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	5 cut(s)	517, 1073, 1402, 1551, 1858
AccII	CGCG	1 cut(s)	50
AclWI	GGATC	5 cut(s)	166, 1143, 1758, 2321, 2334
AcoI	YGGCCR	2 cut(s)	3, 243
AcsI	RAATTY	3 cut(s)	1535, 1760, 2129
AcuI	CTGAAG	3 cut(s)	80, 1184, 1392
AcvI	CACGTG	1 cut(s)	2630
AfaI	GTAC	5 cut(s)	225, 235, 311, 847, 1041
AfiI	CCNNNNNNNGG	4 cut(s)	1577, 1616, 1876, 2066
AflIII	ACRYGT	2 cut(s)	574, 2239
AjnI	CCWGG	2 cut(s)	1576, 2287
AjuI	GAANNNNNNNTTGG	6 cut(s)	756, 788, 1380, 1412, 1667, 1699
AleI	CACNNNNGTG	1 cut(s)	1010
AloI	GAACNNNNNNTCC	2 cut(s)	1233, 1265
AluBI	AGCT	8 cut(s)	58, 843, 966, 1475, 2029, 2566, 2615, 2695
AluI	AGCT	8 cut(s)	58, 843, 966, 1475, 2029, 2566, 2615, 2695
Alw21I	GWGCWC	1 cut(s)	2635
Alw44I	GTGCAC	1 cut(s)	2631
AlwI	GGATC	5 cut(s)	166, 1143, 1758, 2321, 2334
AlwNI	CAGNNNCTG	1 cut(s)	1370
Ama87I	CYCGRG	2 cut(s)	2060, 2463
AoxI	GGCC	6 cut(s)	3, 243, 437, 1078, 1893, 2002
ApaI	GGGCCC	1 cut(s)	1897
ApaLI	GTGCAC	1 cut(s)	2631
ApeKI	GCWGC	2 cut(s)	452, 2695
ApoI	RAATTY	3 cut(s)	1535, 1760, 2129
Asp700I	GAANNNNTTC	2 cut(s)	501, 768
AspLEI	GCGC	4 cut(s)	15, 295, 457, 1844
AspS9I	GGNCC	6 cut(s)	438, 1604, 1893, 1894, 2371, 2573
AsuC2I	CCSGG	2 cut(s)	2464, 2465
AsuHPI	GGTGA	5 cut(s)	388, 413, 1592, 2195, 2687
AvaI	CYCGRG	2 cut(s)	2060, 2463
AvaII	GGWCC	3 cut(s)	1604, 2371, 2573
AxyI	CCTNAGG	1 cut(s)	2256
BaeGI	GKGCMC	2 cut(s)	1897, 2635
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2326
BanII	GRGCYC	2 cut(s)	1497, 1897
BarI	GAAGNNNNNNTAC	4 cut(s)	207, 239, 1023, 1055
BauI	CACGAG	1 cut(s)	972
BbrPI	CACGTG	1 cut(s)	2630
BbsI	GAAGAC	2 cut(s)	761, 1684
Bbv12I	GWGCWC	1 cut(s)	2635
BbvI	GCAGC	2 cut(s)	439, 2682
BccI	CCATC	9 cut(s)	429, 536, 635, 1119, 1268, 1729, 1763, 1822, 2729
BceAI	ACGGC	4 cut(s)	138, 258, 288, 2594
BciT130I	CCWGG	2 cut(s)	1578, 2289
BclI	TGATCA	3 cut(s)	2008, 2200, 2230
BcnI	CCSGG	2 cut(s)	2464, 2465
BfaI	CTAG	2 cut(s)	390, 1499
BfmI	CTRYAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	1835
BglII	AGATCT	1 cut(s)	2053
BisI	GCNGC	3 cut(s)	48, 453, 2696
BlpI	GCTNAGC	1 cut(s)	2141
BlsI	GCNGC	3 cut(s)	49, 454, 2697
Bme1390I	CCNGG	4 cut(s)	1578, 2289, 2464, 2465
Bme18I	GGWCC	3 cut(s)	1604, 2371, 2573
BmeT110I	CYCGRG	2 cut(s)	2060, 2463
BmgT120I	GGNCC	6 cut(s)	438, 1604, 1893, 1894, 2371, 2573
BmiI	GGNNCC	8 cut(s)	189, 440, 1494, 1894, 1895, 2328, 2373, 2472
BmrFI	CCNGG	4 cut(s)	1578, 2289, 2464, 2465
BmrI	ACTGGG	1 cut(s)	2645
BmsI	GCATC	7 cut(s)	179, 559, 1303, 1351, 2032, 2181, 2503
BmuI	ACTGGG	1 cut(s)	2645
BpiI	GAAGAC	2 cut(s)	761, 1684
BplI	GAGNNNNNCTC	2 cut(s)	1900, 1932
BpmI	CTGGAG	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	2141
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	2464, 2465
BsaAI	YACGTR	1 cut(s)	2630
BsaBI	GATNNNNATC	2 cut(s)	163, 2229
BsaJI	CCNNGG	5 cut(s)	1087, 1615, 2061, 2288, 2463
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	3 cut(s)	203, 233, 2730
Bsc4I	CCNNNNNNNGG	4 cut(s)	1577, 1616, 1876, 2066
Bse118I	RCCGGY	3 cut(s)	190, 406, 584
Bse1I	ACTGG	6 cut(s)	231, 786, 948, 1081, 1555, 2640
Bse21I	CCTNAGG	1 cut(s)	2256
Bse3DI	GCAATG	2 cut(s)	1220, 2391
Bse8I	GATNNNNATC	2 cut(s)	163, 2229
BseBI	CCWGG	2 cut(s)	1578, 2289
BseDI	CCNNGG	5 cut(s)	1087, 1615, 2061, 2288, 2463
BseJI	GATNNNNATC	2 cut(s)	163, 2229
BseLI	CCNNNNNNNGG	4 cut(s)	1577, 1616, 1876, 2066
BseMI	GCAATG	2 cut(s)	1220, 2391
BseNI	ACTGG	6 cut(s)	231, 786, 948, 1081, 1555, 2640
BseRI	GAGGAG	3 cut(s)	434, 1343, 1535
BseSI	GKGCMC	2 cut(s)	1897, 2635
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	439, 2682
BsgI	GTGCAG	1 cut(s)	935
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	6 cut(s)	5, 245, 439, 1080, 1895, 2004
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	2635
BsiHKCI	CYCGRG	2 cut(s)	2060, 2463
BsiSI	CCGG	8 cut(s)	32, 89, 191, 407, 416, 430, 585, 2464
BslFI	GGGAC	4 cut(s)	1254, 2176, 2237, 2357
BslI	CCNNNNNNNGG	4 cut(s)	1577, 1616, 1876, 2066
BsmFI	GGGAC	4 cut(s)	1254, 2176, 2237, 2357
BsnI	GGCC	6 cut(s)	5, 245, 439, 1080, 1895, 2004
BsoBI	CYCGRG	2 cut(s)	2060, 2463
Bsp120I	GGGCCC	1 cut(s)	1893
Bsp1286I	GDGCHC	3 cut(s)	1497, 1897, 2635
Bsp1720I	GCTNAGC	1 cut(s)	2141
BspANI	GGCC	6 cut(s)	5, 245, 439, 1080, 1895, 2004
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	2233
BspLI	GGNNCC	8 cut(s)	189, 440, 1494, 1894, 1895, 2328, 2373, 2472
BspMI	ACCTGC	1 cut(s)	1835
BspPI	GGATC	5 cut(s)	166, 1143, 1758, 2321, 2334
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	1220, 2391
BsrFI	RCCGGY	3 cut(s)	190, 406, 584
BsrI	ACTGG	6 cut(s)	231, 786, 948, 1081, 1555, 2640
BssAI	RCCGGY	3 cut(s)	190, 406, 584
BssECI	CCNNGG	5 cut(s)	1087, 1615, 2061, 2288, 2463
BssNAI	GTATAC	2 cut(s)	1403, 1552
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	2 cut(s)	1087, 1615
Bst1107I	GTATAC	2 cut(s)	1403, 1552
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	2 cut(s)	1578, 2289
Bst6I	CTCTTC	3 cut(s)	210, 1320, 1425
BstBAI	YACGTR	1 cut(s)	2630
BstC8I	GCNNGC	4 cut(s)	192, 427, 586, 918
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	4 cut(s)	15, 295, 457, 1844
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 1100
BstNI	CCWGG	2 cut(s)	1578, 2289
BstNSI	RCATGY	2 cut(s)	578, 1151
BstSCI	CCNGG	4 cut(s)	1576, 2287, 2462, 2463
BstSFI	CTRYAG	1 cut(s)	673
BstSLI	GKGCMC	2 cut(s)	1897, 2635
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	439, 2682
BstV2I	GAAGAC	2 cut(s)	761, 1684
BstX2I	RGATCY	5 cut(s)	158, 1135, 1750, 2053, 2326
BstXI	CCANNNNNNTGG	2 cut(s)	1012, 2570
BstYI	RGATCY	5 cut(s)	158, 1135, 1750, 2053, 2326
BstZ17I	GTATAC	2 cut(s)	1403, 1552
BstZI	CGGCCG	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	2256
BsuRI	GGCC	6 cut(s)	5, 245, 439, 1080, 1895, 2004
BtsI	GCAGTG	1 cut(s)	1925
BtsIMutI	CAGTG	4 cut(s)	671, 955, 1925, 2633
BveI	ACCTGC	1 cut(s)	1835
Cac8I	GCNNGC	4 cut(s)	192, 427, 586, 918
CaiI	CAGNNNCTG	1 cut(s)	1370
CciI	TCATGA	1 cut(s)	2233
CfoI	GCGC	4 cut(s)	15, 295, 457, 1844
Cfr10I	RCCGGY	3 cut(s)	190, 406, 584
Cfr13I	GGNCC	6 cut(s)	438, 1604, 1893, 1894, 2371, 2573
Cfr9I	CCCGGG	1 cut(s)	2463
CsiI	ACCWGGT	1 cut(s)	1576
Csp6I	GTAC	5 cut(s)	224, 234, 310, 846, 1040
CviAII	CATG	9 cut(s)	575, 1148, 1175, 1547, 1611, 1696, 1937, 2006, 2234
CviQI	GTAC	5 cut(s)	224, 234, 310, 846, 1040
DraI	TTTAAA	1 cut(s)	1258
EaeI	YGGCCR	2 cut(s)	3, 243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	3 cut(s)	210, 1320, 1425
EarI	CTCTTC	3 cut(s)	210, 1320, 1425
EciI	GGCGGA	2 cut(s)	34, 2483
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	1087, 1615
Eco24I	GRGCYC	2 cut(s)	1497, 1897
Eco47I	GGWCC	3 cut(s)	1604, 2371, 2573
Eco52I	CGGCCG	1 cut(s)	243
Eco57I	CTGAAG	3 cut(s)	80, 1184, 1392
Eco72I	CACGTG	1 cut(s)	2630
Eco81I	CCTNAGG	1 cut(s)	2256
Eco88I	CYCGRG	2 cut(s)	2060, 2463
EcoO109I	RGGNCCY	2 cut(s)	1893, 1894
EcoRII	CCWGG	2 cut(s)	1576, 2287
EcoT14I	CCWWGG	2 cut(s)	1087, 1615
EcoT22I	ATGCAT	1 cut(s)	2712
EcoT38I	GRGCYC	2 cut(s)	1497, 1897
ErhI	CCWWGG	2 cut(s)	1087, 1615
FaeI	CATG	9 cut(s)	578, 1151, 1178, 1550, 1614, 1699, 1940, 2009, 2237
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	4 cut(s)	1254, 2176, 2237, 2357
FatI	CATG	9 cut(s)	574, 1147, 1174, 1546, 1610, 1695, 1936, 2005, 2233
FauI	CCCGC	1 cut(s)	1869
FauNDI	CATATG	1 cut(s)	1852
FbaI	TGATCA	3 cut(s)	2008, 2200, 2230
FblI	GTMKAC	5 cut(s)	517, 1073, 1402, 1551, 1858
Fnu4HI	GCNGC	3 cut(s)	48, 453, 2696
FriOI	GRGCYC	2 cut(s)	1497, 1897
Fsp4HI	GCNGC	3 cut(s)	48, 453, 2696
FspBI	CTAG	2 cut(s)	390, 1499
FspI	TGCGCA	1 cut(s)	1843
GlaI	GCGC	4 cut(s)	14, 294, 456, 1843
GluI	GCNGC	3 cut(s)	48, 453, 2696
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	6 cut(s)	5, 245, 439, 1080, 1895, 2004
HapII	CCGG	8 cut(s)	32, 89, 191, 407, 416, 430, 585, 2464
HhaI	GCGC	4 cut(s)	15, 295, 457, 1844
Hin1II	CATG	9 cut(s)	578, 1151, 1178, 1550, 1614, 1699, 1940, 2009, 2237
Hin6I	GCGC	4 cut(s)	13, 293, 455, 1842
HinP1I	GCGC	4 cut(s)	13, 293, 455, 1842
HincII	GTYRAC	3 cut(s)	518, 895, 982
HindII	GTYRAC	3 cut(s)	518, 895, 982
HindIII	AAGCTT	1 cut(s)	2027
HinfI	GANTC	9 cut(s)	218, 463, 716, 795, 1199, 1367, 1960, 2281, 2681
HpaI	GTTAAC	1 cut(s)	982
HpaII	CCGG	8 cut(s)	32, 89, 191, 407, 416, 430, 585, 2464
HphI	GGTGA	5 cut(s)	388, 413, 1592, 2195, 2687
Hpy166II	GTNNAC	8 cut(s)	518, 895, 982, 1074, 1403, 1552, 1859, 2633
Hpy188III	TCNNGA	7 cut(s)	506, 1642, 2060, 2234, 2330, 2525, 2552
Hpy8I	GTNNAC	8 cut(s)	518, 895, 982, 1074, 1403, 1552, 1859, 2633
Hpy99I	CGWCG	2 cut(s)	130, 519
HpyCH4IV	ACGT	5 cut(s)	1405, 2088, 2239, 2425, 2629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 1100
HpySE526I	ACGT	5 cut(s)	1405, 2088, 2239, 2425, 2629
Hsp92II	CATG	9 cut(s)	578, 1151, 1178, 1550, 1614, 1699, 1940, 2009, 2237
HspAI	GCGC	4 cut(s)	13, 293, 455, 1842
KroI	GCCGGC	2 cut(s)	190, 584
KroNI	GCCGGC	2 cut(s)	192, 586
Ksp22I	TGATCA	3 cut(s)	2008, 2200, 2230
KspAI	GTTAAC	1 cut(s)	982
LmnI	GCTCC	6 cut(s)	187, 1015, 1472, 1492, 1975, 2470
Lsp1109I	GCAGC	2 cut(s)	439, 2682
LweI	GCATC	7 cut(s)	179, 559, 1303, 1351, 2032, 2181, 2503
MabI	ACCWGGT	1 cut(s)	1576
MaeI	CTAG	2 cut(s)	390, 1499
MaeII	ACGT	5 cut(s)	1405, 2088, 2239, 2425, 2629
MaeIII	GTNAC	5 cut(s)	742, 1117, 2084, 2458, 2639
MbiI	CCGCTC	1 cut(s)	336
MfeI	CAATTG	1 cut(s)	1682
MflI	RGATCY	5 cut(s)	158, 1135, 1750, 2053, 2326
MhlI	GDGCHC	3 cut(s)	1497, 1897, 2635
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	227, 457
MmeI	TCCRAC	6 cut(s)	485, 510, 741, 1786, 2016, 2047
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	2712
MroNI	GCCGGC	2 cut(s)	190, 584
MroXI	GAANNNNTTC	2 cut(s)	501, 768
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	981, 1109, 1257, 1266, 1449, 2351
MslI	CAYNNNNRTG	4 cut(s)	447, 1010, 2184, 2238
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	8 cut(s)	32, 89, 191, 407, 416, 430, 585, 2464
MspR9I	CCNGG	4 cut(s)	1578, 2289, 2464, 2465
MunI	CAATTG	1 cut(s)	1682
MvaI	CCWGG	2 cut(s)	1578, 2289
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	131, 1100
NaeI	GCCGGC	2 cut(s)	192, 586
NciI	CCSGG	2 cut(s)	2464, 2465
NdeI	CATATG	1 cut(s)	1852
NgoMIV	GCCGGC	2 cut(s)	190, 584
NlaIII	CATG	9 cut(s)	578, 1151, 1178, 1550, 1614, 1699, 1940, 2009, 2237
NlaIV	GGNNCC	8 cut(s)	189, 440, 1494, 1894, 1895, 2328, 2373, 2472
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	2084
NsbI	TGCGCA	1 cut(s)	1843
NsiI	ATGCAT	1 cut(s)	2712
NspI	RCATGY	2 cut(s)	578, 1151
OliI	CACNNNNGTG	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	2233
PaqCI	CACCTGC	1 cut(s)	1835
PciI	ACATGT	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	2245
PdiI	GCCGGC	2 cut(s)	192, 586
PdmI	GAANNNNTTC	2 cut(s)	501, 768
PfeI	GAWTC	7 cut(s)	716, 795, 1199, 1367, 1960, 2281, 2681
PflMI	CCANNNNNTGG	1 cut(s)	1577
PkrI	GCNGC	3 cut(s)	49, 454, 2697
PleI	GAGTC	2 cut(s)	226, 457
PmaCI	CACGTG	1 cut(s)	2630
PmlI	CACGTG	1 cut(s)	2630
PpsI	GAGTC	2 cut(s)	226, 457
Ppu21I	YACGTR	1 cut(s)	2630
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	1576, 2287
PspCI	CACGTG	1 cut(s)	2630
PspGI	CCWGG	2 cut(s)	1576, 2287
PspN4I	GGNNCC	8 cut(s)	189, 440, 1494, 1894, 1895, 2328, 2373, 2472
PspOMI	GGGCCC	1 cut(s)	1893
PspPI	GGNCC	6 cut(s)	438, 1604, 1893, 1894, 2371, 2573
PsrI	GAACNNNNNNTAC	2 cut(s)	2505, 2537
PstNI	CAGNNNCTG	1 cut(s)	1370
PsuI	RGATCY	5 cut(s)	158, 1135, 1750, 2053, 2326
RsaI	GTAC	5 cut(s)	225, 235, 311, 847, 1041
RsaNI	GTAC	5 cut(s)	224, 234, 310, 846, 1040
RseI	CAYNNNNRTG	4 cut(s)	447, 1010, 2184, 2238
SalI	GTCGAC	1 cut(s)	516
SaqAI	TTAA	6 cut(s)	981, 1109, 1257, 1266, 1449, 2351
SatI	GCNGC	3 cut(s)	48, 453, 2696
Sau96I	GGNCC	6 cut(s)	438, 1604, 1893, 1894, 2371, 2573
SchI	GAGTC	2 cut(s)	227, 457
ScrFI	CCNGG	4 cut(s)	1578, 2289, 2464, 2465
SduI	GDGCHC	3 cut(s)	1497, 1897, 2635
SexAI	ACCWGGT	1 cut(s)	1576
SfaNI	GCATC	7 cut(s)	179, 559, 1303, 1351, 2032, 2181, 2503
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	3 cut(s)	1604, 2371, 2573
SmaI	CCCGGG	1 cut(s)	2465
SmiMI	CAYNNNNRTG	4 cut(s)	447, 1010, 2184, 2238
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SspMI	CTAG	2 cut(s)	390, 1499
StyD4I	CCNGG	4 cut(s)	1576, 2287, 2462, 2463
StyI	CCWWGG	2 cut(s)	1087, 1615
TaiI	ACGT	5 cut(s)	1408, 2091, 2242, 2428, 2632
TaqI	TCGA	5 cut(s)	20, 105, 302, 517, 540
TatI	WGTACW	2 cut(s)	309, 1039
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	7 cut(s)	716, 795, 1199, 1367, 1960, 2281, 2681
Tru1I	TTAA	6 cut(s)	981, 1109, 1257, 1266, 1449, 2351
Tru9I	TTAA	6 cut(s)	981, 1109, 1257, 1266, 1449, 2351
TscAI	CASTG	4 cut(s)	671, 955, 1932, 2640
TseFI	GTSAC	1 cut(s)	2084
TseI	GCWGC	2 cut(s)	452, 2695
Tsp45I	GTSAC	1 cut(s)	2084
TspGWI	ACGGA	2 cut(s)	1859, 2736
TspMI	CCCGGG	1 cut(s)	2463
TspRI	CASTG	4 cut(s)	671, 955, 1932, 2640
Van91I	CCANNNNNTGG	1 cut(s)	1577
VneI	GTGCAC	1 cut(s)	2631
VpaK11BI	GGWCC	3 cut(s)	1604, 2371, 2573
XapI	RAATTY	3 cut(s)	1535, 1760, 2129
XceI	RCATGY	2 cut(s)	578, 1151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1622
XmaI	CCCGGG	1 cut(s)	2463
XmiI	GTMKAC	5 cut(s)	517, 1073, 1402, 1551, 1858
XmnI	GAANNNNTTC	2 cut(s)	501, 768
XspI	CTAG	2 cut(s)	390, 1499
Zsp2I	ATGCAT	1 cut(s)	2712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.