Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

62584147 .. 62591562

Gene Structure 7416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG416500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGTGACGCCGCGGAAGAAGAACCCTAAGGCGTCTCCGAAATCGAAGAAGACAACCAATCCAGAGCGAGCTTCACCGGAGGTACCTGCTTCTTCCACGGTCGTTGACGGCAGAGAGATGAATCCATCGGCGAGGAAGAACAAGTCCAATGCGCCTCCCGCCTCGGCTCCGGAACCTAAGAAGTCGAAGAGAACCAAGCCGAAGGCAGGTCCTTGTTCCATTGTCGTCGACGGCCCGGAGCCTACGTTCGTCGGCGAACCTCTTACCGACAAGGAGGCTCGGCGGAGATGGCCCGAATCGTACCGAAAGGAGAAGCAAGTTGCTGGACCAATCAGCTCTAAAGGAGATGAAGATTCTCTTCAGGCTCGTTCTCACTTTACAATGGCTGAAGTGGATGGAATAAGATATGATCTATATGATGATGCTCATGTTCTGGCTGGAGAAGGAGAGCCACCATACATTTGCAAGATAGTTGAGATGTTTGAGGCAGTTGATGGGCAGTTATATTTTACAGCTCAATGGTACTACCGAGTACAAGACACTGTCGTCAAAGACTGTGTTGAGATTGATAGTAGACGCGTTTTCTTCTCAGATGTGAAGGACCACAATCCTTTGGAATGTCTTCTTGAAAAGATTACTATTGTTAGATTGGCTCTAAATGTTGATCCTGATGTTAAGAACAAACTTATTCAAGAGTGCAAGTATTATTGTGACACCAAATACTTGTTGCCTCATTCAACTTTTGTCAATTTACTACCAGAAAATATGCAATCAGGAAGTCATATTCCATCAACAATTTCTTGTGGGGTTGTTGGTGAATCTTGTCATGTTATCTCAGAACTTACGAAAAGCACCATAGTCAGGGAGCAATGCTTACAAGAACTTAAATTGCTGGACTTATATGCTGGGTGTGGTGGGATGTCAACTGGCCTATGTTTGGGTGCCCGATTATCCAACGTAAATCTTGTCACGAGATGGGCTGTTGATATAAATGAATATGCACTCAAAAGTCTAAAGCTTAATCATCCAGAAACTGAGGTTAGAAAGGAATATGCGGAAAACTTTCTGATTTTGCTCAAGAAGTGGAAGGGACTATGCATTTCTTTTAACTTGGTTGAGGGCGACAATTCAGAGATACCGGTCAATTTCTTTGCAACAAATGACCCTTCAGATGAAGAAGAGGATGACAACCAGAATAAGGATAATGCTGAAGATTCTGAGGTTTATGAAGTCGAAAAAATACTTGATATATGTTATGGGGAACCAGAAGAGAAAGATAGGGGGCTGTACTTCAAGGTTCATTGGAAGGGCTATGGTTCAGATGAAGATACTTGGGAGCCTATTGAGTCACTGAGGGATTGCAAGGATAGTGTACAGGAATTTGTTTCTTGTGGCTTCAGATCAAAAATGTTGCCGTTACCTGGAGATGTTGATGTGGTGTGTGGTGGACCACCTTGCCAGGGAATAAGCGGATTCAACCGATTTAGGGACAAGGAAAATCCTTTGAATGATAAGAAAAATGAACAGGTGGTTGTTTTCATGGACATAGTTCAGTACCTTAAGCCTAAGTATGTCTTGATGGAAAATGTGGTCGACCTTTTGAAATTTGCGGAAGGATTCCTTGGGCGATATGCCATTGGACGTCTTGTTGATATGAACTATCAGGCAAGGATTGGTATGATGTGTGCAGGAGCATATGGTCTTCCTCAATTCCGTATGCGGGTTTTTCTATGGGGGGCCTGTCCTACTGAGCGGTTGCCGCAATACCCACTTCCTACCCATGATGTTGTTGTCAAGGGTCATACTCCAACTGAATGGGAGGAGAATGCAGTTTGTAGTGAAGGGCATCAATCTACATTGAAAGAAAAGCTCTTTTTGGAGGATGCTCTATCTGACCTTCCTGCTGTAAATAATAATGAGTGTCGTGATGAGATGCCATATGGAAGTCCCCCCCAGACTGAGTTCCAGAAGATGATTAGACTTAGCAGAAACTATTTATTGGGATCTTCAAAGAGTGAGCCTTATAATGTGATGATATATGATCACCAGCCTTTGACAGTGAATGCTGACGATTATGCTCGTATATGTCGCATTCCCAAAGAGAAGGTTCCTTACTTCATCTCTAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

710

Amino Acids

80.33

Weight (kDa)

5.3

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	148 - 241	1.1e-10	BAH domain
Chromo	PF00385	409 - 462	2.2e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	473 - 599	2.6e-17	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2025
AasI	GACNNNNNNGTC	1 cut(s)	545
AatII	GACGTC	1 cut(s)	1645
Acc36I	ACCTGC	2 cut(s)	94, 197
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	2 cut(s)	82, 941
AccBSI	CCGCTC	1 cut(s)	1753
AccI	GTMKAC	3 cut(s)	228, 574, 1593
AccII	CGCG	2 cut(s)	13, 579
AccIII	TCCGGA	1 cut(s)	169
AclWI	GGATC	2 cut(s)	659, 2011
AcsI	RAATTY	2 cut(s)	1379, 1604
AcuI	CTGAAG	5 cut(s)	344, 408, 1152, 1230, 1381
AcyI	GRCGYC	3 cut(s)	8, 32, 1642
AfaI	GTAC	7 cut(s)	84, 302, 524, 534, 1289, 1374, 1556
AfiI	CCNNNNNNNGG	8 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	1138
AgsI	TTSAA	9 cut(s)	629, 692, 738, 1294, 1477, 1507, 1603, 1861, 2010
AjnI	CCWGG	2 cut(s)	1420, 1458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1605, 1637
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	71, 336, 515, 1018, 1870
AluI	AGCT	5 cut(s)	71, 336, 515, 1018, 1870
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	659, 2011
AlwNI	CAGNNNCTG	1 cut(s)	1034
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	232, 290, 928, 1737
ApoI	RAATTY	2 cut(s)	1379, 1604
AsiGI	ACCGGT	1 cut(s)	1138
Asp700I	GAANNNNTTC	2 cut(s)	621, 1062
Asp718I	GGTACC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	7 cut(s)	209, 233, 291, 326, 601, 1448, 1737
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	16, 66, 827, 2036
AvaII	GGWCC	4 cut(s)	209, 326, 601, 1448
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	946
BanI	GGYRCC	2 cut(s)	82, 941
BarI	GAAGNNNNNNTAC	2 cut(s)	2096, 2128
BauI	CACGAG	1 cut(s)	970
BbsI	GAAGAC	3 cut(s)	56, 614, 1694
BccI	CCATC	7 cut(s)	133, 282, 389, 488, 796, 969, 1573
BceAI	ACGGC	3 cut(s)	124, 247, 1399
BciT130I	CCWGG	2 cut(s)	1422, 1460
BclI	TGATCA	1 cut(s)	2041
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	1559
BfuAI	ACCTGC	2 cut(s)	94, 197
BisI	GCNGC	2 cut(s)	11, 1760
BlsI	GCNGC	2 cut(s)	12, 1761
Bme1390I	CCNGG	3 cut(s)	236, 1422, 1460
Bme18I	GGWCC	4 cut(s)	209, 326, 601, 1448
BmgT120I	GGNCC	7 cut(s)	209, 233, 291, 326, 601, 1448, 1737
BmiI	GGNNCC	9 cut(s)	84, 168, 174, 240, 943, 1263, 1338, 1738, 2109
BmrFI	CCNGG	3 cut(s)	236, 1422, 1460
BmsI	GCATC	4 cut(s)	412, 1855, 1873, 1923
BpiI	GAAGAC	3 cut(s)	56, 614, 1694
BpmI	CTGGAG	2 cut(s)	459, 1443
BpuEI	CTTGAG	1 cut(s)	1061
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	3 cut(s)	8, 32, 1642
BsaJI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BsaWI	WCCGGW	3 cut(s)	76, 169, 1138
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	8 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720
Bse118I	RCCGGY	1 cut(s)	1138
Bse1I	ACTGG	1 cut(s)	931
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	875
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	1422, 1460
BseDI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BseGI	GGATG	5 cut(s)	400, 924, 1024, 1189, 1888
BseLI	CCNNNNNNNGG	8 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	7 cut(s)	603, 849, 1026, 1209, 1343, 1740, 1950
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	1 cut(s)	1835
BseSI	GKGCMC	1 cut(s)	946
BseYI	CCCAGC	1 cut(s)	905
BsgI	GTGCAG	1 cut(s)	1707
Bsh1236I	CGCG	2 cut(s)	13, 579
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	234, 292, 930, 1739
BshNI	GGYRCC	2 cut(s)	82, 941
BshTI	ACCGGT	1 cut(s)	1138
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	77, 170, 236, 1139
BslFI	GGGAC	3 cut(s)	1104, 1502, 1932
BslI	CCNNNNNNNGG	8 cut(s)	206, 861, 937, 1198, 1421, 1460, 1486, 1720
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	1104, 1502, 1932
BsmI	GAATGC	3 cut(s)	1831, 2068, 2091
BsnI	GGCC	4 cut(s)	234, 292, 930, 1739
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp13I	TCCGGA	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	1372
Bsp143I	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
BspANI	GGCC	4 cut(s)	234, 292, 930, 1739
BspCNI	CTCAG	7 cut(s)	602, 848, 1027, 1210, 1344, 1741, 1951
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	13, 579
BspLI	GGNNCC	9 cut(s)	84, 168, 174, 240, 943, 1263, 1338, 1738, 2109
BspMI	ACCTGC	2 cut(s)	94, 197
BspPI	GGATC	2 cut(s)	659, 2011
BspT107I	GGYRCC	2 cut(s)	82, 941
BspTI	CTTAAG	1 cut(s)	1559
BsrBI	CCGCTC	1 cut(s)	1753
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	1138
BsrGI	TGTACA	1 cut(s)	1372
BsrI	ACTGG	1 cut(s)	931
BssAI	RCCGGY	1 cut(s)	1138
BssECI	CCNNGG	5 cut(s)	11, 96, 162, 1459, 1621
BssMI	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
BssNI	GRCGYC	3 cut(s)	8, 32, 1642
BssSI	CACGAG	1 cut(s)	970
BssT1I	CCWWGG	1 cut(s)	1621
Bst2BI	CACGAG	1 cut(s)	970
Bst2UI	CCWGG	2 cut(s)	1422, 1460
Bst4CI	ACNGT	4 cut(s)	100, 544, 557, 2059
Bst6I	CTCTTC	4 cut(s)	182, 363, 1173, 1263
BstACI	GRCGYC	3 cut(s)	8, 32, 1642
BstAFI	CTTAAG	1 cut(s)	1559
BstAUI	TGTACA	1 cut(s)	1372
BstC8I	GCNNGC	1 cut(s)	69
BstDSI	CCRYGG	2 cut(s)	11, 96
BstF5I	GGATG	5 cut(s)	400, 924, 1024, 1189, 1888
BstFNI	CGCG	2 cut(s)	13, 579
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	412, 667, 1403, 2006, 2044
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 289, 1759
BstNI	CCWGG	2 cut(s)	1422, 1460
BstSCI	CCNGG	3 cut(s)	234, 1420, 1458
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	2 cut(s)	13, 579
BstV2I	GAAGAC	3 cut(s)	56, 614, 1694
BstX2I	RGATCY	1 cut(s)	2003
BstXI	CCANNNNNNTGG	1 cut(s)	1815
BstYI	RGATCY	1 cut(s)	2003
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	234, 292, 930, 1739
BtgI	CCRYGG	2 cut(s)	11, 96
BtsCI	GGATG	5 cut(s)	400, 924, 1024, 1189, 1888
BtsIMutI	CAGTG	3 cut(s)	540, 1349, 2064
BveI	ACCTGC	2 cut(s)	94, 197
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	1034
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr13I	GGNCC	7 cut(s)	209, 233, 291, 326, 601, 1448, 1737
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	3 cut(s)	16, 21, 585
Csp6I	GTAC	7 cut(s)	83, 301, 523, 533, 1288, 1373, 1555
CspAI	ACCGGT	1 cut(s)	1138
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	5 cut(s)	428, 827, 1540, 1781, 2130
CviQI	GTAC	7 cut(s)	83, 301, 523, 533, 1288, 1373, 1555
DpnI	GATC	5 cut(s)	411, 666, 1402, 2005, 2043
DpnII	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	4 cut(s)	182, 363, 1173, 1263
EarI	CTCTTC	4 cut(s)	182, 363, 1173, 1263
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	1621
Eco47I	GGWCC	4 cut(s)	209, 326, 601, 1448
Eco57I	CTGAAG	5 cut(s)	344, 408, 1152, 1230, 1381
Eco81I	CCTNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	209, 1737
EcoRII	CCWGG	2 cut(s)	1420, 1458
EcoT14I	CCWWGG	1 cut(s)	1621
EcoT22I	ATGCAT	1 cut(s)	1100
ErhI	CCWWGG	1 cut(s)	1621
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	5 cut(s)	431, 830, 1543, 1784, 2133
FalI	AAGNNNNNCTT	6 cut(s)	342, 374, 1559, 1591, 1605, 1637
FaqI	GGGAC	3 cut(s)	1104, 1502, 1932
FatI	CATG	5 cut(s)	427, 826, 1539, 1780, 2129
FauI	CCCGC	2 cut(s)	166, 1713
FauNDI	CATATG	2 cut(s)	1696, 1939
FbaI	TGATCA	1 cut(s)	2041
FblI	GTMKAC	3 cut(s)	228, 574, 1593
Fnu4HI	GCNGC	2 cut(s)	11, 1760
FokI	GGATG	5 cut(s)	407, 931, 1011, 1196, 1895
Fsp4HI	GCNGC	2 cut(s)	11, 1760
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	11, 1760
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	2 cut(s)	459, 1443
HaeIII	GGCC	4 cut(s)	234, 292, 930, 1739
HapII	CCGG	4 cut(s)	77, 170, 236, 1139
HgaI	GACGC	3 cut(s)	16, 21, 585
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	3 cut(s)	8, 32, 1642
Hin1II	CATG	5 cut(s)	431, 830, 1543, 1784, 2133
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	4 cut(s)	106, 229, 924, 1594
HindII	GTYRAC	4 cut(s)	106, 229, 924, 1594
HindIII	AAGCTT	1 cut(s)	1016
HinfI	GANTC	8 cut(s)	121, 296, 353, 818, 1214, 1346, 1473, 1617
HpaII	CCGG	4 cut(s)	77, 170, 236, 1139
HphI	GGTGA	4 cut(s)	16, 66, 827, 2036
Hpy166II	GTNNAC	7 cut(s)	106, 229, 575, 924, 1373, 1448, 1594
Hpy8I	GTNNAC	7 cut(s)	106, 229, 575, 924, 1373, 1448, 1594
Hpy99I	CGWCG	3 cut(s)	230, 233, 254
HpyCH4III	ACNGT	4 cut(s)	100, 544, 557, 2059
HpyCH4IV	ACGT	3 cut(s)	245, 957, 1642
HpyCH4V	TGCA	9 cut(s)	465, 699, 769, 1001, 1098, 1154, 1362, 1688, 1829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 289, 1759
HpySE526I	ACGT	3 cut(s)	245, 957, 1642
Hsp92I	GRCGYC	3 cut(s)	8, 32, 1642
Hsp92II	CATG	5 cut(s)	431, 830, 1543, 1784, 2133
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	2041
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
LmnI	GCTCC	5 cut(s)	172, 238, 865, 1336, 1691
LweI	GCATC	4 cut(s)	412, 1855, 1873, 1923
MaeII	ACGT	3 cut(s)	245, 957, 1642
MaeIII	GTNAC	5 cut(s)	4, 710, 967, 1347, 1416
MalI	GATC	5 cut(s)	411, 666, 1402, 2005, 2043
MbiI	CCGCTC	1 cut(s)	1753
MboI	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
MflI	RGATCY	1 cut(s)	2003
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	8 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709
MluI	ACGCGT	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	1355
MmeI	TCCRAC	2 cut(s)	978, 1832
Mph1103I	ATGCAT	1 cut(s)	1100
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	2 cut(s)	621, 1062
MseI	TTAA	5 cut(s)	675, 885, 1020, 1107, 1560
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	4 cut(s)	77, 170, 236, 1139
MspR9I	CCNGG	3 cut(s)	236, 1422, 1460
Mva1269I	GAATGC	3 cut(s)	1831, 2068, 2091
MvaI	CCWGG	2 cut(s)	1422, 1460
MvnI	CGCG	2 cut(s)	13, 579
MwoI	GCNNNNNNNGC	3 cut(s)	158, 289, 1759
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	2 cut(s)	1696, 1939
NdeII	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
NlaIII	CATG	5 cut(s)	431, 830, 1543, 1784, 2133
NlaIV	GGNNCC	9 cut(s)	84, 168, 174, 240, 943, 1263, 1338, 1738, 2109
NmeAIII	GCCGAG	2 cut(s)	143, 259
NmuCI	GTSAC	4 cut(s)	4, 710, 967, 1347
NsiI	ATGCAT	1 cut(s)	1100
PctI	GAATGC	3 cut(s)	1831, 2068, 2091
PdmI	GAANNNNTTC	2 cut(s)	621, 1062
PfeI	GAWTC	7 cut(s)	121, 296, 353, 818, 1214, 1473, 1617
PflFI	GACNNNGTC	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	1138
PkrI	GCNGC	2 cut(s)	12, 1761
PleI	GAGTC	1 cut(s)	1354
PpsI	GAGTC	1 cut(s)	1354
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	2025
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	1420, 1458
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	2 cut(s)	1420, 1458
PspN4I	GGNNCC	9 cut(s)	84, 168, 174, 240, 943, 1263, 1338, 1738, 2109
PspPI	GGNCC	7 cut(s)	209, 233, 291, 326, 601, 1448, 1737
PspPPI	RGGWCCY	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	2003
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	7 cut(s)	84, 302, 524, 534, 1289, 1374, 1556
RsaNI	GTAC	7 cut(s)	83, 301, 523, 533, 1288, 1373, 1555
SacII	CCGCGG	1 cut(s)	14
SalI	GTCGAC	2 cut(s)	227, 1592
SaqAI	TTAA	5 cut(s)	675, 885, 1020, 1107, 1560
SatI	GCNGC	2 cut(s)	11, 1760
Sau3AI	GATC	5 cut(s)	409, 664, 1400, 2003, 2041
Sau96I	GGNCC	7 cut(s)	209, 233, 291, 326, 601, 1448, 1737
SchI	GAGTC	1 cut(s)	1355
ScrFI	CCNGG	3 cut(s)	236, 1422, 1460
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	4 cut(s)	412, 1855, 1873, 1923
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	4 cut(s)	209, 326, 601, 1448
SmlI	CTYRAG	2 cut(s)	1076, 1559
SmoI	CTYRAG	2 cut(s)	1076, 1559
Sse9I	AATT	8 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709
StyD4I	CCNGG	3 cut(s)	234, 1420, 1458
StyI	CCWWGG	1 cut(s)	1621
TaaI	ACNGT	4 cut(s)	100, 544, 557, 2059
TaiI	ACGT	3 cut(s)	248, 960, 1645
TaqI	TCGA	5 cut(s)	44, 185, 228, 1233, 1593
TasI	AATT	8 cut(s)	748, 795, 887, 1126, 1144, 1379, 1604, 1709
TatI	WGTACW	3 cut(s)	532, 1287, 1372
TauI	GCSGC	2 cut(s)	13, 1762
TfiI	GAWTC	7 cut(s)	121, 296, 353, 818, 1214, 1473, 1617
Tru1I	TTAA	5 cut(s)	675, 885, 1020, 1107, 1560
Tru9I	TTAA	5 cut(s)	675, 885, 1020, 1107, 1560
TscAI	CASTG	3 cut(s)	547, 1356, 2064
TseFI	GTSAC	4 cut(s)	4, 710, 967, 1347
Tsp45I	GTSAC	4 cut(s)	4, 710, 967, 1347
TspGWI	ACGGA	1 cut(s)	1703
TspRI	CASTG	3 cut(s)	547, 1356, 2064
Tth111I	GACNNNGTC	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	4 cut(s)	209, 326, 601, 1448
XapI	RAATTY	2 cut(s)	1379, 1604
XmiI	GTMKAC	3 cut(s)	228, 574, 1593
XmnI	GAANNNNTTC	2 cut(s)	621, 1062
ZraI	GACGTC	1 cut(s)	1643
Zsp2I	ATGCAT	1 cut(s)	1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.