Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

924178 .. 930127

Gene Structure 5950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGCCACCAAGCGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCTGAAGCAGGGGGAGAAAGATGTCTTTTTGCCGGAGAGTAGTGAAATCGAAACCGAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGTGCCCAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGGGAGCGGTGGTTCTCAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTACTCCTCGGACTCAGAAGAAGGCAAACAACTCCAACGATGATGAAGATTTTCTTGAGGGTCGTCGACACTTCACAAAGGCAGAGGTTGATGGATGCATCTATGATCTTTATGATGATGCACATGTAAAAGCTGGCAAAGGAGAACAACCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTCGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTCCTTGGGAAATTGGATATTGCGAGATTTGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCAGCAAACTTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACCTGATGGTTCAGAAACACCGTTCAGTGTATTCACAACAAAAGATGCCAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGATTTACTAACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTGTGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGCTGATGGAAAATGTAGTGGATCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGTATGCTTTGGGGAGGTTAGTTGGAATGAACTACCAAGCAAGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGGGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGCCAGATTCCTACTAAGTGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCTGAGGTTGGAAACAATGAAAACCGTGACATAATGCCTTATGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTAGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTTTGATCACCGCCCTCTGAAATTGAATGCTGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTAAGCAGAATATATTCGTGTGTGTGTGTGTATATATATGCAGTTCTCGAAAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

808

Amino Acids

90.77

Weight (kDa)

5.11

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	195 - 263	1.6e-07	BAH domain
Chromo	PF00385	459 - 514	2.3e-14	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	523 - 643	1.4e-16	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1832
Acc16I	TGCGCA	1 cut(s)	1840
Acc36I	ACCTGC	1 cut(s)	1832
AccB7I	CCANNNNNTGG	1 cut(s)	1574
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1855
AccII	CGCG	1 cut(s)	50
AciI	CCGC	9 cut(s)	45, 48, 174, 200, 330, 971, 1199, 1873, 2203
AclWI	GGATC	5 cut(s)	172, 1137, 1755, 2318, 2331
AcoI	YGGCCR	2 cut(s)	3, 237
AcsI	RAATTY	3 cut(s)	1532, 1757, 2126
AcuI	CTGAAG	3 cut(s)	80, 1178, 1389
AfaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
AfiI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1873, 2063
AflIII	ACRYGT	2 cut(s)	568, 2236
AgsI	TTSAA	9 cut(s)	190, 407, 714, 989, 1385, 1630, 1756, 2166, 2218
AjnI	CCWGG	2 cut(s)	1573, 2284
AjuI	GAANNNNNNNTTGG	6 cut(s)	750, 782, 1377, 1409, 1664, 1696
AleI	CACNNNNGTG	1 cut(s)	1004
AloI	GAACNNNNNNTCC	4 cut(s)	319, 351, 1227, 1259
AluBI	AGCT	6 cut(s)	58, 578, 837, 960, 1472, 2026
AluI	AGCT	6 cut(s)	58, 578, 837, 960, 1472, 2026
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	5 cut(s)	172, 1137, 1755, 2318, 2331
AlwNI	CAGNNNCTG	1 cut(s)	1367
AoxI	GGCC	7 cut(s)	3, 237, 431, 1072, 1890, 1951, 1999
ApaI	GGGCCC	1 cut(s)	1894
ApoI	RAATTY	3 cut(s)	1532, 1757, 2126
Asp700I	GAANNNNTTC	2 cut(s)	495, 2380
AspLEI	GCGC	2 cut(s)	15, 1841
AspS9I	GGNCC	5 cut(s)	432, 1601, 1890, 1891, 1951
AsuHPI	GGTGA	4 cut(s)	382, 407, 1589, 2192
AvaII	GGWCC	1 cut(s)	1601
AxyI	CCTNAGG	2 cut(s)	2058, 2253
BaeGI	GKGCMC	2 cut(s)	291, 1894
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2323
BanII	GRGCYC	2 cut(s)	1494, 1894
BarI	GAAGNNNNNNTAC	4 cut(s)	201, 233, 1017, 1049
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	1681
BccI	CCATC	8 cut(s)	423, 530, 629, 1113, 1262, 1726, 1760, 1819
BceAI	ACGGC	3 cut(s)	144, 252, 282
BciT130I	CCWGG	2 cut(s)	1575, 2286
BclI	TGATCA	3 cut(s)	2005, 2197, 2227
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	3 cut(s)	384, 1496, 2156
BfmI	CTRYAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	1832
BglII	AGATCT	1 cut(s)	2050
BisI	GCNGC	1 cut(s)	48
BlpI	GCTNAGC	1 cut(s)	2138
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	1575, 2286
Bme18I	GGWCC	1 cut(s)	1601
BmgT120I	GGNCC	5 cut(s)	432, 1601, 1890, 1891, 1951
BmiI	GGNNCC	7 cut(s)	195, 434, 1491, 1891, 1892, 1952, 2325
BmrFI	CCNGG	2 cut(s)	1575, 2286
BmsI	GCATC	8 cut(s)	185, 530, 552, 553, 1297, 1348, 2029, 2178
BpiI	GAAGAC	1 cut(s)	1681
BplI	GAGNNNNNCTC	2 cut(s)	1897, 1929
BpmI	CTGGAG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	2138
BpuEI	CTTGAG	1 cut(s)	521
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	5 cut(s)	452, 766, 1081, 1612, 2285
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 319, 349
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1873, 2063
Bse118I	RCCGGY	2 cut(s)	196, 400
Bse1I	ACTGG	4 cut(s)	225, 942, 1075, 1552
Bse21I	CCTNAGG	2 cut(s)	2058, 2253
Bse3DI	GCAATG	1 cut(s)	1214
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	1575, 2286
BseDI	CCNNGG	5 cut(s)	452, 766, 1081, 1612, 2285
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1873, 2063
BseMI	GCAATG	1 cut(s)	1214
BseNI	ACTGG	4 cut(s)	225, 942, 1075, 1552
BseRI	GAGGAG	4 cut(s)	428, 441, 1337, 1532
BseSI	GKGCMC	2 cut(s)	291, 1894
BseX3I	CGGCCG	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	7 cut(s)	5, 239, 433, 1074, 1892, 1953, 2001
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	6 cut(s)	32, 89, 197, 401, 410, 424
BslFI	GGGAC	3 cut(s)	1248, 2173, 2234
BslI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1873, 2063
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	3 cut(s)	1248, 2173, 2234
BsmI	GAATGC	1 cut(s)	2224
BsnI	GGCC	7 cut(s)	5, 239, 433, 1074, 1892, 1953, 2001
Bsp120I	GGGCCC	1 cut(s)	1890
Bsp1286I	GDGCHC	3 cut(s)	291, 1494, 1894
Bsp1720I	GCTNAGC	1 cut(s)	2138
BspACI	CCGC	9 cut(s)	45, 48, 174, 200, 330, 971, 1199, 1873, 2203
BspANI	GGCC	7 cut(s)	5, 239, 433, 1074, 1892, 1953, 2001
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	2230
BspLI	GGNNCC	7 cut(s)	195, 434, 1491, 1891, 1892, 1952, 2325
BspMI	ACCTGC	1 cut(s)	1832
BspPI	GGATC	5 cut(s)	172, 1137, 1755, 2318, 2331
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	1214
BsrFI	RCCGGY	2 cut(s)	196, 400
BsrI	ACTGG	4 cut(s)	225, 942, 1075, 1552
BssAI	RCCGGY	2 cut(s)	196, 400
BssECI	CCNNGG	5 cut(s)	452, 766, 1081, 1612, 2285
BssNAI	GTATAC	2 cut(s)	1400, 1549
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	3 cut(s)	766, 1081, 1612
Bst1107I	GTATAC	2 cut(s)	1400, 1549
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	1575, 2286
Bst6I	CTCTTC	3 cut(s)	204, 1314, 1422
BstC8I	GCNNGC	4 cut(s)	198, 421, 580, 912
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	15, 1841
BstMAI	GTCTC	1 cut(s)	767
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 1094
BstNI	CCWGG	2 cut(s)	1575, 2286
BstNSI	RCATGY	2 cut(s)	572, 1145
BstSCI	CCNGG	2 cut(s)	1573, 2284
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	2 cut(s)	291, 1894
BstUI	CGCG	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	1681
BstX2I	RGATCY	5 cut(s)	164, 1129, 1747, 2050, 2323
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	5 cut(s)	164, 1129, 1747, 2050, 2323
BstZ17I	GTATAC	2 cut(s)	1400, 1549
BstZI	CGGCCG	1 cut(s)	237
Bsu36I	CCTNAGG	2 cut(s)	2058, 2253
BsuRI	GGCC	7 cut(s)	5, 239, 433, 1074, 1892, 1953, 2001
BtsI	GCAGTG	1 cut(s)	1922
BtsIMutI	CAGTG	4 cut(s)	665, 949, 1294, 1922
BveI	ACCTGC	1 cut(s)	1832
Cac8I	GCNNGC	4 cut(s)	198, 421, 580, 912
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	1 cut(s)	2230
CfoI	GCGC	2 cut(s)	15, 1841
Cfr10I	RCCGGY	2 cut(s)	196, 400
Cfr13I	GGNCC	5 cut(s)	432, 1601, 1890, 1891, 1951
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	5 cut(s)	218, 228, 304, 840, 1034
CviAII	CATG	9 cut(s)	569, 1142, 1169, 1544, 1608, 1693, 1934, 2003, 2231
CviQI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
DraI	TTTAAA	1 cut(s)	1252
EaeI	YGGCCR	2 cut(s)	3, 237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	204, 1314, 1422
EarI	CTCTTC	3 cut(s)	204, 1314, 1422
EciI	GGCGGA	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	766, 1081, 1612
Eco24I	GRGCYC	2 cut(s)	1494, 1894
Eco47I	GGWCC	1 cut(s)	1601
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	80, 1178, 1389
Eco81I	CCTNAGG	2 cut(s)	2058, 2253
EcoO109I	RGGNCCY	2 cut(s)	1890, 1891
EcoRII	CCWGG	2 cut(s)	1573, 2284
EcoT14I	CCWWGG	3 cut(s)	766, 1081, 1612
EcoT22I	ATGCAT	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	1494, 1894
ErhI	CCWWGG	3 cut(s)	766, 1081, 1612
FaeI	CATG	9 cut(s)	572, 1145, 1172, 1547, 1611, 1696, 1937, 2006, 2234
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	3 cut(s)	1248, 2173, 2234
FatI	CATG	9 cut(s)	568, 1141, 1168, 1543, 1607, 1692, 1933, 2002, 2230
FauI	CCCGC	1 cut(s)	1866
FauNDI	CATATG	1 cut(s)	1849
FbaI	TGATCA	3 cut(s)	2005, 2197, 2227
FblI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1855
Fnu4HI	GCNGC	1 cut(s)	48
FriOI	GRGCYC	2 cut(s)	1494, 1894
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	3 cut(s)	384, 1496, 2156
FspI	TGCGCA	1 cut(s)	1840
GlaI	GCGC	2 cut(s)	14, 1840
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	7 cut(s)	5, 239, 433, 1074, 1892, 1953, 2001
HapII	CCGG	6 cut(s)	32, 89, 197, 401, 410, 424
HhaI	GCGC	2 cut(s)	15, 1841
Hin1II	CATG	9 cut(s)	572, 1145, 1172, 1547, 1611, 1696, 1937, 2006, 2234
Hin6I	GCGC	2 cut(s)	13, 1839
HinP1I	GCGC	2 cut(s)	13, 1839
HincII	GTYRAC	3 cut(s)	512, 889, 976
HindII	GTYRAC	3 cut(s)	512, 889, 976
HindIII	AAGCTT	1 cut(s)	2024
HinfI	GANTC	7 cut(s)	212, 457, 710, 1193, 1364, 1957, 2278
HpaI	GTTAAC	1 cut(s)	976
HpaII	CCGG	6 cut(s)	32, 89, 197, 401, 410, 424
HphI	GGTGA	4 cut(s)	382, 407, 1589, 2192
Hpy166II	GTNNAC	7 cut(s)	512, 889, 976, 1068, 1400, 1549, 1856
Hpy188III	TCNNGA	6 cut(s)	500, 1639, 2057, 2231, 2327, 2414
Hpy8I	GTNNAC	7 cut(s)	512, 889, 976, 1068, 1400, 1549, 1856
Hpy99I	CGWCG	2 cut(s)	136, 513
HpyCH4IV	ACGT	2 cut(s)	1402, 2236
HpyCH4V	TGCA	9 cut(s)	543, 566, 822, 910, 1361, 1847, 2042, 2176, 2408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 1094
HpySE526I	ACGT	2 cut(s)	1402, 2236
Hsp92II	CATG	9 cut(s)	572, 1145, 1172, 1547, 1611, 1696, 1937, 2006, 2234
HspAI	GCGC	2 cut(s)	13, 1839
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	3 cut(s)	2005, 2197, 2227
KspAI	GTTAAC	1 cut(s)	976
LmnI	GCTCC	6 cut(s)	193, 327, 1009, 1469, 1489, 1972
LweI	GCATC	8 cut(s)	185, 530, 552, 553, 1297, 1348, 2029, 2178
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	3 cut(s)	384, 1496, 2156
MaeII	ACGT	2 cut(s)	1402, 2236
MaeIII	GTNAC	3 cut(s)	736, 1111, 2081
MbiI	CCGCTC	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	1679
MflI	RGATCY	5 cut(s)	164, 1129, 1747, 2050, 2323
MhlI	GDGCHC	3 cut(s)	291, 1494, 1894
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	221, 451
MmeI	TCCRAC	5 cut(s)	504, 735, 1783, 2013, 2044
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	495, 2380
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2348
MslI	CAYNNNNRTG	4 cut(s)	441, 1004, 2181, 2235
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	32, 89, 197, 401, 410, 424
MspR9I	CCNGG	2 cut(s)	1575, 2286
MunI	CAATTG	1 cut(s)	1679
Mva1269I	GAATGC	1 cut(s)	2224
MvaI	CCWGG	2 cut(s)	1575, 2286
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	137, 1094
NaeI	GCCGGC	1 cut(s)	198
NdeI	CATATG	1 cut(s)	1849
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	9 cut(s)	572, 1145, 1172, 1547, 1611, 1696, 1937, 2006, 2234
NlaIV	GGNNCC	7 cut(s)	195, 434, 1491, 1891, 1892, 1952, 2325
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	2081
NsbI	TGCGCA	1 cut(s)	1840
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	2 cut(s)	572, 1145
OliI	CACNNNNGTG	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	2230
PaqCI	CACCTGC	1 cut(s)	1832
PciI	ACATGT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	2242
PctI	GAATGC	1 cut(s)	2224
PdiI	GCCGGC	1 cut(s)	198
PdmI	GAANNNNTTC	2 cut(s)	495, 2380
PfeI	GAWTC	5 cut(s)	710, 1193, 1364, 1957, 2278
PflMI	CCANNNNNTGG	1 cut(s)	1574
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	220, 451
PpsI	GAGTC	2 cut(s)	220, 451
PscI	ACATGT	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	1573, 2284
PspGI	CCWGG	2 cut(s)	1573, 2284
PspN4I	GGNNCC	7 cut(s)	195, 434, 1491, 1891, 1892, 1952, 2325
PspOMI	GGGCCC	1 cut(s)	1890
PspPI	GGNCC	5 cut(s)	432, 1601, 1890, 1891, 1951
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	5 cut(s)	164, 1129, 1747, 2050, 2323
RsaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
RsaNI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
RseI	CAYNNNNRTG	4 cut(s)	441, 1004, 2181, 2235
SalI	GTCGAC	1 cut(s)	510
SaqAI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2348
SatI	GCNGC	1 cut(s)	48
Sau96I	GGNCC	5 cut(s)	432, 1601, 1890, 1891, 1951
SchI	GAGTC	2 cut(s)	221, 451
ScrFI	CCNGG	2 cut(s)	1575, 2286
SduI	GDGCHC	3 cut(s)	291, 1494, 1894
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	8 cut(s)	185, 530, 552, 553, 1297, 1348, 2029, 2178
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	1 cut(s)	1601
SmiMI	CAYNNNNRTG	4 cut(s)	441, 1004, 2181, 2235
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SsiI	CCGC	9 cut(s)	45, 48, 174, 200, 330, 971, 1199, 1873, 2203
SspMI	CTAG	3 cut(s)	384, 1496, 2156
StyD4I	CCNGG	2 cut(s)	1573, 2284
StyI	CCWWGG	3 cut(s)	766, 1081, 1612
TaiI	ACGT	2 cut(s)	1405, 2239
TaqI	TCGA	6 cut(s)	20, 105, 296, 511, 702, 2415
TatI	WGTACW	2 cut(s)	303, 1033
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	710, 1193, 1364, 1957, 2278
Tru1I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2348
Tru9I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2348
TscAI	CASTG	4 cut(s)	665, 949, 1294, 1929
TseFI	GTSAC	1 cut(s)	2081
Tsp45I	GTSAC	1 cut(s)	2081
TspGWI	ACGGA	1 cut(s)	1856
TspRI	CASTG	4 cut(s)	665, 949, 1294, 1929
Van91I	CCANNNNNTGG	1 cut(s)	1574
VpaK11BI	GGWCC	1 cut(s)	1601
XapI	RAATTY	3 cut(s)	1532, 1757, 2126
XceI	RCATGY	2 cut(s)	572, 1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1619
XmiI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1855
XmnI	GAANNNNTTC	2 cut(s)	495, 2380
XspI	CTAG	3 cut(s)	384, 1496, 2156
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.