Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

932685 .. 939445

Gene Structure 6761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1012800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGCGTGCAAACGGAAGTCGAAGGCCGGAACTTCTTCAGGTTCTCCGCAGAAATCGAAGAACCCAAGGCAAGCCAAGAAGGCCAGAGTTGAGGAGGAGGTAGCCACGAGTGTGGAAAAAGCTACTTCTCCGCCGAAATCGAAGAAGACTAGGCAAACCAAGAAGGAGAGAGTTGAAGAGGAGGTAGCAACGAGTGTGAAAAAATGTACTTCTCCGCTGAAATCGGACAGCCAGAGGCTAACCAGGAGTGCTAGAGTTGAAGAGGAGGTAGCAACGAGTGTGGAAAAAGCTGCTTCTCCGACGAAATCGAAGAACACGAGGCAAACCAGGAAGGCGAGAGTTGAAGAGGAGGTAGCTACGAGTGTTGAAAAAGCTGCTTCTCCGCTGAAATCGAAGAAGACGAGGCAAACCAAGGAGGGAGGAGTTGAAGAGGAGGTAGCGGCGAGTGTGGAAAAATCTGCTTGTTCTCCAAAATTGAAGAAGCCGAGGCAAACAAAAAATGCTAGAGTTGAAGAGGAGGTAGTGACGAGTGTGGAAAAAGCTGCTTCTCCGACGAAATTGAAGAATCCGAGGCAAACCAATAAGGCGACAGTTGAAGAGGAGGTAGCAACGAGTGTGGAAAAAGCTGCTTCTCCGCCGAGGAAGCCAGTGACTCAGGAGGTAGCTGCGCCTGATGAAGATGGAGAGGAATCGAGGTTTATTGGGAAACCGATGGAAGATGAGGAGGCTCGTAAGCAATACCCCAAGCGATATGCGGGAGAGAAGCCACAGAGGAATGGGCAAAACAACTCCAACGATGATGAAGATATCATTCAAGCTCGTTGTCACTACACAAAGGCGTTGGTGGATGGAATCAGTTATGATCTCTATGATGATGCCCATGTGCAAGGAGAGACGAAAGAAGAACCCTACATTTGTAAGATTGTGGAAATGTTTGAGGCAATTGGTGGGCTATTATATTTTACTGCACAATGGTACTATAGATCACGAGACACTGTCATAAAGCACTGTGCTACTGTTGCTTGTGGGCGTGTATTCTTTTCAGATGTCCGAGATGACAACCCTCTGGATTGTCTTGTTGAAAAACTTCATATTGTTAGGCTGACACTAAATGTTGATGAAGATGTGAAGAGTAAATCAATTCCAGTGTGCAATTACTATTGCGACACCAAGTATTTGCTACCATATTCTACTTTTGTCAATCTGCCAACAGAAAATATGCAGTCTGGAAGTGATGACTCAACTATCTCTGTTGAGGATGATGTTTGTTTGGATAGTGAGGTTGATTCAAAGCTGTCAAATGGAGTGTGTGCCAAATCAGAAGTAAGGCTCCTGGACCTATATTCTGGTTGTGGAGCAATGTCTACTGGCCTGTGCCTTGGTGCACATTTGGCCAATGTCAATCTTGTTACAAGATGGGCTGTTGACTACAATGAACATGCTTGTAAGAGTCTAGAACAAAACCATCCAGAGACAGAGGTCCGAAATGAAGCTGCTGAAGATTTCCTCACAATGCTCAAGGAATGGAGAAAATTGTGCATGTGCTTAAAGTTGGTTGAGACTGACAATTTAGAGGAGGATGTAGAGAAGAGTATGCTTGAATTCTTTAGAAAGGAAGATGATGAAGTGGAAGATGAGGGAGAAGAAGAGGAAGAAGATGTTAGTGGAAATGAGAATGATGATTCTGAAGTTTTTGAAGTTGATTGCGTAGTAGGAGTATGTTTTGGTGACCCAAAAAAAAATGAAAAGAAGGGAATATACTTTAAGATTCATTGGAAGGGCTACGGGCCTGAGGAAGACACCTGGGAGCCAATGAATGAATTGGAGCATTGTAAGAAGGCTATCAAAGGCTTTATTACTGAAGGTTACAGATTGAAAAAATTGCCTTTACCGGGTGATGTTGATGTGGTGTGTGGGGGGCCCCCTTGCCAAGGAGTCAGTGGTTTCAACAGGTTTAGGAACACAGAAAGTCCATTAGCCGATGAGAAAAACCAACAGTTAGAGGTGTACATGGACATAGTTCGGTACCTTAAGCCAAAGTTTGTTTTGATGGAAAATGTTGTCGATATTTTAAAATTTGCCGATGGATTCCTTGGACGATATGCCTTGGGACGCCTTGTAGATATGAACTATCAAGCGAGGATGGGAATGATGGCAGCTGGTGCCTATGGGCTTCCACAGTTCCGTATGCGAGTTTTTTTGTGGGGGGCCCGTCCTACTGAGATCTTGCCCCAGTACCCTCTTCCTACGCATGATGTTATTTCAAGGGGTGTTATCCCTACACAATTTGAGGGTAATGCTGTTGCTTATGATGAAGGTCAGAAGACTCAACTAGCAAAAAGTCTTTTTCTGGAGGATGCGATTTCTGATCTGCCTGCTGTTGAAAATAATGAAGAAAGAAATGAGATGCCATATGGGGGGCCACCCAAGACAGAGTTTCAGAGGCTTATACGACTAAGCAAAGAATACCTAATGGGGACTTCAAAGGACAACTCTTTACAGAAGGTACTTTATGATCATCGCCCTTTGCAGTTGAATCCCGATGATTATGCACGTGTCTGTGAAGTTCCGAAGAGAAAGGGTGCATGCTTCAGAGATTTCCCAGGTGTTCGTGTGCGCGGTGATAACAAGGTTGAGTGGGATCCGGAAGTACCCAGGGTGTATTTGGCTTCTGGGAAACCATTGGTCCCAGATTATGCTATGAGTTTCGTGAAGGGGTCTTCATCAAAACCTTTTGCCCGCTTGTGGTGGGACGAAACTGTGCCAACAGTTGTGACAAGAGCTGAACCACATAACCAGGCAATTATGCATCCTGAGCAAGATAGGGTGCTGACAATTCGTGAGAATGCTAGGCTACAGGGCTTTCCAGATTTTTACAGGCTCAGCGGGCCTGTAAAAGAAAGGTACATGCAAGTTGGAAATGCTGTCGCTGTTCCGGTTGCGCGTGCACTGGGCTATGCATTAGGTCTTGCTCTTAGACGTTCTGCTGGTGCTGATCCCGTGTTCATATTGCCTGAAAGTTTCCCAAACATTCAGGATCAGGTTCATTCGGCGTCATCTGAAGAAGCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1025

Amino Acids

115.07

Weight (kDa)

5.45

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	294 - 390	2.9e-07	BAH domain
Chromo	PF00385	565 - 618	3.1e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	629 - 987	4.6e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2025
AccB1I	GGYRCC	2 cut(s)	2025, 2162
AccI	GTMKAC	1 cut(s)	1364
AccII	CGCG	2 cut(s)	2619, 2944
AccIII	TCCGGA	1 cut(s)	2644
AclWI	GGATC	4 cut(s)	2636, 2649, 2990, 3045
AcoI	YGGCCR	1 cut(s)	1392
AcsI	RAATTY	2 cut(s)	1601, 2075
AcuI	CTGAAG	5 cut(s)	21, 1518, 1707, 1881, 2575
AcvI	CACGTG	1 cut(s)	2555
AcyI	GRCGYC	2 cut(s)	2113, 3053
AfaI	GTAC	8 cut(s)	208, 977, 2009, 2027, 2237, 2508, 2652, 2906
AfiI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
AflII	CTTAAG	1 cut(s)	2030
AflIII	ACRYGT	1 cut(s)	2554
AjnI	CCWGG	7 cut(s)	242, 326, 1332, 1802, 2602, 2654, 2796
AleI	CACNNNNGTG	1 cut(s)	110
Alw21I	GWGCWC	2 cut(s)	1387, 2950
Alw26I	GTCTC	4 cut(s)	887, 984, 1466, 1553
Alw44I	GTGCAC	2 cut(s)	1383, 2946
AlwI	GGATC	4 cut(s)	2636, 2649, 2990, 3045
Aor13HI	TCCGGA	1 cut(s)	2644
AoxI	GGCC	9 cut(s)	24, 81, 1369, 1392, 1787, 1919, 2208, 2420, 2888
ApaI	GGGCCC	2 cut(s)	1923, 2212
ApaLI	GTGCAC	2 cut(s)	1383, 2946
ApeKI	GCWGC	7 cut(s)	290, 374, 542, 626, 665, 1493, 2156
ApoI	RAATTY	2 cut(s)	1601, 2075
Asp700I	GAANNNNTTC	2 cut(s)	34, 1086
Asp718I	GGTACC	1 cut(s)	2025
AspLEI	GCGC	3 cut(s)	670, 2619, 2944
AsuC2I	CCSGG	1 cut(s)	1893
AsuHPI	GGTGA	3 cut(s)	1739, 1907, 2633
AvaII	GGWCC	3 cut(s)	1336, 1480, 2686
AxyI	CCTNAGG	1 cut(s)	1791
BaeGI	GKGCMC	4 cut(s)	1387, 1923, 2212, 2950
BalI	TGGCCA	1 cut(s)	1394
BamHI	GGATCC	1 cut(s)	2641
BanI	GGYRCC	2 cut(s)	2025, 2162
BanII	GRGCYC	2 cut(s)	1923, 2212
BarI	GAAGNNNNNNTAC	2 cut(s)	1742, 1774
BauI	CACGAG	3 cut(s)	106, 316, 987
BbrPI	CACGTG	1 cut(s)	2555
BbsI	GAAGAC	5 cut(s)	152, 404, 1803, 2330, 2712
Bbv12I	GWGCWC	2 cut(s)	1387, 2950
BbvI	GCAGC	7 cut(s)	277, 361, 529, 613, 652, 1480, 2168
BccI	CCATC	9 cut(s)	674, 706, 842, 1410, 1473, 2044, 2078, 2137, 2146
BcgI	CGANNNNNNTGC	2 cut(s)	2531, 2565
BciT130I	CCWGG	7 cut(s)	244, 328, 1334, 1804, 2604, 2656, 2798
BclI	TGATCA	1 cut(s)	2515
BcnI	CCSGG	1 cut(s)	1893
BcoDI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BfaI	CTAG	6 cut(s)	150, 252, 504, 1454, 2333, 2850
BfmI	CTRYAG	2 cut(s)	979, 2855
BfrI	CTTAAG	1 cut(s)	2030
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	2223
BisI	GCNGC	8 cut(s)	291, 375, 441, 543, 627, 666, 1494, 2157
BlpI	GCTNAGC	1 cut(s)	2882
BlsI	GCNGC	8 cut(s)	292, 376, 442, 544, 628, 667, 1495, 2158
Bme1390I	CCNGG	8 cut(s)	244, 328, 1334, 1804, 1893, 2604, 2656, 2798
Bme18I	GGWCC	3 cut(s)	1336, 1480, 2686
BmrFI	CCNGG	8 cut(s)	244, 328, 1334, 1804, 1893, 2604, 2656, 2798
BmrI	ACTGGG	2 cut(s)	2227, 2960
BmsI	GCATC	4 cut(s)	865, 2347, 2397, 2818
BmuI	ACTGGG	2 cut(s)	2227, 2960
BoxI	GACNNNNGTC	1 cut(s)	1478
BpiI	GAAGAC	5 cut(s)	152, 404, 1803, 2330, 2712
BpmI	CTGGAG	1 cut(s)	2372
Bpu10I	CCTNAGC	1 cut(s)	2814
Bpu1102I	GCTNAGC	1 cut(s)	2882
BpuEI	CTTGAG	1 cut(s)	1502
BpuMI	CCSGG	1 cut(s)	1893
BsaAI	YACGTR	1 cut(s)	2555
BsaHI	GRCGYC	2 cut(s)	2113, 3053
BsaWI	WCCGGW	2 cut(s)	2644, 2935
Bsc4I	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
Bse1I	ACTGG	5 cut(s)	647, 1145, 1372, 2233, 2955
Bse21I	CCTNAGG	1 cut(s)	1791
Bse3DI	GCAATG	1 cut(s)	1365
BseAI	TCCGGA	1 cut(s)	2644
BseBI	CCWGG	7 cut(s)	244, 328, 1334, 1804, 2604, 2656, 2798
BseGI	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BseLI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
BseMI	GCAATG	1 cut(s)	1365
BseMII	CTCAG	5 cut(s)	668, 1782, 2211, 2805, 2896
BseNI	ACTGG	5 cut(s)	647, 1145, 1372, 2233, 2955
BseSI	GKGCMC	4 cut(s)	1387, 1923, 2212, 2950
BseXI	GCAGC	7 cut(s)	277, 361, 529, 613, 652, 1480, 2168
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	2 cut(s)	2619, 2944
BshFI	GGCC	9 cut(s)	26, 83, 1371, 1394, 1789, 1921, 2210, 2422, 2890
BshNI	GGYRCC	2 cut(s)	2025, 2162
BsiHKAI	GWGCWC	2 cut(s)	1387, 2950
BsiSI	CCGG	4 cut(s)	27, 1892, 2645, 2936
BslFI	GGGAC	4 cut(s)	2124, 2491, 2672, 2765
BslI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
BsmAI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BsmBI	CGTCTC	1 cut(s)	887
BsmFI	GGGAC	4 cut(s)	2124, 2491, 2672, 2765
BsmI	GAATGC	1 cut(s)	2851
BsnI	GGCC	9 cut(s)	26, 83, 1371, 1394, 1789, 1921, 2210, 2422, 2890
Bsp120I	GGGCCC	2 cut(s)	1919, 2208
Bsp1286I	GDGCHC	4 cut(s)	1387, 1923, 2212, 2950
Bsp13I	TCCGGA	1 cut(s)	2644
Bsp1407I	TGTACA	1 cut(s)	2007
Bsp143I	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
Bsp1720I	GCTNAGC	1 cut(s)	2882
BspANI	GGCC	9 cut(s)	26, 83, 1371, 1394, 1789, 1921, 2210, 2422, 2890
BspCNI	CTCAG	5 cut(s)	667, 1783, 2212, 2806, 2895
BspEI	TCCGGA	1 cut(s)	2644
BspFNI	CGCG	2 cut(s)	2619, 2944
BspPI	GGATC	4 cut(s)	2636, 2649, 2990, 3045
BspT107I	GGYRCC	2 cut(s)	2025, 2162
BspTI	CTTAAG	1 cut(s)	2030
BsrDI	GCAATG	1 cut(s)	1365
BsrGI	TGTACA	1 cut(s)	2007
BsrI	ACTGG	5 cut(s)	647, 1145, 1372, 2233, 2955
BssMI	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
BssNI	GRCGYC	2 cut(s)	2113, 3053
BssSI	CACGAG	3 cut(s)	106, 316, 987
BssT1I	CCWWGG	6 cut(s)	65, 411, 1378, 1930, 2092, 2106
Bst2BI	CACGAG	3 cut(s)	106, 316, 987
Bst2UI	CCWGG	7 cut(s)	244, 328, 1334, 1804, 2604, 2656, 2798
Bst4CI	ACNGT	8 cut(s)	592, 997, 1010, 1018, 1998, 2181, 2761, 2770
BstACI	GRCGYC	2 cut(s)	2113, 3053
BstAFI	CTTAAG	1 cut(s)	2030
BstAPI	GCANNNNNTGC	1 cut(s)	2162
BstAUI	TGTACA	1 cut(s)	2007
BstBAI	YACGTR	1 cut(s)	2555
BstC8I	GCNNGC	7 cut(s)	7, 72, 2376, 2587, 2740, 2888, 2946
BstDEI	CTNAG	7 cut(s)	654, 1791, 2220, 2456, 2814, 2882, 2975
BstEII	GGTNACC	1 cut(s)	1727
BstENI	CCTNNNNNAGG	1 cut(s)	1929
BstF5I	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BstFNI	CGCG	2 cut(s)	2619, 2944
BstHHI	GCGC	3 cut(s)	670, 2619, 2944
BstKTI	GATC	8 cut(s)	865, 986, 2226, 2371, 2518, 2644, 2998, 3040
BstMAI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BstMBI	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 643, 1019, 1391, 2162, 2815, 2887
BstNI	CCWGG	7 cut(s)	244, 328, 1334, 1804, 2604, 2656, 2798
BstNSI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
BstPAI	GACNNNNGTC	1 cut(s)	1478
BstPI	GGTNACC	1 cut(s)	1727
BstSCI	CCNGG	8 cut(s)	242, 326, 1332, 1802, 1891, 2602, 2654, 2796
BstSFI	CTRYAG	2 cut(s)	979, 2855
BstSLI	GKGCMC	4 cut(s)	1387, 1923, 2212, 2950
BstUI	CGCG	2 cut(s)	2619, 2944
BstV1I	GCAGC	7 cut(s)	277, 361, 529, 613, 652, 1480, 2168
BstV2I	GAAGAC	5 cut(s)	152, 404, 1803, 2330, 2712
BstX2I	RGATCY	2 cut(s)	2223, 2641
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	2 cut(s)	2223, 2641
Bsu36I	CCTNAGG	1 cut(s)	1791
BsuRI	GGCC	9 cut(s)	26, 83, 1371, 1394, 1789, 1921, 2210, 2422, 2890
BtgZI	GCGATG	1 cut(s)	2504
BtsCI	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BtsIMutI	CAGTG	6 cut(s)	654, 993, 1006, 1152, 1945, 2948
Cac8I	GCNNGC	7 cut(s)	7, 72, 2376, 2587, 2740, 2888, 2946
CfoI	GCGC	3 cut(s)	670, 2619, 2944
CseI	GACGC	2 cut(s)	2121, 3042
Csp6I	GTAC	8 cut(s)	207, 976, 2008, 2026, 2236, 2507, 2651, 2905
CspCI	CAANNNNNGTGG	4 cut(s)	261, 296, 597, 632
CviAII	CATG	7 cut(s)	881, 1439, 1540, 2011, 2252, 2586, 2908
CviQI	GTAC	8 cut(s)	207, 976, 2008, 2026, 2236, 2507, 2651, 2905
DdeI	CTNAG	7 cut(s)	654, 1791, 2220, 2456, 2814, 2882, 2975
DpnI	GATC	8 cut(s)	864, 985, 2225, 2370, 2517, 2643, 2997, 3039
DpnII	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
DraI	TTTAAA	1 cut(s)	2073
EaeI	YGGCCR	1 cut(s)	1392
EciI	GGCGGA	2 cut(s)	120, 624
Eco130I	CCWWGG	6 cut(s)	65, 411, 1378, 1930, 2092, 2106
Eco24I	GRGCYC	2 cut(s)	1923, 2212
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	3 cut(s)	1336, 1480, 2686
Eco57I	CTGAAG	5 cut(s)	21, 1518, 1707, 1881, 2575
Eco72I	CACGTG	1 cut(s)	2555
Eco81I	CCTNAGG	1 cut(s)	1791
Eco91I	GGTNACC	1 cut(s)	1727
EcoNI	CCTNNNNNAGG	1 cut(s)	1929
EcoO109I	RGGNCCY	3 cut(s)	1919, 1920, 2208
EcoO65I	GGTNACC	1 cut(s)	1727
EcoRI	GAATTC	1 cut(s)	1601
EcoRII	CCWGG	7 cut(s)	242, 326, 1332, 1802, 2602, 2654, 2796
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	6 cut(s)	65, 411, 1378, 1930, 2092, 2106
EcoT22I	ATGCAT	2 cut(s)	2811, 2962
EcoT38I	GRGCYC	2 cut(s)	1923, 2212
ErhI	CCWWGG	6 cut(s)	65, 411, 1378, 1930, 2092, 2106
Esp3I	CGTCTC	1 cut(s)	887
FaeI	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
FaqI	GGGAC	4 cut(s)	2124, 2491, 2672, 2765
FatI	CATG	7 cut(s)	880, 1438, 1539, 2010, 2251, 2585, 2907
FauI	CCCGC	3 cut(s)	748, 2747, 2879
FauNDI	CATATG	1 cut(s)	2413
FbaI	TGATCA	1 cut(s)	2515
FblI	GTMKAC	1 cut(s)	1364
Fnu4HI	GCNGC	8 cut(s)	291, 375, 441, 543, 627, 666, 1494, 2157
FokI	GGATG	7 cut(s)	860, 1271, 1452, 1592, 2155, 2369, 2796
FriOI	GRGCYC	2 cut(s)	1923, 2212
Fsp4HI	GCNGC	8 cut(s)	291, 375, 441, 543, 627, 666, 1494, 2157
FspBI	CTAG	6 cut(s)	150, 252, 504, 1454, 2333, 2850
GlaI	GCGC	3 cut(s)	669, 2618, 2943
GluI	GCNGC	8 cut(s)	291, 375, 441, 543, 627, 666, 1494, 2157
GsuI	CTGGAG	1 cut(s)	2372
HaeIII	GGCC	9 cut(s)	26, 83, 1371, 1394, 1789, 1921, 2210, 2422, 2890
HapII	CCGG	4 cut(s)	27, 1892, 2645, 2936
HgaI	GACGC	2 cut(s)	2121, 3042
HhaI	GCGC	3 cut(s)	670, 2619, 2944
Hin1I	GRCGYC	2 cut(s)	2113, 3053
Hin1II	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
Hin6I	GCGC	3 cut(s)	668, 2617, 2942
HinP1I	GCGC	3 cut(s)	668, 2617, 2942
HincII	GTYRAC	1 cut(s)	1426
HindII	GTYRAC	1 cut(s)	1426
HpaII	CCGG	4 cut(s)	27, 1892, 2645, 2936
HphI	GGTGA	3 cut(s)	1739, 1907, 2633
Hpy166II	GTNNAC	5 cut(s)	1365, 1385, 1426, 2008, 2948
Hpy8I	GTNNAC	5 cut(s)	1365, 1385, 1426, 2008, 2948
Hpy99I	CGWCG	2 cut(s)	304, 556
HpyCH4III	ACNGT	8 cut(s)	592, 997, 1010, 1018, 1998, 2181, 2761, 2770
HpyCH4IV	ACGT	2 cut(s)	2554, 2980
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 643, 1019, 1391, 2162, 2815, 2887
HpyF3I	CTNAG	7 cut(s)	654, 1791, 2220, 2456, 2814, 2882, 2975
HpySE526I	ACGT	2 cut(s)	2554, 2980
Hsp92I	GRCGYC	2 cut(s)	2113, 3053
Hsp92II	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
HspAI	GCGC	3 cut(s)	668, 2617, 2942
Kpn2I	TCCGGA	1 cut(s)	2644
KpnI	GGTACC	1 cut(s)	2029
Ksp22I	TGATCA	1 cut(s)	2515
Kzo9I	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
LmnI	GCTCC	4 cut(s)	1335, 1355, 1807, 1825
Lsp1109I	GCAGC	7 cut(s)	277, 361, 529, 613, 652, 1480, 2168
LweI	GCATC	4 cut(s)	865, 2347, 2397, 2818
MaeI	CTAG	6 cut(s)	150, 252, 504, 1454, 2333, 2850
MaeII	ACGT	2 cut(s)	2554, 2980
MaeIII	GTNAC	7 cut(s)	523, 649, 824, 1408, 1727, 1865, 2773
MalI	GATC	8 cut(s)	864, 985, 2225, 2370, 2517, 2643, 2997, 3039
MboI	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	2223, 2641
MhlI	GDGCHC	4 cut(s)	1387, 1923, 2212, 2950
MlsI	TGGCCA	1 cut(s)	1394
MluNI	TGGCCA	1 cut(s)	1394
MlyI	GAGTC	5 cut(s)	646, 1232, 1459, 1944, 2320
MmeI	TCCRAC	4 cut(s)	323, 575, 816, 2896
Mox20I	TGGCCA	1 cut(s)	1394
Mph1103I	ATGCAT	2 cut(s)	2811, 2962
MroI	TCCGGA	1 cut(s)	2644
MroXI	GAANNNNTTC	2 cut(s)	34, 1086
MscI	TGGCCA	1 cut(s)	1394
MseI	TTAA	4 cut(s)	1547, 1764, 2031, 2072
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	1394
MspA1I	CMGCKG	4 cut(s)	217, 385, 2159, 2886
MspCI	CTTAAG	1 cut(s)	2030
MspI	CCGG	4 cut(s)	27, 1892, 2645, 2936
MspR9I	CCNGG	8 cut(s)	244, 328, 1334, 1804, 1893, 2604, 2656, 2798
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	2851
MvaI	CCWGG	7 cut(s)	244, 328, 1334, 1804, 2604, 2656, 2798
MvnI	CGCG	2 cut(s)	2619, 2944
MwoI	GCNNNNNNNGC	7 cut(s)	80, 643, 1019, 1391, 2162, 2815, 2887
NciI	CCSGG	1 cut(s)	1893
NdeI	CATATG	1 cut(s)	2413
NdeII	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
NlaIII	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
NmeAIII	GCCGAG	2 cut(s)	510, 663
NmuCI	GTSAC	5 cut(s)	523, 649, 824, 1727, 2773
NsiI	ATGCAT	2 cut(s)	2811, 2962
NspI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	2589
PasI	CCCWGGG	1 cut(s)	2655
PcsI	WCGNNNNNNNCGW	2 cut(s)	314, 398
PctI	GAATGC	1 cut(s)	2851
PdmI	GAANNNNTTC	2 cut(s)	34, 1086
PfeI	GAWTC	8 cut(s)	565, 689, 852, 1286, 1682, 1768, 2088, 2536
PflFI	GACNNNGTC	1 cut(s)	995
PfoI	TCCNGGA	1 cut(s)	1332
PkrI	GCNGC	8 cut(s)	292, 376, 442, 544, 628, 667, 1495, 2158
PleI	GAGTC	5 cut(s)	646, 1232, 1458, 1943, 2320
PmaCI	CACGTG	1 cut(s)	2555
PmlI	CACGTG	1 cut(s)	2555
PpsI	GAGTC	5 cut(s)	646, 1232, 1458, 1943, 2320
Ppu21I	YACGTR	1 cut(s)	2555
PshAI	GACNNNNGTC	1 cut(s)	1478
Psp6I	CCWGG	7 cut(s)	242, 326, 1332, 1802, 2602, 2654, 2796
PspCI	CACGTG	1 cut(s)	2555
PspEI	GGTNACC	1 cut(s)	1727
PspGI	CCWGG	7 cut(s)	242, 326, 1332, 1802, 2602, 2654, 2796
PspOMI	GGGCCC	2 cut(s)	1919, 2208
PsuI	RGATCY	2 cut(s)	2223, 2641
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	2159
RsaI	GTAC	8 cut(s)	208, 977, 2009, 2027, 2237, 2508, 2652, 2906
RsaNI	GTAC	8 cut(s)	207, 976, 2008, 2026, 2236, 2507, 2651, 2905
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	1547, 1764, 2031, 2072
SatI	GCNGC	8 cut(s)	291, 375, 441, 543, 627, 666, 1494, 2157
Sau3AI	GATC	8 cut(s)	862, 983, 2223, 2368, 2515, 2641, 2995, 3037
SchI	GAGTC	5 cut(s)	646, 1232, 1459, 1944, 2320
ScrFI	CCNGG	8 cut(s)	244, 328, 1334, 1804, 1893, 2604, 2656, 2798
SduI	GDGCHC	4 cut(s)	1387, 1923, 2212, 2950
SfaNI	GCATC	4 cut(s)	865, 2347, 2397, 2818
SfcI	CTRYAG	2 cut(s)	979, 2855
SinI	GGWCC	3 cut(s)	1336, 1480, 2686
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	1517, 2030
SmoI	CTYRAG	2 cut(s)	1517, 2030
SphI	GCATGC	1 cut(s)	2589
SspMI	CTAG	6 cut(s)	150, 252, 504, 1454, 2333, 2850
StyD4I	CCNGG	8 cut(s)	242, 326, 1332, 1802, 1891, 2602, 2654, 2796
StyI	CCWWGG	6 cut(s)	65, 411, 1378, 1930, 2092, 2106
TaaI	ACNGT	8 cut(s)	592, 997, 1010, 1018, 1998, 2181, 2761, 2770
TaiI	ACGT	2 cut(s)	2557, 2983
TaqI	TCGA	7 cut(s)	20, 56, 140, 308, 392, 692, 2064
TatI	WGTACW	2 cut(s)	206, 2007
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	8 cut(s)	565, 689, 852, 1286, 1682, 1768, 2088, 2536
Tru1I	TTAA	4 cut(s)	1547, 1764, 2031, 2072
Tru9I	TTAA	4 cut(s)	1547, 1764, 2031, 2072
TscAI	CASTG	6 cut(s)	654, 1000, 1013, 1152, 1945, 2955
TseFI	GTSAC	5 cut(s)	523, 649, 824, 1727, 2773
TseI	GCWGC	7 cut(s)	290, 374, 542, 626, 665, 1493, 2156
Tsp45I	GTSAC	5 cut(s)	523, 649, 824, 1727, 2773
TspGWI	ACGGA	2 cut(s)	28, 2174
TspRI	CASTG	6 cut(s)	654, 1000, 1013, 1152, 1945, 2955
Tth111I	GACNNNGTC	1 cut(s)	995
Vha464I	CTTAAG	1 cut(s)	2030
VneI	GTGCAC	2 cut(s)	1383, 2946
VpaK11BI	GGWCC	3 cut(s)	1336, 1480, 2686
XagI	CCTNNNNNAGG	1 cut(s)	1929
XapI	RAATTY	2 cut(s)	1601, 2075
XbaI	TCTAGA	1 cut(s)	1453
XceI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1937, 2662
XmiI	GTMKAC	1 cut(s)	1364
XmnI	GAANNNNTTC	2 cut(s)	34, 1086
XspI	CTAG	6 cut(s)	150, 252, 504, 1454, 2333, 2850
Zsp2I	ATGCAT	2 cut(s)	2811, 2962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.