Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8144248.1

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 602

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8144248.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ctgattgagagctgtacctattattgcgacactaaatatctgttgccttattccacctttgtcaacttcccacctgaaaatgtgcaggctggaagtgataactcatcaacaatttccagtgagattgacattagctgttctcgtgcggttaactcggaacttgaaaaaacttccacagttgtggagcaaggcaaaccagaagcaactgtacttgacttgtattctggttgtggagggatgtctactggcctatgccttggggcaaactcggcaaacttaaatcttgttacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

97

Amino Acids

10.29

Weight (kDa)

4.09

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	16, 210
AgsI	TTSAA	1 cut(s)	164
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	12, 135
AluI	AGCT	2 cut(s)	12, 135
AoxI	GGCC	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BauI	CACGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	117, 250
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	117, 250
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	117, 250
BssECI	CCNNGG	1 cut(s)	256
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	178, 208
BstC8I	GCNNGC	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	15, 209
CviJI	RGCY	4 cut(s)	12, 89, 135, 249
CviKI_1	RGCY	4 cut(s)	12, 89, 135, 249
CviQI	GTAC	2 cut(s)	15, 209
Eco130I	CCWWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaiI	YATR	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	64, 151
HindII	GTYRAC	2 cut(s)	64, 151
HpaI	GTTAAC	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	64, 151, 243
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	64, 151, 243
HpyCH4III	ACNGT	2 cut(s)	178, 208
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
KspAI	GTTAAC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	7 cut(s)	71, 75, 87, 130, 210, 210, 231
MaeIII	GTNAC	1 cut(s)	286
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	150, 278
MslI	CAYNNNNRTG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	16, 210
RsaNI	GTAC	2 cut(s)	15, 209
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	150, 278
SetI	ASST	5 cut(s)	14, 20, 59, 76, 137
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	178, 208
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	150, 278
Tru9I	TTAA	2 cut(s)	150, 278
TscAI	CASTG	1 cut(s)	124
TspRI	CASTG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.