Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

55542856 .. 55544499

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0462700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATCTCTACAACTGCTTGGACTACGCAGAGGTTTTGGCTAGCTGCAACAGTTTTGCGAAACCGGATGGCAGGAAGATCACAGTGTGGCTGAGTTTGTCTTGGGCTCCTACAATGTTGTTACTGAAAAGCCAGCTGGTGGTGCTCAGCAATATCCGCAAGAACCAGCTAGACCAGACGCAGTGGAATGGTGGTAGTGGTGCTGGGTTTACGTTTATCCAGAACAACATGATGCGTCCACATCACCTTAACCTGTATCACGGAGGAGTAGGACAGCCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCGCAACCTTGTGCTTACCAGCTGCCTTATCAGCAATATCAGACACAGTGGAATGTTGGCAGTGATGTGCGTCCACTTGGGCAGCTCACAGAAGCTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCACAGGAGAAGAAGCTGTATCTATGTTTCGATGAGCGCAGTGACCAAAGCAATTGTTGTTACGTTCTCCGCACCATCAATTTGTCCGAGTTACTTGCATGCTCCTGTGAGTTTAGCAGCGATACTGATCGAAGAAATAACCAAGTGCAGCTATTGCACCTCCAAAGCCAAACCGGAATCTCAGTTGCGCCAGCGAGAAAGTTCCTTTCAGCTGGGATAGCGCGGTGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

229

Amino Acids

26.11

Weight (kDa)

8.58

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	1 cut(s)	679
AciI	CCGC	4 cut(s)	157, 314, 526, 679
AdeI	CACNNNGTG	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	9 cut(s)	45, 136, 169, 334, 397, 407, 472, 607, 668
AluI	AGCT	9 cut(s)	45, 136, 169, 334, 397, 407, 472, 607, 668
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	311, 455
ApeKI	GCWGC	7 cut(s)	45, 298, 334, 394, 442, 573, 604
AspLEI	GCGC	3 cut(s)	495, 646, 679
AsuHPI	GGTGA	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	7 cut(s)	32, 310, 321, 406, 454, 585, 616
BccI	CCATC	2 cut(s)	62, 539
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	311, 455
BfaI	CTAG	2 cut(s)	42, 170
BfmI	CTRYAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	7 cut(s)	46, 299, 335, 395, 443, 574, 605
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	7 cut(s)	47, 300, 336, 396, 444, 575, 606
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	222
BmtI	GCTAGC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	2 cut(s)	311, 455
BsaWI	WCCGGW	2 cut(s)	64, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	83, 160, 651
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	7 cut(s)	32, 310, 321, 406, 454, 585, 616
BseYI	CCCAGC	2 cut(s)	203, 668
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	65, 630
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	311, 455
Bso31I	GGTCTC	2 cut(s)	311, 455
Bsp1286I	GDGCHC	2 cut(s)	109, 147
Bsp143I	GATC	2 cut(s)	78, 583
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	4 cut(s)	157, 314, 526, 679
BspCNI	CTCAG	3 cut(s)	84, 159, 650
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	423
BspOI	GCTAGC	1 cut(s)	45
BspTNI	GGTCTC	2 cut(s)	311, 455
BssMI	GATC	2 cut(s)	78, 583
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	53, 85, 360
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstC8I	GCNNGC	5 cut(s)	43, 134, 420, 556, 648
BstDEI	CTNAG	3 cut(s)	92, 146, 637
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	3 cut(s)	495, 646, 679
BstKTI	GATC	2 cut(s)	81, 586
BstMAI	GTCTC	2 cut(s)	311, 455
BstMBI	GATC	2 cut(s)	78, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 156, 343, 610, 674
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	7 cut(s)	32, 310, 321, 406, 454, 585, 616
BstXI	CCANNNNNNTGG	2 cut(s)	302, 446
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	3 cut(s)	188, 379, 502
BtsIMutI	CAGTG	5 cut(s)	90, 188, 365, 379, 502
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	5 cut(s)	43, 134, 420, 556, 648
CfoI	GCGC	3 cut(s)	495, 646, 679
CseI	GACGC	3 cut(s)	187, 224, 371
CviAII	CATG	4 cut(s)	229, 302, 446, 555
DdeI	CTNAG	3 cut(s)	92, 146, 637
DpnI	GATC	2 cut(s)	80, 585
DpnII	GATC	2 cut(s)	78, 583
DraIII	CACNNNGTG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	2 cut(s)	311, 455
EcoRII	CCWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	4 cut(s)	232, 305, 449, 558
FaiI	YATR	7 cut(s)	230, 285, 303, 429, 447, 481, 556
FatI	CATG	4 cut(s)	228, 301, 445, 554
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	7 cut(s)	46, 299, 335, 395, 443, 574, 605
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	7 cut(s)	46, 299, 335, 395, 443, 574, 605
FspBI	CTAG	2 cut(s)	42, 170
GlaI	GCGC	3 cut(s)	494, 645, 678
GluI	GCNGC	7 cut(s)	46, 299, 335, 395, 443, 574, 605
GsaI	CCCAGC	2 cut(s)	207, 672
HapII	CCGG	2 cut(s)	65, 630
HgaI	GACGC	3 cut(s)	187, 224, 371
HhaI	GCGC	3 cut(s)	495, 646, 679
Hin1II	CATG	4 cut(s)	232, 305, 449, 558
Hin6I	GCGC	3 cut(s)	493, 644, 677
HinP1I	GCGC	3 cut(s)	493, 644, 677
HinfI	GANTC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	65, 630
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	210, 239, 386
Hpy188I	TCNGA	2 cut(s)	354, 544
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	3 cut(s)	210, 239, 386
HpyCH4III	ACNGT	3 cut(s)	53, 85, 360
HpyCH4IV	ACGT	2 cut(s)	212, 519
HpyCH4V	TGCA	5 cut(s)	48, 418, 554, 604, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 156, 343, 610, 674
HpyF3I	CTNAG	3 cut(s)	92, 146, 637
HpySE526I	ACGT	2 cut(s)	212, 519
Hsp92II	CATG	4 cut(s)	232, 305, 449, 558
HspAI	GCGC	3 cut(s)	493, 644, 677
Kzo9I	GATC	2 cut(s)	78, 583
LmnI	GCTCC	3 cut(s)	112, 412, 563
Lsp1109I	GCAGC	7 cut(s)	32, 310, 321, 406, 454, 585, 616
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	42, 170
MaeII	ACGT	2 cut(s)	212, 519
MaeIII	GTNAC	4 cut(s)	120, 497, 515, 546
MalI	GATC	2 cut(s)	80, 585
MboI	GATC	2 cut(s)	78, 583
MboII	GAAGA	3 cut(s)	88, 478, 600
MfeI	CAATTG	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	109, 147
MluCI	AATT	4 cut(s)	289, 433, 508, 535
MnlI	CCTC	3 cut(s)	25, 257, 626
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	3 cut(s)	136, 334, 668
MspI	CCGG	2 cut(s)	65, 630
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	5 cut(s)	142, 156, 343, 610, 674
NdeII	GATC	2 cut(s)	78, 583
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	232, 305, 449, 558
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	633
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	47, 300, 336, 396, 444, 575, 606
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	2 cut(s)	203, 668
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	420
PvuII	CAGCTG	3 cut(s)	136, 334, 668
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	7 cut(s)	46, 299, 335, 395, 443, 574, 605
Sau3AI	GATC	2 cut(s)	78, 583
SbfI	CCTGCAGG	1 cut(s)	420
ScrFI	CCNGG	1 cut(s)	279
SdaI	CCTGCAGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	109, 147
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	558
Sse8387I	CCTGCAGG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	289, 433, 508, 535
SsiI	CCGC	4 cut(s)	157, 314, 526, 679
SspMI	CTAG	2 cut(s)	42, 170
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	53, 85, 360
TaiI	ACGT	2 cut(s)	215, 522
TaqI	TCGA	2 cut(s)	486, 586
TasI	AATT	4 cut(s)	289, 433, 508, 535
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	5 cut(s)	90, 188, 365, 379, 502
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	7 cut(s)	45, 298, 334, 394, 442, 573, 604
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	5 cut(s)	90, 188, 365, 379, 502
Van91I	CCANNNNNTGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	558
XspI	CTAG	2 cut(s)	42, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.