Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

1473385 .. 1473941

Gene Structure 557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCACGGACAGTTCTCGGTGAAATCTGATGTGTACAGTCTTGGTGTCTTGATCTTAGAGATTGTAACCAGCGAGAAGAACACTAGCTTTCAATCCGAACGTGGCGAATACCTCTTGACCTATGCTTGGAACCATTGGAGGGATGGGACGCCAGAAGAGTTGCTGGATCGAAATCTAAGACGTTCTTATTCAAGAAATGAAGTAATCAGATGTATCCATATTGCTTTACTGTGTGTCCAAGAAGATCCAGAGAAGAGACCTACAATGCAAACCGTAGTTCTCATGCTAAGCAGTTACTCGGTAACTATGCCATTGCCTCAAAAGCCAGCATTTTTCCTACATAGTACAGAAGAAATGAGGATGCCATCATTAACATCTCAACCATTAAACCAACACTCTAGCAATTCAGCTTGTTCAGTTAATGAAGCATCAAATTCTGAATTGTACCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

5.94

Isoelectric Point (pI)

64.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 94	3.8e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	174, 239
AcsI	RAATTY	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	35, 346, 446
AfiI	CCNNNNNNNGG	2 cut(s)	126, 139
AgsI	TTSAA	2 cut(s)	92, 192
AluBI	AGCT	2 cut(s)	87, 410
AluI	AGCT	2 cut(s)	87, 410
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	174, 239
ApoI	RAATTY	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	31
BccI	CCATC	2 cut(s)	137, 373
BciVI	GTATCC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	84, 399
BfuI	GTATCC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	2 cut(s)	351, 437
Bpu1102I	GCTNAGC	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 139
Bse3DI	GCAATG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	2 cut(s)	148, 366
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	126, 139
BseMI	GCAATG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	126, 139
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	51, 166, 244
Bsp1720I	GCTNAGC	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	174, 239
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	33
BssMI	GATC	3 cut(s)	51, 166, 244
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	4 cut(s)	12, 38, 231, 274
Bst6I	CTCTTC	2 cut(s)	150, 248
BstACI	GRCGYC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	55, 176, 287
BstF5I	GGATG	2 cut(s)	148, 366
BstKTI	GATC	3 cut(s)	54, 169, 247
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	51, 166, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	148, 366
Cac8I	GCNNGC	1 cut(s)	327
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	34, 345, 445
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	3 cut(s)	87, 325, 410
CviKI_1	RGCY	3 cut(s)	87, 325, 410
CviQI	GTAC	3 cut(s)	34, 345, 445
DdeI	CTNAG	3 cut(s)	55, 176, 287
DpnI	GATC	3 cut(s)	53, 168, 246
DpnII	GATC	3 cut(s)	51, 166, 244
Eam1104I	CTCTTC	2 cut(s)	150, 248
EarI	CTCTTC	2 cut(s)	150, 248
Eco31I	GGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	286
FaiI	YATR	5 cut(s)	123, 219, 284, 308, 342
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	282
FokI	GGATG	2 cut(s)	155, 373
FspBI	CTAG	2 cut(s)	84, 399
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	28, 97, 209, 439
Hpy188III	TCNNGA	4 cut(s)	49, 115, 192, 248
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	4 cut(s)	12, 38, 231, 274
HpyCH4IV	ACGT	2 cut(s)	100, 181
HpyCH4V	TGCA	2 cut(s)	4, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	3 cut(s)	55, 176, 287
HpySE526I	ACGT	2 cut(s)	100, 181
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	51, 166, 244
LpnPI	CCDG	5 cut(s)	82, 149, 165, 261, 339
LweI	GCATC	2 cut(s)	351, 437
MaeI	CTAG	2 cut(s)	84, 399
MaeII	ACGT	2 cut(s)	100, 181
MaeIII	GTNAC	3 cut(s)	64, 293, 301
MalI	GATC	3 cut(s)	53, 168, 246
MboI	GATC	3 cut(s)	51, 166, 244
MboII	GAAGA	5 cut(s)	88, 167, 254, 265, 362
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	403, 433, 440
MnlI	CCTC	4 cut(s)	122, 132, 327, 351
MseI	TTAA	4 cut(s)	371, 386, 420, 454
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	3 cut(s)	51, 166, 244
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	3 cut(s)	35, 346, 446
RsaNI	GTAC	3 cut(s)	34, 345, 445
SaqAI	TTAA	4 cut(s)	371, 386, 420, 454
Sau3AI	GATC	3 cut(s)	51, 166, 244
SetI	ASST	7 cut(s)	89, 103, 114, 122, 184, 262, 412
SfaNI	GCATC	2 cut(s)	351, 437
Sse9I	AATT	3 cut(s)	403, 433, 440
SspMI	CTAG	2 cut(s)	84, 399
TaaI	ACNGT	4 cut(s)	12, 38, 231, 274
TaiI	ACGT	2 cut(s)	103, 184
TaqI	TCGA	1 cut(s)	169
TasI	AATT	3 cut(s)	403, 433, 440
TatI	WGTACW	2 cut(s)	33, 344
Tru1I	TTAA	4 cut(s)	371, 386, 420, 454
Tru9I	TTAA	4 cut(s)	371, 386, 420, 454
TspDTI	ATGAA	2 cut(s)	213, 438
TspGWI	ACGGA	1 cut(s)	21
XapI	RAATTY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	84, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.