Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

92861425 .. 92863765

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAGCACCAGAAGGATTGTCGGAACTTATGGTTACATGTCCCCAGAGTATGCAATGCATGGACAGTTCTCAGAGAAGTCTGATGTGTACAGTCTTGGTGTCTTAATCTTAGAGATTGTAACAGGCAAGAAAAACACTAGTTTCTATCAATCAGACCGTGGTGAAGATCTCTTAACATATGCTTGGAAACATTGGAGAGAAGGGACGGTGGATGAATTGTTGGATTCAAATCTGAGATGTTCTTATTCAAGAAATGAAGTAATCAGATGTATCCATATTGGTTTACTGTGTGTTCAGGAAGATCCAAAGGAGAGACCTACTATGCAAACCATTGTTCTCATGCTAAGCAGTTACTCAGTTTCTATGCCTTTGCCTGAGAAGCCAGCGTTTTTCCTGCATAGTAAGGCAGAGTTGAACGTGCCATCAGTAGCCTCTGGATCATCATATCAACCCACTAGCAGCTCAGTCTCATGTTCTGTTAATGAAGTTTCAATTACTGAATTATTCCCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

191

Amino Acids

21.42

Weight (kDa)

5.81

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 132	2.6e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 133	2e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	356, 505
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	288, 309, 475, 552
AhlI	ACTAGT	1 cut(s)	197
AluBI	AGCT	1 cut(s)	522
AluI	AGCT	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	367, 532
AlwI	GGATC	2 cut(s)	356, 505
ApeKI	GCWGC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	1 cut(s)	490
BciVI	GTATCC	1 cut(s)	341
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	367, 532
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 516
BfuI	GTATCC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	521
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	5 cut(s)	144, 284, 426, 429, 537
BseXI	GCAGC	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	85, 277
BsmAI	GTCTC	2 cut(s)	367, 532
BsmFI	GGGAC	2 cut(s)	85, 277
Bso31I	GGTCTC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	49, 226, 361, 497
Bsp1720I	GCTNAGC	1 cut(s)	404
BspCNI	CTCAG	5 cut(s)	143, 285, 427, 428, 536
BspPI	GGATC	2 cut(s)	356, 505
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	4 cut(s)	49, 226, 361, 497
Bst4CI	ACNGT	5 cut(s)	126, 152, 218, 268, 348
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	7 cut(s)	130, 169, 293, 404, 415, 435, 523
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	52, 229, 364, 500
BstMAI	GTCTC	2 cut(s)	367, 532
BstMBI	GATC	4 cut(s)	49, 226, 361, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	226, 361
BstYI	RGATCY	2 cut(s)	226, 361
BsuI	GTATCC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	97, 119, 400, 531
CviJI	RGCY	3 cut(s)	442, 491, 522
CviKI_1	RGCY	3 cut(s)	442, 491, 522
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	7 cut(s)	130, 169, 293, 404, 415, 435, 523
DpnI	GATC	4 cut(s)	51, 228, 363, 499
DpnII	GATC	4 cut(s)	49, 226, 361, 497
Eco31I	GGTCTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	4 cut(s)	100, 122, 403, 534
FaqI	GGGAC	2 cut(s)	85, 277
FatI	CATG	4 cut(s)	96, 118, 399, 530
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	198, 516
GluI	GCNGC	1 cut(s)	520
Hin1II	CATG	4 cut(s)	100, 122, 403, 534
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	148, 344
Hpy188I	TCNGA	7 cut(s)	19, 83, 133, 142, 214, 294, 326
Hpy188III	TCNNGA	3 cut(s)	309, 356, 495
Hpy8I	GTNNAC	2 cut(s)	148, 344
HpyAV	CCTTC	2 cut(s)	66, 254
HpyCH4III	ACNGT	5 cut(s)	126, 152, 218, 268, 348
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	4 cut(s)	113, 118, 385, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	7 cut(s)	130, 169, 293, 404, 415, 435, 523
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	100, 122, 403, 534
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	49, 226, 361, 497
LpnPI	CCDG	8 cut(s)	82, 117, 168, 341, 447, 456, 467, 480
Lsp1109I	GCAGC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	198, 516
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	92, 178, 410
MalI	GATC	4 cut(s)	51, 228, 363, 499
MboI	GATC	4 cut(s)	49, 226, 361, 497
MboII	GAAGA	2 cut(s)	236, 371
MflI	RGATCY	2 cut(s)	226, 361
MluCI	AATT	3 cut(s)	275, 552, 560
MmeI	TCCRAC	2 cut(s)	61, 261
MnlI	CCTC	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	3 cut(s)	164, 233, 540
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	4 cut(s)	49, 226, 361, 497
NlaIII	CATG	4 cut(s)	100, 122, 403, 534
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	521
PscI	ACATGT	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	226, 361
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	164, 233, 540
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	4 cut(s)	49, 226, 361, 497
SetI	ASST	3 cut(s)	379, 480, 524
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	3 cut(s)	275, 552, 560
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	198, 516
TaaI	ACNGT	5 cut(s)	126, 152, 218, 268, 348
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	571
TasI	AATT	3 cut(s)	275, 552, 560
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	164, 233, 540
Tru9I	TTAA	3 cut(s)	164, 233, 540
TseI	GCWGC	1 cut(s)	519
TspDTI	ATGAA	4 cut(s)	17, 288, 330, 558
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	2 cut(s)	198, 516
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.