Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005660.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

27826 .. 30112

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005660.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgaaccctaaaattgcagattttggtactgcaagattgtttgtcaagggtcaaactcaaggagatgcaaagactattgttgggaccgatggatatatggcgccagaatatgtaaatcacggtcgcttttctgtcaaatcagatgtctttagttttggcgtgatagttcttgagatagtcagcggtaagaagattagtagttttcggattggtgacaatgcagaggaccttttaagctatagcttaggctatagagtggaaacaatgagcataacaaatgttgagaaaatggtcgataagttcgaggactacctgaatatgaagaagcttgctaaggatatcaaggaggaagaatttgttgagatagataggatggcccttggagccgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

130

Amino Acids

14.52

Weight (kDa)

5.21

Isoelectric Point (pI)

18.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	237, 243, 328
AluI	AGCT	3 cut(s)	237, 243, 328
AoxI	GGCC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	84, 226, 376
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	84, 226
BanI	GGYRCC	1 cut(s)	100
BccI	CCATC	2 cut(s)	83, 367
BceAI	ACGGC	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	238, 250
BfoI	RGCGCY	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	84, 226
BmgT120I	GGNCC	3 cut(s)	84, 226, 376
BmiI	GGNNCC	3 cut(s)	85, 102, 385
BmsI	GCATC	1 cut(s)	55
Bpu10I	CCTNAGC	2 cut(s)	244, 333
BpuEI	CTTGAG	2 cut(s)	42, 191
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	85, 102, 385
BspT107I	GGYRCC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	244, 333
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSFI	CTRYAG	2 cut(s)	238, 250
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	84, 226, 376
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	6 cut(s)	237, 243, 249, 328, 377, 386
CviKI_1	RGCY	6 cut(s)	237, 243, 249, 328, 377, 386
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	244, 333
DinI	GGCGCC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	84, 226
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	379
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	379
FaiI	YATR	7 cut(s)	96, 98, 111, 240, 252, 272, 320
FaqI	GGGAC	1 cut(s)	97
FokI	GGATG	1 cut(s)	385
GlaI	GCGC	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	326
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	142, 207
Hpy188III	TCNNGA	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	17, 32, 68, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	244, 333
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	2 cut(s)	117, 326
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	202, 334, 362
MluCI	AATT	2 cut(s)	12, 353
Mly113I	GGCGCC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	217, 298, 340
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	383
NarI	GGCGCC	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	85, 102, 385
NmuCI	GTSAC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PluTI	GGCGCC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	85, 102, 385
PspPI	GGNCC	3 cut(s)	84, 226, 376
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	233
Sau96I	GGNCC	3 cut(s)	84, 226, 376
SetI	ASST	5 cut(s)	231, 239, 245, 315, 330
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	2 cut(s)	238, 250
SfoI	GGCGCC	1 cut(s)	102
SinI	GGWCC	2 cut(s)	84, 226
SmlI	CTYRAG	2 cut(s)	57, 170
SmoI	CTYRAG	2 cut(s)	57, 170
Sse9I	AATT	2 cut(s)	12, 353
SsiI	CCGC	1 cut(s)	183
SspDI	GGCGCC	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	294, 303
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	12, 353
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	17, 335
VpaK11BI	GGWCC	2 cut(s)	84, 226
XapI	RAATTY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.