Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8312939.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 442

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8312939.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgttggctttgcttgctgcttggttagcgaggcttgcacactcgaacactggacttccttggacaatccttgctgcccttcgacactcgagatatatggctccagagtatgtcatgcgtggacagttttctgtcaagtctgatgcctatagctccggtgtgttagttctggagatagtgagtggacagaaaaacagttctttcagtcatgaagggaatgtggaagatcttctaagctat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

80

Amino Acids

8.83

Weight (kDa)

6.82

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	153, 237
AluI	AGCT	2 cut(s)	153, 237
Ama87I	CYCGRG	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	17, 74
Asp700I	GAANNNNTTC	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	4, 61
BfmI	CTRYAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	2 cut(s)	18, 75
BlsI	GCNGC	2 cut(s)	19, 76
BmeT110I	CYCGRG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	87, 191
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	4, 61
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	126, 197
BstC8I	GCNNGC	2 cut(s)	15, 36
BstDEI	CTNAG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	4, 61
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	15, 36
CciI	TCATGA	1 cut(s)	208
CviAII	CATG	2 cut(s)	115, 209
CviJI	RGCY	5 cut(s)	8, 34, 101, 153, 237
CviKI_1	RGCY	5 cut(s)	8, 34, 101, 153, 237
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	118, 212
FaiI	YATR	6 cut(s)	96, 98, 111, 116, 150, 210
FatI	CATG	2 cut(s)	114, 208
Fnu4HI	GCNGC	2 cut(s)	18, 75
Fsp4HI	GCNGC	2 cut(s)	18, 75
GluI	GCNGC	2 cut(s)	18, 75
GsuI	CTGGAG	2 cut(s)	87, 191
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	2 cut(s)	118, 212
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	122, 185
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	90, 104, 170, 209
Hpy8I	GTNNAC	2 cut(s)	122, 185
HpyAV	CCTTC	2 cut(s)	89, 206
HpyCH4III	ACNGT	2 cut(s)	126, 197
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	118, 212
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	106, 158
LpnPI	CCDG	4 cut(s)	36, 117, 155, 169
Lsp1109I	GCAGC	2 cut(s)	4, 61
LweI	GCATC	1 cut(s)	133
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	221, 236
MflI	RGATCY	1 cut(s)	226
MnlI	CCTC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	228
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	118, 212
NlaIV	GGNNCC	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	88
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	19, 76
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	226
SatI	GCNGC	2 cut(s)	18, 75
Sau3AI	GATC	1 cut(s)	226
SetI	ASST	2 cut(s)	155, 239
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	126, 197
TaqI	TCGA	3 cut(s)	44, 82, 89
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	17, 74
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.