Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

26655961 .. 26656496

Gene Structure 536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCTCCCAAATATGTGAAGCATGGACATTTTTCTGTTAAGTCTGATGTCTATAGTTTTGGCGTGTTGATTTTGGAGATAATAAGTGGACAGAAAAATAGTTGCTTCCATCATGGAGAGAATATGGAGACTCTTCCAAGCTATGCATGGAAAAGCTGGAGGGAAGGGAAATGTTCAAATGTGATAGATCCCAGATTGAAGAAAGGTTCAAGGGCTGAAATAATGAGATGCATACACATTGGACTGTTATGTGTGCAAGAAAGTCTAGCTGATAGACCAACCATGGCTTTAGTTATCCTCATGTTCAATAGCTACTCTCTCAGTCTCCCAGTACCCTCAAAACCAGCATTTTTAATGTATAGTAGCGTCAGATCCAGGACAAACTTTGTCTCTGTCGAAGTAACCGAAAATGATGATGCTTCATTAATCACTGAAGTAAATCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

8.71

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 95	6.3e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	182, 366
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	177, 199, 210, 307
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	141, 156, 269, 312
AluI	AGCT	4 cut(s)	141, 156, 269, 312
Alw26I	GTCTC	3 cut(s)	122, 329, 394
AlwI	GGATC	2 cut(s)	182, 366
AseI	ATTAAT	1 cut(s)	425
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	122, 329, 394
BfaI	CTAG	2 cut(s)	266, 448
BfmI	CTRYAG	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	218, 406
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	122, 329, 394
Bsp143I	GATC	2 cut(s)	187, 371
Bsp19I	CCATGG	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	333
BspPI	GGATC	2 cut(s)	182, 366
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	187, 371
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	190, 374
BstMAI	GTCTC	3 cut(s)	122, 329, 394
BstMBI	GATC	2 cut(s)	187, 371
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	187, 371
BstYI	RGATCY	2 cut(s)	187, 371
BtgI	CCRYGG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	429
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	5 cut(s)	23, 113, 147, 283, 301
CviJI	RGCY	6 cut(s)	141, 156, 215, 269, 287, 312
CviKI_1	RGCY	6 cut(s)	141, 156, 215, 269, 287, 312
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	189, 373
DpnII	GATC	2 cut(s)	187, 371
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	2 cut(s)	148, 233
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	26, 116, 150, 286, 304
FatI	CATG	5 cut(s)	22, 112, 146, 282, 300
FspBI	CTAG	2 cut(s)	266, 448
GsuI	CTGGAG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	26, 116, 150, 286, 304
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	46, 371
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	146, 231, 256
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	26, 116, 150, 286, 304
Kzo9I	GATC	2 cut(s)	187, 371
LpnPI	CCDG	6 cut(s)	142, 205, 342, 357, 361, 388
LweI	GCATC	2 cut(s)	218, 406
MaeI	CTAG	2 cut(s)	266, 448
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	189, 373
MboI	GATC	2 cut(s)	187, 371
MboII	GAAGA	2 cut(s)	125, 211
MflI	RGATCY	2 cut(s)	187, 371
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	15, 153, 308, 346
Mph1103I	ATGCAT	2 cut(s)	148, 233
MseI	TTAA	3 cut(s)	39, 353, 425
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	187, 371
NlaIII	CATG	5 cut(s)	26, 116, 150, 286, 304
NsiI	ATGCAT	2 cut(s)	148, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	374
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	187, 371
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	39, 353, 425
Sau3AI	GATC	2 cut(s)	187, 371
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	376
SetI	ASST	5 cut(s)	143, 158, 208, 271, 314
SfaNI	GCATC	2 cut(s)	218, 406
SfcI	CTRYAG	1 cut(s)	52
SspMI	CTAG	2 cut(s)	266, 448
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	396
Tru1I	TTAA	3 cut(s)	39, 353, 425
Tru9I	TTAA	3 cut(s)	39, 353, 425
TscAI	CASTG	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XspI	CTAG	2 cut(s)	266, 448
Zsp2I	ATGCAT	2 cut(s)	148, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.