Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002206.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

54668 .. 55073

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002206.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgaagattctcgacttcgaattattcaccgtgatctcaaagccagcaacattttgttggatgaagattcctaaaattgtagattttggtatggcaaggttgtttgtgatggatcaaactcaacgagatacaaagaccatcgttgggacctatagatacatggcacctgaatatgcaagtcatgggcgcttttctgtcaagtcagatgtcttcagttttggtgtgtcagttcttgatataattactggcaagaagagtggtagttttcagaatggtgaaaatgaagacgatttgttaagctatgtgagtaagaatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

7.82

Isoelectric Point (pI)

18.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	144
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
AlwI	GGATC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	19, 287
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	202, 291
BccI	CCATC	2 cut(s)	103, 146
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	148, 165
BpiI	GAAGAC	2 cut(s)	202, 291
Bpu14I	TTCGAA	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	33, 112
BspLI	GGNNCC	2 cut(s)	148, 165
BspPI	GGATC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	33, 112
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	36, 115
BstMBI	GATC	2 cut(s)	33, 112
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	2 cut(s)	202, 291
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	2 cut(s)	160, 182
CviJI	RGCY	2 cut(s)	43, 300
CviKI_1	RGCY	2 cut(s)	43, 300
DpnI	GATC	2 cut(s)	35, 114
DpnII	GATC	2 cut(s)	33, 112
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	147
FaeI	CATG	2 cut(s)	163, 185
FaiI	YATR	9 cut(s)	92, 153, 161, 174, 183, 239, 303, 317, 319
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	159, 181
FokI	GGATG	1 cut(s)	73
GlaI	GCGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	190
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	163, 185
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	7, 67
HphI	GGTGA	2 cut(s)	19, 287
Hpy188I	TCNGA	2 cut(s)	205, 270
Hpy188III	TCNNGA	2 cut(s)	11, 233
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	163, 185
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	33, 112
LpnPI	CCDG	3 cut(s)	57, 180, 231
MalI	GATC	2 cut(s)	35, 114
MboI	GATC	2 cut(s)	33, 112
MboII	GAAGA	5 cut(s)	16, 76, 202, 265, 296
MluCI	AATT	3 cut(s)	20, 75, 240
MmeI	TCCRAC	1 cut(s)	38
MseI	TTAA	1 cut(s)	296
NdeII	GATC	2 cut(s)	33, 112
NlaIII	CATG	2 cut(s)	163, 185
NlaIV	GGNNCC	2 cut(s)	148, 165
NspV	TTCGAA	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	7, 67
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	148, 165
PspPI	GGNCC	1 cut(s)	147
PspPPI	RGGWCCY	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	296
Sau3AI	GATC	2 cut(s)	33, 112
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	4 cut(s)	101, 152, 169, 302
SfcI	CTRYAG	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	3 cut(s)	20, 75, 240
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	12, 18
TasI	AATT	3 cut(s)	20, 75, 240
TfiI	GAWTC	2 cut(s)	7, 67
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	17, 77, 297
VpaK11BI	GGWCC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.