Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

63116226 .. 63116576

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG404200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGGCATGGAATAGTTGGAAGGGAGGGACATCTTCAAATTTGATAGATCCCATGTTGAGGACTGGTTCGAGGCCTGAAATAGTGAGATGCATCCATATTGGATTGTTATGTGTTCAACAAAGCATAGGTGATAGACCAACCATGGCTGCAGTTATTCAAATGCTTACCAGCAACTCTGTTAATCTCCCAGTACCCTCACAACCAGCATTTTATATGTATAATCAAGGCATTGGATCCTCATCCGACATGTCGTTGGGATTTGAGAGTAACTCAGGATTGACATGGTCTGATCAATCCAAAAGCAACTCTGCCAACAAACCTATACTAGAAGCTTCATCTACCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

116

Amino Acids

12.54

Weight (kDa)

7.81

Isoelectric Point (pI)

64.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	44, 231, 244
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	39, 119, 161
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
AlwI	GGATC	3 cut(s)	44, 231, 244
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	2 cut(s)	80, 102
BmuI	ACTGGG	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	70, 191
Bse8I	GATNNNNATC	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	93, 242
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	70, 191
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	49, 236, 292
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	3 cut(s)	44, 231, 244
BsrI	ACTGG	2 cut(s)	70, 191
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	49, 236, 292
BssT1I	CCWWGG	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	93, 242
BstKTI	GATC	3 cut(s)	52, 239, 295
BstMBI	GATC	3 cut(s)	49, 236, 292
BstNSI	RCATGY	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	49, 236
BstYI	RGATCY	2 cut(s)	49, 236
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	93, 242
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	5 cut(s)	9, 55, 145, 250, 285
CviJI	RGCY	3 cut(s)	76, 149, 335
CviKI_1	RGCY	3 cut(s)	76, 149, 335
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	3 cut(s)	51, 238, 294
DpnII	GATC	3 cut(s)	49, 236, 292
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	12, 58, 148, 253, 288
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	8, 54, 144, 249, 284
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	80, 229
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	5 cut(s)	12, 58, 148, 253, 288
HindIII	AAGCTT	1 cut(s)	333
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	247, 292
Hpy188III	TCNNGA	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	4, 93, 152
HpyF3I	CTNAG	1 cut(s)	274
Hsp92II	CATG	5 cut(s)	12, 58, 148, 253, 288
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	49, 236, 292
LpnPI	CCDG	6 cut(s)	51, 90, 184, 204, 219, 261
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	80, 102
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	51, 238, 294
MboI	GATC	3 cut(s)	49, 236, 292
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	2 cut(s)	49, 236
MluCI	AATT	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	20, 54, 66, 208, 250
Mph1103I	ATGCAT	1 cut(s)	95
MseI	TTAA	2 cut(s)	183, 349
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	49, 236, 292
NlaIII	CATG	5 cut(s)	12, 58, 148, 253, 288
NlaIV	GGNNCC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	95
NspI	RCATGY	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	49, 236
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	183, 349
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	49, 236, 292
SetI	ASST	3 cut(s)	133, 325, 337
SfaNI	GCATC	2 cut(s)	80, 102
SfcI	CTRYAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	40
SseBI	AGGCCT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	183, 349
Tru9I	TTAA	2 cut(s)	183, 349
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.