Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

1213179 .. 1213800

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1013800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCATGGAGAAACTGGAAGGAGGATACGGTGTCAAATATCATAGATCCTGTGTTAGCGACAGGATTTGGAACCAAAATAATGAGATGCATCCACATTGGTTTACTTTGCGTCCAAGAAAATGTGGCTAGCAGACCAACCATGGCTTCAATTGTTTCGATGCTTAATAGTCATTCTGTCGCACTCTCATTACCTTCAAGACCTGCATATTATTTGCATAACAGTGAAAGAGACACCATGGAAGTAACAAAAACATATGAATCTAAAAATTATGCAGATGTGTTGATAAATGAGGACTCAGACATTACTGAGCCATATCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

109

Amino Acids

12.22

Weight (kDa)

5.5

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	150, 198
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	3 cut(s)	77, 99, 150
BmtI	GCTAGC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	141, 237
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	141, 237
BseGI	GGATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	300, 312
BseNI	ACTGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	2 cut(s)	141, 237
BspCNI	CTCAG	2 cut(s)	301, 311
BspLI	GGNNCC	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	141, 237
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	141, 237
Bst4CI	ACNGT	2 cut(s)	31, 224
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	298, 309
BstDSI	CCRYGG	2 cut(s)	141, 237
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	19
BtgI	CCRYGG	2 cut(s)	141, 237
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	130
CseI	GACGC	1 cut(s)	100
CviAII	CATG	3 cut(s)	6, 142, 238
CviJI	RGCY	3 cut(s)	128, 146, 313
CviKI_1	RGCY	3 cut(s)	128, 146, 313
DdeI	CTNAG	2 cut(s)	298, 309
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	141, 237
EcoT14I	CCWWGG	2 cut(s)	141, 237
EcoT22I	ATGCAT	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	141, 237
FaeI	CATG	3 cut(s)	9, 145, 241
FatI	CATG	3 cut(s)	5, 141, 237
FauNDI	CATATG	1 cut(s)	256
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	9, 145, 241
HinfI	GANTC	2 cut(s)	260, 296
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	13, 204
HpyCH4III	ACNGT	2 cut(s)	31, 224
HpyCH4V	TGCA	4 cut(s)	90, 206, 217, 275
HpyF3I	CTNAG	2 cut(s)	298, 309
Hsp92II	CATG	3 cut(s)	9, 145, 241
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	48, 63, 216
LweI	GCATC	3 cut(s)	77, 99, 150
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	150, 268
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	16, 286
Mph1103I	ATGCAT	1 cut(s)	92
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	150
NcoI	CCATGG	2 cut(s)	141, 237
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	46
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	9, 145, 241
NlaIV	GGNNCC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	290
SetI	ASST	2 cut(s)	196, 205
SfaNI	GCATC	3 cut(s)	77, 99, 150
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	150, 268
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	141, 237
TaaI	ACNGT	2 cut(s)	31, 224
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	150, 268
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	229
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.