Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

1559526 .. 1560353

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTACCTCAAAGCCAGCAATATATTGTTAGATGGGGACATGCATCCAAAAATATCTGATTTTGGCATGGCCAGGATCTTTGAGGTTGATCAAACTCAAGCAAATACAAATAGAATTGTCGGAACATATGGTTATATGTCTCCCGAGTATGCAATGCATGGGCAATTTTCTGTCAAGTCCGATATGTATAGTTTCGGTGTTTTAGTGCTAGAAATCATCAATGGCAAAAAGAACAGTCACTTTTTTCAGACCAATGCAGCTGAGAACCTGGCAAGCCATGCTTGGAAGTTATGGAGAGACGAGACATCTTTGGAATTGTTGGATCCGAGTCTGAGAGACTCTTATTCAAGGACTGAAGTAATCAGATGCATCCACATCGGCTTACTTTGTGTTCAGGAAGATCCAGCTGACAGGCCTACGATGCAATCAGTAGTTCTCATGCTCAATGGTTACTCTGTCAATCTACCATTACCTAAACAACCGGCATTTTCCCTCCAAGGCAAAGCGGTGGGGAACTCGTCAAAGACAACGTTGGAGTCCGATATCAACAATTCATCTATGTCCGTTTATAATGGATCTATCACTGAATTATACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

201

Amino Acids

22.4

Weight (kDa)

5.7

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AciI	CCGC	1 cut(s)	506
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	5 cut(s)	83, 317, 330, 395, 583
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	2 cut(s)	71, 267
AluBI	AGCT	2 cut(s)	260, 407
AluI	AGCT	2 cut(s)	260, 407
Alw26I	GTCTC	4 cut(s)	144, 291, 296, 330
AlwI	GGATC	5 cut(s)	83, 317, 330, 395, 583
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	69, 413
ApeKI	GCWGC	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	2 cut(s)	73, 269
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	4 cut(s)	144, 291, 296, 330
BfaI	CTAG	2 cut(s)	209, 597
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	73, 269
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	73, 269
BmsI	GCATC	4 cut(s)	52, 356, 378, 411
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	496
Bse118I	RCCGGY	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	73, 269
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	43, 369
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	252, 323
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	71, 415
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	4 cut(s)	144, 291, 296, 330
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	71, 415
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	75, 88, 322, 400, 575
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	2 cut(s)	71, 415
BspCNI	CTCAG	2 cut(s)	253, 324
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	5 cut(s)	83, 317, 330, 395, 583
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	5 cut(s)	75, 88, 322, 400, 575
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	73, 269
Bst4CI	ACNGT	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	16, 274
BstDEI	CTNAG	2 cut(s)	261, 332
BstF5I	GGATG	2 cut(s)	43, 369
BstKTI	GATC	5 cut(s)	78, 91, 325, 403, 578
BstMAI	GTCTC	4 cut(s)	144, 291, 296, 330
BstMBI	GATC	5 cut(s)	75, 88, 322, 400, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 421
BstNI	CCWGG	2 cut(s)	73, 269
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	71, 267
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	4 cut(s)	75, 322, 400, 575
BstYI	RGATCY	4 cut(s)	75, 322, 400, 575
BsuRI	GGCC	2 cut(s)	71, 415
BtsCI	GGATG	2 cut(s)	43, 369
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	16, 274
Cfr10I	RCCGGY	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	40, 67, 158, 278, 439
CviJI	RGCY	7 cut(s)	14, 71, 260, 276, 381, 407, 415
CviKI_1	RGCY	7 cut(s)	14, 71, 260, 276, 381, 407, 415
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	261, 332
DpnI	GATC	5 cut(s)	77, 90, 324, 402, 577
DpnII	GATC	5 cut(s)	75, 88, 322, 400, 575
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	71, 267
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	496
EcoT22I	ATGCAT	3 cut(s)	45, 159, 371
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	5 cut(s)	43, 70, 161, 281, 442
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	39, 66, 157, 277, 438
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	30, 356
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	209, 597
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	71, 415
HapII	CCGG	1 cut(s)	482
Hin1II	CATG	5 cut(s)	43, 70, 161, 281, 442
HinfI	GANTC	3 cut(s)	328, 338, 536
HpaII	CCGG	1 cut(s)	482
Hpy188I	TCNGA	8 cut(s)	58, 122, 181, 249, 327, 333, 365, 541
Hpy188III	TCNNGA	2 cut(s)	143, 395
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	6 cut(s)	43, 152, 157, 257, 369, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 421
HpyF3I	CTNAG	2 cut(s)	261, 332
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	5 cut(s)	43, 70, 161, 281, 442
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	75, 88, 322, 400, 575
LpnPI	CCDG	9 cut(s)	28, 58, 85, 254, 281, 380, 397, 417, 495
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	4 cut(s)	52, 356, 378, 411
MaeI	CTAG	2 cut(s)	209, 597
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	236, 449
MalI	GATC	5 cut(s)	77, 90, 324, 402, 577
MboI	GATC	5 cut(s)	75, 88, 322, 400, 575
MboII	GAAGA	1 cut(s)	410
MflI	RGATCY	4 cut(s)	75, 322, 400, 575
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	5 cut(s)	114, 164, 314, 550, 587
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	3 cut(s)	332, 337, 545
MmeI	TCCRAC	3 cut(s)	100, 300, 513
MnlI	CCTC	3 cut(s)	17, 76, 503
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	3 cut(s)	45, 159, 371
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	260, 407
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	73, 269
MvaI	CCWGG	2 cut(s)	73, 269
MwoI	GCNNNNNNNGC	2 cut(s)	278, 421
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	5 cut(s)	75, 88, 322, 400, 575
NlaIII	CATG	5 cut(s)	43, 70, 161, 281, 442
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	3 cut(s)	45, 159, 371
NspI	RCATGY	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	3 cut(s)	332, 336, 544
PpsI	GAGTC	3 cut(s)	332, 336, 544
PsiI	TTATAA	1 cut(s)	570
Psp1406I	AACGTT	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	71, 267
PspGI	CCWGG	2 cut(s)	71, 267
PspN4I	GGNNCC	1 cut(s)	324
PsuI	RGATCY	4 cut(s)	75, 322, 400, 575
PvuII	CAGCTG	2 cut(s)	260, 407
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	5 cut(s)	75, 88, 322, 400, 575
SchI	GAGTC	3 cut(s)	332, 337, 545
ScrFI	CCNGG	2 cut(s)	73, 269
SetI	ASST	7 cut(s)	9, 87, 262, 270, 409, 475, 533
SfaNI	GCATC	4 cut(s)	52, 356, 378, 411
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	5 cut(s)	114, 164, 314, 550, 587
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	2 cut(s)	209, 597
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	71, 267
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	533
TasI	AATT	5 cut(s)	114, 164, 314, 550, 587
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	1 cut(s)	589
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	209, 597
Zsp2I	ATGCAT	3 cut(s)	45, 159, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.