Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

27720556 .. 27736348

Gene Structure 15793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCCAACTTGTGCTACTAATAAGCCTCAGGAACTAGATGACGCGGTTACCGCAATTGATCACACAAAACCCAAAGCTGATGATACTTTGGAAGAAATTAGTCTCGTGGAATCGTTACAATATGACTTTGAAGATATTAGATCAGCAACAGATGACTTTTCTGATGAAAATAAGCTTGGACAAGGTGGATTTGGAGTTGTTTACAAGGTATGGAGAAATTGGAGGGATGATACAATTCCAAATATCATAGATCCCCTGTTAACAACAAGCTCAAGATATGACATAATAAGATGCATCCACATTGGTTTATTATGTGTCCAAGAAAATGTGAATGACAGACCAACCATGACTTCAGTTGTTTCCATGCTTAACAGTCATTCTCTCACACTCTCAACACCTTCACGACCTCCATATTATTGGCATTATAACACTGATTCAGAAACATCAGGGTCGGGATTTAGACTTACAGAGACATCTTATAAATCCGGAAGCTCTGTGCCAAGAAGAGTGGTTTCTGATATTACTGAAGTATATCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

180

Amino Acids

20.33

Weight (kDa)

4.75

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	426, 480
AccII	CGCG	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	2 cut(s)	44, 51
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	4 cut(s)	159, 191, 334, 366
AluBI	AGCT	4 cut(s)	77, 175, 270, 492
AluI	AGCT	4 cut(s)	77, 175, 270, 492
Alw26I	GTCTC	2 cut(s)	107, 464
AlwI	GGATC	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	27
BauI	CACGAG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	107, 464
BfaI	CTAG	2 cut(s)	35, 541
BmsI	GCATC	2 cut(s)	281, 303
BpuEI	CTTGAG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	485
BseGI	GGATG	2 cut(s)	232, 294
BseMII	CTCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	486
BsmAI	GTCTC	2 cut(s)	107, 464
Bsp13I	TCCGGA	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	58, 140, 250
BspACI	CCGC	2 cut(s)	44, 51
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	245
BssMI	GATC	3 cut(s)	58, 140, 250
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	232, 294
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	61, 143, 253
BstMAI	GTCTC	2 cut(s)	107, 464
BstMBI	GATC	3 cut(s)	58, 140, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstPI	GGTNACC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	232, 294
BtsIMutI	CAGTG	1 cut(s)	429
CseI	GACGC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	2 cut(s)	346, 364
CviJI	RGCY	5 cut(s)	25, 77, 175, 270, 492
CviKI_1	RGCY	5 cut(s)	25, 77, 175, 270, 492
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	60, 142, 252
DpnII	GATC	3 cut(s)	58, 140, 250
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	296
FaeI	CATG	2 cut(s)	349, 367
FatI	CATG	2 cut(s)	345, 363
FbaI	TGATCA	1 cut(s)	58
FokI	GGATG	2 cut(s)	239, 281
FspBI	CTAG	2 cut(s)	35, 541
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	349, 367
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	110, 434
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	486
Hpy166II	GTNNAC	2 cut(s)	202, 261
Hpy188I	TCNGA	3 cut(s)	163, 439, 517
Hpy188III	TCNNGA	5 cut(s)	29, 273, 402, 453, 486
Hpy8I	GTNNAC	2 cut(s)	202, 261
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	349, 367
Kpn2I	TCCGGA	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	58
KspAI	GTTAAC	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	58, 140, 250
LpnPI	CCDG	4 cut(s)	14, 269, 432, 499
LweI	GCATC	2 cut(s)	281, 303
MaeI	CTAG	2 cut(s)	35, 541
MaeIII	GTNAC	2 cut(s)	46, 114
MalI	GATC	3 cut(s)	60, 142, 252
MboI	GATC	3 cut(s)	58, 140, 250
MboII	GAAGA	3 cut(s)	104, 143, 516
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	4 cut(s)	54, 96, 217, 234
MnlI	CCTC	3 cut(s)	36, 216, 417
Mph1103I	ATGCAT	1 cut(s)	296
MroI	TCCGGA	1 cut(s)	485
MseI	TTAA	2 cut(s)	260, 369
MspI	CCGG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	58, 140, 250
NlaIII	CATG	2 cut(s)	349, 367
NsiI	ATGCAT	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	110, 434
PsiI	TTATAA	2 cut(s)	426, 480
PspEI	GGTNACC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	260, 369
Sau3AI	GATC	3 cut(s)	58, 140, 250
SetI	ASST	8 cut(s)	79, 177, 187, 210, 272, 400, 409, 494
SfaNI	GCATC	2 cut(s)	281, 303
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	4 cut(s)	54, 96, 217, 234
SsiI	CCGC	2 cut(s)	44, 51
SspMI	CTAG	2 cut(s)	35, 541
TaaI	ACNGT	1 cut(s)	374
TasI	AATT	4 cut(s)	54, 96, 217, 234
TfiI	GAWTC	2 cut(s)	110, 434
Tru1I	TTAA	2 cut(s)	260, 369
Tru9I	TTAA	2 cut(s)	260, 369
TscAI	CASTG	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	436
XspI	CTAG	2 cut(s)	35, 541
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.