Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

3022324 .. 3023132

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGTTGATCAATCTCAAGGAAGCACCAGAAGGATTGTTGGAACTTATGGTTACATGTCCCCAGAGTATGCAATGCATGGACAGTTCTCAGAGAAGTCTGATGTGTACAGTCTTGGTGTCTTAATCTTAGGGATTGTAACAGGCAAGAAAAACACTAGTTTCTATCAATCAGACAGTGGCGAAGATCTCTTAACATATGAAGATCCAAAGGAGAGACCTACTATGCAAACCATTGTTCTCATGCTAAGCAGTTACTCAGTTACTATGCCTTTGCCTGAAAAGCCAGCGTTTTTCCTGCATAGTAAAGCAGAGTTGAACATGCCATCAGTAGCCTCTGGATCATCATATCAACCCATTAGCAGCTCAGTCTCATATTCTGTTAATGAAGCTTCAATTACTGAATTATTCCCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr Stress-antifung

Protein Analysis

153

Amino Acids

16.76

Weight (kDa)

5.32

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 66	2.3e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 69	9.3e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	239, 388
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	358, 435
AhlI	ACTAGT	1 cut(s)	197
AluBI	AGCT	2 cut(s)	405, 431
AluI	AGCT	2 cut(s)	405, 431
Alw26I	GTCTC	2 cut(s)	250, 415
AlwI	GGATC	2 cut(s)	239, 388
ApeKI	GCWGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	250, 415
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	1 cut(s)	198
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	1 cut(s)	403
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	120
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	144, 312, 420
BseXI	GCAGC	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	250, 415
BsmFI	GGGAC	1 cut(s)	85
Bso31I	GGTCTC	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	49, 226, 244, 380
Bsp1720I	GCTNAGC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	143, 311, 419
BspPI	GGATC	2 cut(s)	239, 388
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	147
BssMI	GATC	4 cut(s)	49, 226, 244, 380
Bst4CI	ACNGT	3 cut(s)	126, 152, 218
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	5 cut(s)	130, 169, 287, 298, 406
BstKTI	GATC	4 cut(s)	52, 229, 247, 383
BstMAI	GTCTC	2 cut(s)	250, 415
BstMBI	GATC	4 cut(s)	49, 226, 244, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	2 cut(s)	100, 364
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	226, 244
BstYI	RGATCY	2 cut(s)	226, 244
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	97, 119, 283, 361
CviJI	RGCY	4 cut(s)	325, 374, 405, 431
CviKI_1	RGCY	4 cut(s)	325, 374, 405, 431
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	5 cut(s)	130, 169, 287, 298, 406
DpnI	GATC	4 cut(s)	51, 228, 246, 382
DpnII	GATC	4 cut(s)	49, 226, 244, 380
Eco31I	GGTCTC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	4 cut(s)	100, 122, 286, 364
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	4 cut(s)	96, 118, 282, 360
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	403
Hin1II	CATG	4 cut(s)	100, 122, 286, 364
HindIII	AAGCTT	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	19, 133, 142, 214
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	3 cut(s)	126, 152, 218
HpyCH4V	TGCA	4 cut(s)	113, 118, 268, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	5 cut(s)	130, 169, 287, 298, 406
Hsp92II	CATG	4 cut(s)	100, 122, 286, 364
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	49, 226, 244, 380
LpnPI	CCDG	7 cut(s)	82, 117, 168, 330, 339, 350, 363
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	92, 178, 293, 301
MalI	GATC	4 cut(s)	51, 228, 246, 382
MboI	GATC	4 cut(s)	49, 226, 244, 380
MboII	GAAGA	2 cut(s)	236, 254
MflI	RGATCY	2 cut(s)	226, 244
MluCI	AATT	2 cut(s)	435, 443
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	385
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	3 cut(s)	164, 233, 423
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	4 cut(s)	49, 226, 244, 380
NlaIII	CATG	4 cut(s)	100, 122, 286, 364
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	2 cut(s)	100, 364
PciI	ACATGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	404
PscI	ACATGT	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	226, 244
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	164, 233, 423
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	4 cut(s)	49, 226, 244, 380
SetI	ASST	3 cut(s)	262, 407, 433
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	2 cut(s)	435, 443
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	126, 152, 218
TaqI	TCGA	1 cut(s)	454
TasI	AATT	2 cut(s)	435, 443
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	3 cut(s)	164, 233, 423
Tru9I	TTAA	3 cut(s)	164, 233, 423
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	3 cut(s)	17, 255, 441
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	2 cut(s)	100, 364
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.