Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

65801460 .. 65815865

Gene Structure 14406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTTCCAAACAAGTTCTCATGGTCGCCGAGAAGCCCACCTGCGTTGACTTCTTCGGCGCCTCCTCTCGCCGCCGCTCGCTTCGCCAAGTTGTCGGTGTCGATGAAAGAGCGAACCAAGACGAAGTCGCTCTTGTTTGCTTCCCCGAGCTCCGATATATAGCTGTGAAAAGGCTCTCTAAGAGTTCTGGACAAGTTGATCATGAATTTGAAAATGAAGTCACCTTAGTTGCTCAACTTCAACACCGAAACTTACTCGATGGAACCTCCTCCTCGAATTCACCGGATTTTCGGCCTTGCCGTGGAAACCATCACGTCCCGTTGGTAGGCGGCGTCGAGGCGAAGGCTTGGGAGGTGGTTTTGCGTCGAACGGTGGCTGGATGGTGGAGAGCCCAGCAGGAGAAATTGGCTCTGTTTCGTCCCGCTCGGACGCAAGTGAGAGAGAAAGTATCGAGTTCCGGTTTCAAGAAATGGAAACCGGAAAATTGGAGGGATGATACAATTCCAAATATCATAGATCCCATGTTAACAACAGGCTCAAGATCTGAAATAATCAGATGCATCCACATTGGTTTATTATGTGTCCAAGAAAATGTGAATGACAGACCAACCATGGCTTCAGTTGTTTCCATGCTTAATAGTCATTCTCTCACAATCTCAGCACCTTCACGACCTCCATATTATTGGCATTATAACACTGATTCGGATACATCAGGGTCGGGATTCAGACTTACTGAGGCATCTGATAAATCCGAAAACTCAGTGTATGTGTCAAGAGGTATGGTTTCAGATATTACTGAACTACATCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

271

Amino Acids

30.54

Weight (kDa)

8.83

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	2 cut(s)	78, 425
AciI	CCGC	4 cut(s)	73, 76, 330, 423
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	2 cut(s)	206, 277
AcuI	CTGAAG	1 cut(s)	603
AcyI	GRCGYC	2 cut(s)	60, 333
AfiI	CCNNNNNNNGG	2 cut(s)	302, 326
AgsI	TTSAA	3 cut(s)	212, 242, 466
AjiI	CACGTC	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	2 cut(s)	151, 164
AluI	AGCT	2 cut(s)	151, 164
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	206, 277
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	214, 273
AvaI	CYCGRG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	153, 394
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	3 cut(s)	254, 318, 375
BceAI	ACGGC	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	1 cut(s)	814
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	3 cut(s)	73, 76, 331
BlsI	GCNGC	3 cut(s)	74, 77, 332
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	61, 265
BmsI	GCATC	3 cut(s)	548, 570, 749
BpuEI	CTTGAG	1 cut(s)	523
BsaHI	GRCGYC	2 cut(s)	60, 333
BsaJI	CCNNGG	2 cut(s)	301, 612
BsaWI	WCCGGW	3 cut(s)	283, 458, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 326
BseDI	CCNNGG	2 cut(s)	301, 612
BseGI	GGATG	4 cut(s)	386, 499, 561, 805
BseLI	CCNNNNNNNGG	2 cut(s)	302, 326
BseMII	CTCAG	3 cut(s)	672, 726, 774
BseRI	GAGGAG	3 cut(s)	55, 259, 262
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	284, 459, 479
BslFI	GGGAC	2 cut(s)	302, 405
BslI	CCNNNNNNNGG	2 cut(s)	302, 326
BsmFI	GGGAC	2 cut(s)	302, 405
BsnI	GGCC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	153, 394
Bsp143I	GATC	3 cut(s)	199, 517, 542
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	4 cut(s)	73, 76, 330, 423
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	3 cut(s)	671, 727, 773
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	61, 265
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	2 cut(s)	78, 425
BssECI	CCNNGG	2 cut(s)	301, 612
BssMI	GATC	3 cut(s)	199, 517, 542
BssNI	GRCGYC	2 cut(s)	60, 333
BssT1I	CCWWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	2 cut(s)	60, 333
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	5 cut(s)	180, 226, 658, 735, 760
BstDSI	CCRYGG	2 cut(s)	301, 612
BstF5I	GGATG	4 cut(s)	386, 499, 561, 805
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	202, 520, 545
BstMBI	GATC	3 cut(s)	199, 517, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	517, 542
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	2 cut(s)	517, 542
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	295
BtgI	CCRYGG	2 cut(s)	301, 612
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	386, 499, 561, 805
BtsIMutI	CAGTG	2 cut(s)	696, 768
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	62
CseI	GACGC	3 cut(s)	322, 353, 439
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	5 cut(s)	22, 203, 523, 613, 631
DdeI	CTNAG	5 cut(s)	180, 226, 658, 735, 760
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	3 cut(s)	201, 519, 544
DpnII	GATC	3 cut(s)	199, 517, 542
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	612
Eco24I	GRGCYC	2 cut(s)	153, 394
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	563
EcoT38I	GRGCYC	2 cut(s)	153, 394
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	5 cut(s)	25, 206, 526, 616, 634
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	302, 405
FatI	CATG	5 cut(s)	21, 202, 522, 612, 630
FauI	CCCGC	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	73, 76, 331
FokI	GGATG	4 cut(s)	393, 506, 548, 792
FriOI	GRGCYC	2 cut(s)	153, 394
Fsp4HI	GCNGC	3 cut(s)	73, 76, 331
FspBI	CTAG	1 cut(s)	814
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	73, 76, 331
GsaI	CCCAGC	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	3 cut(s)	284, 459, 479
HgaI	GACGC	3 cut(s)	322, 353, 439
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	2 cut(s)	60, 333
Hin1II	CATG	5 cut(s)	25, 206, 526, 616, 634
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	2 cut(s)	49, 528
HindII	GTYRAC	2 cut(s)	49, 528
HinfI	GANTC	2 cut(s)	701, 723
HpaI	GTTAAC	1 cut(s)	528
HpaII	CCGG	3 cut(s)	284, 459, 479
HphI	GGTGA	2 cut(s)	214, 273
Hpy166II	GTNNAC	2 cut(s)	49, 528
Hpy188I	TCNGA	9 cut(s)	155, 429, 547, 557, 706, 728, 745, 754, 790
Hpy188III	TCNNGA	7 cut(s)	189, 203, 466, 540, 669, 720, 774
Hpy8I	GTNNAC	2 cut(s)	49, 528
Hpy99I	CGWCG	2 cut(s)	338, 369
HpyAV	CCTTC	2 cut(s)	337, 675
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	5 cut(s)	180, 226, 658, 735, 760
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	60, 333
Hsp92II	CATG	5 cut(s)	25, 206, 526, 616, 634
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	199, 517, 542
LmnI	GCTCC	1 cut(s)	156
LweI	GCATC	3 cut(s)	548, 570, 749
MaeI	CTAG	1 cut(s)	814
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	201, 519, 544
MbiI	CCGCTC	2 cut(s)	78, 425
MboI	GATC	3 cut(s)	199, 517, 542
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	2 cut(s)	517, 542
MhlI	GDGCHC	2 cut(s)	153, 394
MluCI	AATT	5 cut(s)	206, 277, 404, 484, 501
Mly113I	GGCGCC	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	563
MseI	TTAA	2 cut(s)	527, 636
MspI	CCGG	3 cut(s)	284, 459, 479
MwoI	GCNNNNNNNGC	1 cut(s)	84
NarI	GGCGCC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	3 cut(s)	199, 517, 542
NlaIII	CATG	5 cut(s)	25, 206, 526, 616, 634
NlaIV	GGNNCC	2 cut(s)	61, 265
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	563
PagI	TCATGA	1 cut(s)	202
PaqCI	CACCTGC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	701, 723
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	74, 77, 332
PluTI	GGCGCC	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	61, 265
PsuI	RGATCY	2 cut(s)	517, 542
PsyI	GACNNNGTC	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	527, 636
SatI	GCNGC	3 cut(s)	73, 76, 331
Sau3AI	GATC	3 cut(s)	199, 517, 542
SduI	GDGCHC	2 cut(s)	153, 394
SfaNI	GCATC	3 cut(s)	548, 570, 749
SfoI	GGCGCC	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	5 cut(s)	206, 277, 404, 484, 501
SsiI	CCGC	4 cut(s)	73, 76, 330, 423
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	814
SstI	GAGCTC	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	6 cut(s)	102, 258, 275, 336, 367, 452
TasI	AATT	5 cut(s)	206, 277, 404, 484, 501
TauI	GCSGC	3 cut(s)	75, 78, 333
TfiI	GAWTC	2 cut(s)	701, 723
Tru1I	TTAA	2 cut(s)	527, 636
Tru9I	TTAA	2 cut(s)	527, 636
TscAI	CASTG	2 cut(s)	703, 768
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	120, 219, 231
TspRI	CASTG	2 cut(s)	703, 768
Tth111I	GACNNNGTC	1 cut(s)	125
XapI	RAATTY	2 cut(s)	206, 277
XspI	CTAG	1 cut(s)	814
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.