Rh6BG404100

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002863
Physical Location & Seq
Reverse (-)
63112294 .. 63113403
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG404100.1

Sequence Viewer

Length: 459 bp
ATGGCTCCAGAGTATGTATTGCGTGGACAGTTTTCTGTAAAGTCAGATGTTTTCAGCTTTGGCGTGCTTGTTTTGGAGATTATAAGTGGGGAGAAAAGAATTTCTTTCTGTCATGGAAGGAATGCTGAGGATCTTGTAAGCTATGTGTGGAGAAATTGGAGAGAAGGGACAGCTTCAAGTATAATAGATCATCTCATGACCTTGACGACTGATTCAAGAAGTCAAATAGTGAGATGCCTAAACATCGGATTATTATGTGTGGAACAAAGTATAGGCGATAGGCCAACCATGGCTTCAGTTATTCATATGCTTACTAGCAACTCTCTCACTACTCTCCCAGTACCATCAAAACCAGCTTTTCTGATTGGATCCGACATATCCGACTTAGATCAATCCCACAGTAACTGTATTCCAAAATCAGTGAATGAGGTTTCGATTACAGAACTATATCCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

5.75

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 67 4.8e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AclWI GGATC 3 cut(s) 138, 363, 376
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 342
AgsI TTSAA 2 cut(s) 177, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AluBI AGCT 4 cut(s) 57, 141, 173, 356
AluI AGCT 4 cut(s) 57, 141, 173, 356
AlwI GGATC 3 cut(s) 138, 363, 376
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 99
BamHI GGATCC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 352
BfaI CTAG 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 6, 370
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 338
BshFI GGCC 1 cut(s) 283
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 130, 187, 368, 388
Bsp19I CCATGG 1 cut(s) 288
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 6, 370
BspPI GGATC 3 cut(s) 138, 363, 376
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 4 cut(s) 130, 187, 368, 388
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 30, 401, 407
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 126, 385
BstDSI CCRYGG 1 cut(s) 288
BstKTI GATC 4 cut(s) 133, 190, 371, 391
BstMBI GATC 4 cut(s) 130, 187, 368, 388
BstX2I RGATCY 2 cut(s) 130, 368
BstYI RGATCY 2 cut(s) 130, 368
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 405
CciI TCATGA 1 cut(s) 195
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 113, 196, 289
CviJI RGCY 7 cut(s) 5, 57, 141, 173, 283, 293, 356
CviKI_1 RGCY 7 cut(s) 5, 57, 141, 173, 283, 293, 356
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 126, 385
DpnI GATC 4 cut(s) 132, 189, 370, 390
DpnII GATC 4 cut(s) 130, 187, 368, 388
Eco130I CCWWGG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 116, 199, 292
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 112, 195, 288
FauNDI CATATG 1 cut(s) 306
FspBI CTAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 283
Hin1II CATG 3 cut(s) 116, 199, 292
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 5 cut(s) 46, 248, 363, 373, 382
Hpy188III TCNNGA 3 cut(s) 8, 196, 216
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 111, 158
HpyCH4III ACNGT 3 cut(s) 30, 401, 407
HpyF3I CTNAG 2 cut(s) 126, 385
Hsp92II CATG 3 cut(s) 116, 199, 292
Kzo9I GATC 4 cut(s) 130, 187, 368, 388
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 21, 351, 366
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 401
MalI GATC 4 cut(s) 132, 189, 370, 390
MboI GATC 4 cut(s) 130, 187, 368, 388
MflI RGATCY 2 cut(s) 130, 368
MluCI AATT 2 cut(s) 99, 154
MmeI TCCRAC 2 cut(s) 396, 405
MnlI CCTC 2 cut(s) 121, 421
Mva1269I GAATGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 288
NdeI CATATG 1 cut(s) 306
NdeII GATC 4 cut(s) 130, 187, 368, 388
NlaIII CATG 3 cut(s) 116, 199, 292
NlaIV GGNNCC 2 cut(s) 6, 370
PagI TCATGA 1 cut(s) 195
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 6, 370
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 2 cut(s) 130, 368
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
Sau3AI GATC 4 cut(s) 130, 187, 368, 388
SetI ASST 6 cut(s) 59, 143, 175, 203, 358, 432
SfaNI GCATC 1 cut(s) 224
Sse9I AATT 2 cut(s) 99, 154
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 30, 401, 407
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 99, 154
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 426
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 426
XapI RAATTY 1 cut(s) 99
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.