Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032629.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

918 .. 1541

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032629.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgttgttgttgatatgcagtggatatatggctcctgagtatgtaatgcgcggacatttttctgtgaagtccgatgtctatagctttggtgtgttggttttggagatagtaagcggacagaaaaatagctcttttcatcatgaaggaaatgtggaggatcttctaggctatgcatggaatagttggaaggaggggacatcttcaaatttgatagatcccatgttgaggactggttcgaggcctgaaatagtgagatgcatccatattggattgttatgtgttcaacaaagcataggtgacagaccaaccatggctgcagtcattcaaatgcttaccagcaactctgatgatctcccagtaccctcacaaccagcattttatatgtataatcaaggcattggatcctcatccggcatgtcattgggaattgagagttactcaggattgacatggtctgatcaatccaaattaagcgactctgccaacaaaacctatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

166

Amino Acids

18.2

Weight (kDa)

5.2

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	51, 114
AclWI	GGATC	4 cut(s)	165, 209, 396, 409
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	204, 284, 326
AluBI	AGCT	2 cut(s)	84, 129
AluI	AGCT	2 cut(s)	84, 129
AlwI	GGATC	4 cut(s)	165, 209, 396, 409
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	79, 315
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	33, 403
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	245, 267
BmuI	ACTGGG	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BsaBI	GATNNNNATC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	235, 356
Bse8I	GATNNNNATC	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	258, 407
BseJI	GATNNNNATC	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	27, 453
BseNI	ACTGG	2 cut(s)	235, 356
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	157, 214, 349, 401, 457
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	2 cut(s)	51, 114
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	28, 452
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	33, 403
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	4 cut(s)	165, 209, 396, 409
BsrI	ACTGG	2 cut(s)	235, 356
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	5 cut(s)	157, 214, 349, 401, 457
BssT1I	CCWWGG	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	36, 439
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	258, 407
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	5 cut(s)	160, 217, 352, 404, 460
BstMBI	GATC	5 cut(s)	157, 214, 349, 401, 457
BstNSI	RCATGY	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	79, 315
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	3 cut(s)	157, 214, 401
BstYI	RGATCY	3 cut(s)	157, 214, 401
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	258, 407
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	6 cut(s)	140, 174, 220, 310, 415, 450
CviJI	RGCY	6 cut(s)	32, 84, 129, 168, 241, 314
CviKI_1	RGCY	6 cut(s)	32, 84, 129, 168, 241, 314
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	36, 439
DpnI	GATC	5 cut(s)	159, 216, 351, 403, 459
DpnII	GATC	5 cut(s)	157, 214, 349, 401, 457
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	2 cut(s)	175, 260
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	6 cut(s)	143, 177, 223, 313, 418, 453
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	6 cut(s)	139, 173, 219, 309, 414, 449
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	2 cut(s)	245, 394
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	143, 177, 223, 313, 418, 453
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	73, 346, 457
Hpy188III	TCNNGA	3 cut(s)	35, 140, 441
HpyAV	CCTTC	2 cut(s)	137, 181
HpyCH4V	TGCA	4 cut(s)	18, 173, 258, 317
HpyF3I	CTNAG	2 cut(s)	36, 439
Hsp92II	CATG	6 cut(s)	143, 177, 223, 313, 418, 453
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	157, 214, 349, 401, 457
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	48, 216, 255, 349, 369, 384, 424, 426
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	245, 267
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	296, 434
MalI	GATC	5 cut(s)	159, 216, 351, 403, 459
MboI	GATC	5 cut(s)	157, 214, 349, 401, 457
MboII	GAAGA	2 cut(s)	152, 192
MflI	RGATCY	3 cut(s)	157, 214, 401
MluCI	AATT	3 cut(s)	205, 426, 467
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	6 cut(s)	148, 184, 219, 231, 373, 415
Mph1103I	ATGCAT	2 cut(s)	175, 260
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	5 cut(s)	157, 214, 349, 401, 457
NlaIII	CATG	6 cut(s)	143, 177, 223, 313, 418, 453
NlaIV	GGNNCC	2 cut(s)	33, 403
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	2 cut(s)	175, 260
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	241
PflFI	GACNNNGTC	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	33, 403
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	3 cut(s)	157, 214, 401
PsyI	GACNNNGTC	1 cut(s)	451
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	5 cut(s)	157, 214, 349, 401, 457
SchI	GAGTC	1 cut(s)	470
SetI	ASST	4 cut(s)	86, 131, 298, 494
SfaNI	GCATC	2 cut(s)	245, 267
SfcI	CTRYAG	2 cut(s)	79, 315
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	205, 426, 467
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	51, 114
SspMI	CTAG	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	309
TaqI	TCGA	1 cut(s)	236
TasI	AATT	3 cut(s)	205, 426, 467
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	125, 156
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	2 cut(s)	175, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.