Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

10235648 .. 10237273

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAACCCAAAAATTTCTGATTTTGGAATGGCAAGAATTTTCGGGGACAATGACATCAGAGGAAAAACAAACCGGGTTGTTGGTACATTTGGTTACATGTCTCCTGAGTATGCAATGGGCGGCCTCTTTTCTAAAAAATCCGATGTCTTTAGCTTTGGGGTGATCTTGTTAGAGATCATAAGTGGTGAGAAGAACATTGCATTCTTTGAGGCTGATCACACCCTGAACTTACTCAGCAAAGCTTGGCATTTGTTGAAAAAAAGGAAGCAGCATGGAGTTAATGGATCCGACACTGTGTGCTTCTTGTTCGAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

8.79

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 66	4.8e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 84	1e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	279, 292
AcsI	RAATTY	2 cut(s)	12, 36
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	2 cut(s)	153, 242
AluI	AGCT	2 cut(s)	153, 242
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	279, 292
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	12, 36
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	172, 197
BamHI	GGATCC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	121, 269
BlsI	GCNGC	2 cut(s)	122, 270
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	120, 195
BseMI	GCAATG	2 cut(s)	120, 195
BseMII	CTCAG	2 cut(s)	96, 247
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	162, 174, 214, 284
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	97, 246
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	279, 292
BsrDI	GCAATG	2 cut(s)	120, 195
BssMI	GATC	4 cut(s)	162, 174, 214, 284
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	105, 233
BstKTI	GATC	4 cut(s)	165, 177, 217, 287
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	4 cut(s)	162, 174, 214, 284
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	2 cut(s)	97, 272
CviJI	RGCY	4 cut(s)	123, 153, 212, 242
CviKI_1	RGCY	4 cut(s)	123, 153, 212, 242
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	2 cut(s)	105, 233
DpnI	GATC	4 cut(s)	164, 176, 216, 286
DpnII	GATC	4 cut(s)	162, 174, 214, 284
DraIII	CACNNNGTG	1 cut(s)	297
FaeI	CATG	2 cut(s)	100, 275
FaiI	YATR	4 cut(s)	98, 111, 179, 273
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	96, 271
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	121, 269
Fsp4HI	GCNGC	2 cut(s)	121, 269
GluI	GCNGC	2 cut(s)	121, 269
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	2 cut(s)	100, 275
HindIII	AAGCTT	1 cut(s)	240
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	2 cut(s)	172, 197
Hpy188I	TCNGA	4 cut(s)	19, 59, 142, 289
Hpy188III	TCNNGA	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	113, 200
HpyF3I	CTNAG	2 cut(s)	105, 233
Hsp92II	CATG	2 cut(s)	100, 275
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	162, 174, 214, 284
LpnPI	CCDG	3 cut(s)	86, 117, 236
Lsp1109I	GCAGC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	4 cut(s)	164, 176, 216, 286
MboI	GATC	4 cut(s)	162, 174, 214, 284
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	2 cut(s)	12, 36
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	3 cut(s)	53, 134, 202
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	4 cut(s)	162, 174, 214, 284
NlaIII	CATG	2 cut(s)	100, 275
NlaIV	GGNNCC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	122, 270
PscI	ACATGT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	121, 269
Sau3AI	GATC	4 cut(s)	162, 174, 214, 284
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	2 cut(s)	155, 244
Sse9I	AATT	2 cut(s)	12, 36
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	12, 36
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	12, 36
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.