Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

27906515 .. 27907043

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTTCCAGCTCCAGCTACGTACTCCAACGACTCCAGAAACTCCATCTCCACCTGAGCGAGGAAAGAAGAGTAACACAAAAATAAGTATCATCATCATAATTGTGGTTGTGATTGCTTTTGTCACTATGATTCTCAGTGGCATATGCATTTTCTTAAGAGTCAAGCAGCCAAGGGTAAAACTTGACGATGATACTTTGGAAGAAATTAGTCTCGTGAAATCGTTACAATACGACTTTGAAGATATTAGATCGATCAGCAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

88

Amino Acids

10.05

Weight (kDa)

8.93

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflII	CTTAAG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	2 cut(s)	10, 16
AluI	AGCT	2 cut(s)	10, 16
Alw26I	GTCTC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	154
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	45, 148
BseXI	GCAGC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	248, 252
BspCNI	CTCAG	2 cut(s)	46, 147
BspDI	ATCGAT	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	2 cut(s)	248, 252
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	54, 134
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	251, 255
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	248, 252
BstSNI	TACGTA	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	3 cut(s)	10, 16, 169
CviKI_1	RGCY	3 cut(s)	10, 16, 169
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	54, 134
DpnI	GATC	2 cut(s)	250, 254
DpnII	GATC	2 cut(s)	248, 252
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco105I	TACGTA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	170
FaiI	YATR	4 cut(s)	98, 128, 143, 145
FauNDI	CATATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	18
HinfI	GANTC	3 cut(s)	31, 130, 159
Hpy188III	TCNNGA	2 cut(s)	35, 214
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	54, 134
HpySE526I	ACGT	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	248, 252
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	20, 26, 48, 66
Lsp1109I	GCAGC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	3 cut(s)	71, 121, 222
MalI	GATC	2 cut(s)	250, 254
MboI	GATC	2 cut(s)	248, 252
MboII	GAAGA	3 cut(s)	79, 212, 251
MluCI	AATT	2 cut(s)	99, 204
MlyI	GAGTC	2 cut(s)	25, 168
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	2 cut(s)	248, 252
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	2 cut(s)	25, 167
PpsI	GAGTC	2 cut(s)	25, 167
Ppu21I	YACGTR	1 cut(s)	20
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	248, 252
SchI	GAGTC	2 cut(s)	25, 168
SetI	ASST	4 cut(s)	12, 18, 22, 55
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SnaBI	TACGTA	1 cut(s)	20
Sse9I	AATT	2 cut(s)	99, 204
StyI	CCWWGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	99, 204
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	121
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.