Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

62292365 .. 62292953

Gene Structure 589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCCAGAGTATGTAATGCGTGGACAATTTTCGGTTAAGTCTGATGTCTTTAGCTTTGGTGTCTTGGTTTTGGAGATAGTAAGTGGACAAAAGAATAGTTCTTTTCGTAATAGAGGAAATGTGGAGGATCTTCTGAGCTATGCATGGAAAAATTGGAGAGCAGATACGGCTTCAAATATAATAGATCCCATCTTGAGTTCTGGTTCAAGAACTGAGATGATGAGATGCATCAACATTGGATTGTTATGTGTGCAACAAAATATGGCTGATAGGCCAACTATGACTTCAGTTATTCTCATGCTCACTGGCAACTCTCTCTCTCTTCCAGTACCCTCACAGCCAGCATTTTTTATGGGTGCATCCGACTTTTCAAAGGTTGTAGAATTGGATCAAGCTCAAAGCAGCAGTTCTGTCCAAAAATCTATTAATGAGGCTTCAATTACTGAACTATCTCCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

155

Amino Acids

16.91

Weight (kDa)

5.4

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 99	6.3e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	138, 182, 399
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	177, 210, 375, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	3 cut(s)	57, 141, 398
AluI	AGCT	3 cut(s)	57, 141, 398
AlwI	GGATC	3 cut(s)	138, 182, 399
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	405
AseI	ATTAAT	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	218, 240, 371
BpuEI	CTTGAG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	313, 329
BseGI	GGATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	128, 207
BseNI	ACTGG	2 cut(s)	313, 329
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	130, 187, 391
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	129, 208
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	138, 182, 399
BsrI	ACTGG	2 cut(s)	313, 329
BssMI	GATC	3 cut(s)	130, 187, 391
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	137, 216
BstF5I	GGATG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	133, 190, 394
BstMBI	GATC	3 cut(s)	130, 187, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	130, 187
BstYI	RGATCY	2 cut(s)	130, 187
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	147, 301
CviJI	RGCY	9 cut(s)	5, 57, 141, 173, 269, 277, 343, 398, 437
CviKI_1	RGCY	9 cut(s)	5, 57, 141, 173, 269, 277, 343, 398, 437
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	137, 216
DpnI	GATC	3 cut(s)	132, 189, 393
DpnII	GATC	3 cut(s)	130, 187, 391
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	273
EcoT22I	ATGCAT	2 cut(s)	148, 233
FaeI	CATG	2 cut(s)	150, 304
FaiI	YATR	9 cut(s)	15, 144, 148, 182, 250, 266, 284, 302, 356
FatI	CATG	2 cut(s)	146, 300
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	150, 304
Hpy166II	GTNNAC	2 cut(s)	26, 89
Hpy188I	TCNGA	3 cut(s)	46, 138, 367
Hpy188III	TCNNGA	3 cut(s)	8, 196, 210
Hpy8I	GTNNAC	2 cut(s)	26, 89
HpyCH4V	TGCA	4 cut(s)	146, 231, 256, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	137, 216
Hsp92II	CATG	2 cut(s)	150, 304
Kzo9I	GATC	3 cut(s)	130, 187, 391
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	21, 189, 294, 342, 357
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	3 cut(s)	218, 240, 371
MalI	GATC	3 cut(s)	132, 189, 393
MboI	GATC	3 cut(s)	130, 187, 391
MboII	GAAGA	2 cut(s)	125, 317
MflI	RGATCY	2 cut(s)	130, 187
MluCI	AATT	4 cut(s)	29, 154, 386, 441
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	110, 121, 346, 427
Mph1103I	ATGCAT	2 cut(s)	148, 233
MseI	TTAA	2 cut(s)	39, 429
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	3 cut(s)	130, 187, 391
NlaIII	CATG	2 cut(s)	150, 304
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	2 cut(s)	148, 233
PkrI	GCNGC	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	130, 187
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	39, 429
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	3 cut(s)	130, 187, 391
SetI	ASST	4 cut(s)	59, 143, 381, 400
SfaNI	GCATC	3 cut(s)	218, 240, 371
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	29, 154, 386, 441
TasI	AATT	4 cut(s)	29, 154, 386, 441
Tru1I	TTAA	2 cut(s)	39, 429
Tru9I	TTAA	2 cut(s)	39, 429
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	405
TspRI	CASTG	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	148, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.