Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

27782456 .. 27783050

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGAGATGCATCCAAAAATATCTGATTTTGGCATGGCCAGGATCTTTGCTTTTTTGGATCGATCAAACTCAAGCAAACACAAATAGAATTGTCGGAACATATGGTTATATGTCTCCTGAGTATGCAATGCATGGACGTTTTTCTGTCAAGTCCGATATGTATAGTTTCGGTGTTTTACTACTAGAAATCATCACTGGCAAGAAGAACAGTTACTTCTTTCAGACCGATGCAGCTGAGGACCTCCTGAGCCATGCTTGGAAGTTATGGAGAGATGGGGCACTTTTGGAATTGTTGGATCCGTGTCTGGGGGACTCTTATTCGAGGATTGAAGTAATCAGATGCATCCACATCAGCTTACTTTGTGTTCAGGAACGATCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

6.26

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	52, 68, 293, 306, 372
AcoI	YGGCCR	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	236, 357
AluI	AGCT	2 cut(s)	236, 357
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	5 cut(s)	52, 68, 293, 306, 372
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	4 cut(s)	21, 220, 332, 354
Bpu10I	CCTNAGC	2 cut(s)	237, 248
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	63
BseGI	GGATG	2 cut(s)	12, 345
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	111, 228, 239
BseNI	ACTGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	44, 60, 64, 298, 377
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	3 cut(s)	112, 229, 240
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	5 cut(s)	52, 68, 293, 306, 372
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	5 cut(s)	44, 60, 64, 298, 377
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	120, 237, 248
BstF5I	GGATG	2 cut(s)	12, 345
BstKTI	GATC	5 cut(s)	47, 63, 67, 301, 380
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	5 cut(s)	44, 60, 64, 298, 377
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	44, 298
BstYI	RGATCY	2 cut(s)	44, 298
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	12, 345
BtsIMutI	CAGTG	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	63
CviAII	CATG	3 cut(s)	36, 134, 254
CviJI	RGCY	4 cut(s)	40, 236, 252, 357
CviKI_1	RGCY	4 cut(s)	40, 236, 252, 357
DdeI	CTNAG	3 cut(s)	120, 237, 248
DpnI	GATC	5 cut(s)	46, 62, 66, 300, 379
DpnII	GATC	5 cut(s)	44, 60, 64, 298, 377
EaeI	YGGCCR	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	3 cut(s)	14, 135, 347
FaeI	CATG	3 cut(s)	39, 137, 257
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	35, 133, 253
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	39, 137, 257
HinfI	GANTC	1 cut(s)	314
Hpy188I	TCNGA	5 cut(s)	27, 98, 157, 225, 341
Hpy188III	TCNNGA	3 cut(s)	119, 247, 371
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	12, 128, 133, 233, 345
HpyF3I	CTNAG	3 cut(s)	120, 237, 248
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	39, 137, 257
Kzo9I	GATC	5 cut(s)	44, 60, 64, 298, 377
LpnPI	CCDG	7 cut(s)	27, 54, 132, 183, 260, 293, 356
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	4 cut(s)	21, 220, 332, 354
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	46, 62, 66, 300, 379
MboI	GATC	5 cut(s)	44, 60, 64, 298, 377
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	2 cut(s)	44, 298
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	2 cut(s)	90, 290
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	76, 276
MnlI	CCTC	3 cut(s)	232, 254, 318
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	3 cut(s)	14, 135, 347
MscI	TGGCCA	1 cut(s)	40
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	5 cut(s)	44, 60, 64, 298, 377
NlaIII	CATG	3 cut(s)	39, 137, 257
NlaIV	GGNNCC	1 cut(s)	300
NsiI	ATGCAT	3 cut(s)	14, 135, 347
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	44, 298
PvuII	CAGCTG	1 cut(s)	236
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	5 cut(s)	44, 60, 64, 298, 377
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	4 cut(s)	142, 238, 246, 359
SfaNI	GCATC	4 cut(s)	21, 220, 332, 354
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	90, 290
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	63, 323
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	90, 290
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	241
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	3 cut(s)	14, 135, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.