Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003102.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

3427 .. 4154

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003102.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttggctttgcttgctgcttggttagcgaggcttgcacactcgaacactggacttccttggacaatccttgctgcccttcgacactcgagatatatggctccagagtatgtcatgcgtggacagttttctgtcaagtctgatgcctatagctccggtgtgttagttctggagatagtgagtggacagaaaaacagttctttcagtcatgaagggaatgtggaagatcttctaagctatgcatggagaagctggagggaagggtcagcagcttcaaatctaatagataacagcttgatgactggttcaagaactgaaataatgaaatgcatccatattggattactatgtgtacaacaaaatataggtgataggccaaccatggcttcggttattcacatgcttactagcaactccctcactcttccagtaccctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

7.86

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	354, 432
AgsI	TTSAA	2 cut(s)	276, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	5 cut(s)	153, 237, 252, 272, 294
AluI	AGCT	5 cut(s)	153, 237, 252, 272, 294
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	17, 74, 269
Asp700I	GAANNNNTTC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	88
BbvI	GCAGC	3 cut(s)	4, 61, 281
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	18, 75, 270
BlsI	GCNGC	3 cut(s)	19, 76, 271
BmeT110I	CYCGRG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	2 cut(s)	133, 339
BpmI	CTGGAG	3 cut(s)	87, 191, 274
BsaJI	CCNNGG	2 cut(s)	59, 381
BsaWI	WCCGGW	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	55, 307, 428
BseDI	CCNNGG	2 cut(s)	59, 381
BseGI	GGATG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	55, 307, 428
BseXI	GCAGC	3 cut(s)	4, 61, 281
BshFI	GGCC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	55, 307, 428
BssECI	CCNNGG	2 cut(s)	59, 381
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	59, 381
Bst4CI	ACNGT	2 cut(s)	126, 197
Bst6I	CTCTTC	1 cut(s)	429
BstAUI	TGTACA	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	15, 36
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	4, 61, 281
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	15, 36
CciI	TCATGA	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	353, 431
CviAII	CATG	5 cut(s)	115, 209, 243, 382, 400
CviQI	GTAC	2 cut(s)	353, 431
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	59, 381
Eco88I	CYCGRG	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	59, 381
EcoT22I	ATGCAT	2 cut(s)	244, 332
ErhI	CCWWGG	2 cut(s)	59, 381
FaeI	CATG	5 cut(s)	118, 212, 246, 385, 403
FatI	CATG	5 cut(s)	114, 208, 242, 381, 399
Fnu4HI	GCNGC	3 cut(s)	18, 75, 270
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	18, 75, 270
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	18, 75, 270
GsuI	CTGGAG	3 cut(s)	87, 191, 274
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	5 cut(s)	118, 212, 246, 385, 403
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	122, 185, 353
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	5 cut(s)	90, 104, 170, 209, 309
Hpy8I	GTNNAC	3 cut(s)	122, 185, 353
HpyAV	CCTTC	3 cut(s)	89, 206, 254
HpyCH4III	ACNGT	2 cut(s)	126, 197
HpyCH4V	TGCA	3 cut(s)	38, 242, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	118, 212, 246, 385, 403
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	106, 158
LpnPI	CCDG	6 cut(s)	36, 117, 155, 169, 238, 288
Lsp1109I	GCAGC	3 cut(s)	4, 61, 281
LweI	GCATC	2 cut(s)	133, 339
MaeI	CTAG	1 cut(s)	408
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	3 cut(s)	221, 236, 416
MflI	RGATCY	1 cut(s)	226
MnlI	CCTC	3 cut(s)	24, 249, 428
Mph1103I	ATGCAT	2 cut(s)	244, 332
MroXI	GAANNNNTTC	1 cut(s)	228
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	14, 26, 35
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	118, 212, 246, 385, 403
NlaIV	GGNNCC	1 cut(s)	102
NsiI	ATGCAT	2 cut(s)	244, 332
NspI	RCATGY	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	88
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	19, 76, 271
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	354, 432
RsaNI	GTAC	2 cut(s)	353, 431
SatI	GCNGC	3 cut(s)	18, 75, 270
Sau3AI	GATC	1 cut(s)	226
SetI	ASST	6 cut(s)	155, 239, 254, 274, 296, 370
SfaNI	GCATC	2 cut(s)	133, 339
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	59, 381
TaaI	ACNGT	2 cut(s)	126, 197
TaqI	TCGA	3 cut(s)	44, 82, 89
TatI	WGTACW	1 cut(s)	352
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	3 cut(s)	17, 74, 269
TspDTI	ATGAA	2 cut(s)	225, 338
TspRI	CASTG	1 cut(s)	55
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	2 cut(s)	244, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.