Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002206.1

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

154386 .. 154919

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002206.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgaaccctaaaattgcagattttggtactgcaagattgtttgtcaagggtcaaactcaaggagatgcaaagactattgttgggaccgatggatatatggcgccagaatatgtaaatcacggtcgcttttctgtcaaatcagatgtctttagttttggcgtgatagttcttgagatagtcagcggtaagaagattagtagttttcggattggtgacaatgcagaggaccttttaagctatgtgagcctggagaaattggaggcaggatacaattttaaatatcatagatcccatgttgacaacaggctcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

105

Amino Acids

11.72

Weight (kDa)

9.19

Isoelectric Point (pI)

9.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AlwI	GGATC	1 cut(s)	282
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	84, 226
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	84, 226
BanI	GGYRCC	1 cut(s)	100
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	84, 226
BmgT120I	GGNCC	2 cut(s)	84, 226
BmiI	GGNNCC	2 cut(s)	85, 102
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	3 cut(s)	42, 191, 293
BsaHI	GRCGYC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	85, 102
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	100
BssMI	GATC	1 cut(s)	287
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	84, 226
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	3 cut(s)	237, 246, 307
CviKI_1	RGCY	3 cut(s)	237, 246, 307
CviQI	GTAC	1 cut(s)	27
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DraI	TTTAAA	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	84, 226
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaeI	CATG	1 cut(s)	296
FaiI	YATR	6 cut(s)	96, 98, 111, 240, 285, 294
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	292
GlaI	GCGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	104
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	142, 207
Hpy188III	TCNNGA	2 cut(s)	170, 310
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	17, 32, 68, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	117, 233, 249, 260, 289
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	12, 254, 271
Mly113I	GGCGCC	1 cut(s)	101
MnlI	CCTC	2 cut(s)	217, 253
MseI	TTAA	2 cut(s)	233, 276
MspA1I	CMGCKG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	243
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	85, 102
NmuCI	GTSAC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	85, 102
PspPI	GGNCC	2 cut(s)	84, 226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	233, 276
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	2 cut(s)	84, 226
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	2 cut(s)	231, 239
SfaNI	GCATC	1 cut(s)	55
SfoI	GGCGCC	1 cut(s)	102
SinI	GGWCC	2 cut(s)	84, 226
SmlI	CTYRAG	3 cut(s)	57, 170, 308
SmoI	CTYRAG	3 cut(s)	57, 170, 308
Sse9I	AATT	3 cut(s)	12, 254, 271
SsiI	CCGC	1 cut(s)	183
SspDI	GGCGCC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	122
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	12, 254, 271
Tru1I	TTAA	2 cut(s)	233, 276
Tru9I	TTAA	2 cut(s)	233, 276
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	84, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.