Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

1209272 .. 1209577

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1013600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGATGCATCCACATCGGCTTACTTTGCGTCCAAGAAAATGTGGCTAGCAGACCAACCATGGCTTCAATTGTTTCGATGCTTAATTGTCATTCTGTCACACTCTCATTATTACCTTCAAAACCTGCATATTACTTGCATAACAGTGAAAAAGACACCACGGAAGGAACAAAATCATATGAATCTAAAAATTCTGCTTATGTGTCGATAAATGAGGACTCAAACATTACAAGCCGTATCCTCGTTAGTGGGGCTGATTATAAATGTAGGCTTTCTGGTTTATTTTTAAGCGCAAGTTTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

7.68

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	261, 304
Acc36I	ACCTGC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	69, 120
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	219
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	248
BmsI	GCATC	2 cut(s)	18, 69
BmtI	GCTAGC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	60, 159
BseDI	CCNNGG	2 cut(s)	60, 159
BseGI	GGATG	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	60, 159
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	49
BstDSI	CCRYGG	2 cut(s)	60, 159
BstF5I	GGATG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	248
BtgI	CCRYGG	2 cut(s)	60, 159
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	293
CseI	GACGC	1 cut(s)	19
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	21, 47, 65, 234, 254, 271
CviKI_1	RGCY	6 cut(s)	21, 47, 65, 234, 254, 271
Eco130I	CCWWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	8 cut(s)	62, 130, 141, 178, 180, 201, 261, 304
FatI	CATG	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	178
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	292
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	182, 218
HpyAV	CCTTC	2 cut(s)	126, 158
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	9, 128, 139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	291
LpnPI	CCDG	2 cut(s)	138, 261
LweI	GCATC	2 cut(s)	18, 69
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	97
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	3 cut(s)	69, 85, 190
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	208, 251
Mph1103I	ATGCAT	1 cut(s)	11
MseI	TTAA	2 cut(s)	84, 287
MslI	CAYNNNNRTG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PsiI	TTATAA	2 cut(s)	261, 304
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	84, 287
SchI	GAGTC	1 cut(s)	212
SetI	ASST	2 cut(s)	118, 127
SfaNI	GCATC	2 cut(s)	18, 69
SgeI	CNNG	9 cut(s)	47, 60, 73, 137, 148, 172, 243, 254, 288
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	3 cut(s)	69, 85, 190
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	77, 206
TasI	AATT	3 cut(s)	69, 85, 190
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	84, 287
Tru9I	TTAA	2 cut(s)	84, 287
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.