Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

47290928 .. 47293277

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGAAGTGTAGATTCCCTGCAATTTGACTTTGACTCCATTAAAGCTGCCACTAATAACTTCTCTGAAGAAAATAAGCTTGCACGAGGAGGATTTGGTGCTGTTTACAAGGGTAGGCTATTCAATCACGAAGATGTAGCCGTGAAAAGGCTTTCCAAGGATTCTGCACAAGGAGATTTAGAATTCAAAAATGAGGTCTTGTTAGTAGCCAAGCTGCAACACCGATTAGTTAGGCTCCTTATAGGTTTCTGCTTGAAAGGAGCTGAAAGACTTCTTGTTTACGAGTTTGTCCCAAACGCAAGTCTAAACCAATTCATATTCGAGCATGTCATGCGTGGACAGTTTTCTGTCAAGTCTGATGCCTATAGCTCCGGTGCATGGAGAAGCTGGAGGGAAGGGTCAGCAGCTTCAAATCTAATAGATAACAGCTTGATGACTGGTTCAAGAACTGAAATAATGAAATGCATCCATATCGGATTACTATGTGTACAACAAAATATAGGTGATAGGCCAACCATAGCTTCGGTTATTCACATGCTTACTAGCAACTCCCTCACTCTTCCAGTACCCTCACAACCATCATTTCTTATGATTGGATCCGGCATGCCAGGAATCCTGGGTTCAAGTCGATCTAAGAGCAACTCTGTCCTAAACTCAGTAAGTGAGGCTTCGATCACAGAACTATCTCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

231

Amino Acids

25.37

Weight (kDa)

9.05

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 110	5.5e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 114	2.6e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	591, 604
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	489, 567
AfiI	CCNNNNNNNGG	2 cut(s)	147, 378
AgsI	TTSAA	6 cut(s)	124, 187, 256, 411, 444, 624
AjnI	CCWGG	2 cut(s)	607, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	9 cut(s)	47, 79, 214, 263, 369, 387, 407, 429, 521
AluI	AGCT	9 cut(s)	47, 79, 214, 263, 369, 387, 407, 429, 521
AlwI	GGATC	2 cut(s)	591, 604
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	47, 214, 404
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
Asp700I	GAANNNNTTC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	515
BamHI	GGATCC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	34, 201, 416
BccI	CCATC	1 cut(s)	586
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	2 cut(s)	609, 617
BfaI	CTAG	2 cut(s)	543, 694
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	3 cut(s)	48, 215, 405
BlsI	GCNGC	3 cut(s)	49, 216, 406
Bme1390I	CCNGG	2 cut(s)	609, 617
BmiI	GGNNCC	2 cut(s)	236, 598
BmrFI	CCNGG	2 cut(s)	609, 617
BmsI	GCATC	2 cut(s)	349, 474
BpmI	CTGGAG	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	156, 616
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 378
Bse1I	ACTGG	2 cut(s)	442, 563
BseBI	CCWGG	2 cut(s)	609, 617
BseDI	CCNNGG	2 cut(s)	156, 616
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	147, 378
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	442, 563
BseRI	GAGGAG	2 cut(s)	102, 678
BseXI	GCAGC	3 cut(s)	34, 201, 416
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	372, 600
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	147, 378
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	3 cut(s)	596, 629, 672
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	668
BspLI	GGNNCC	2 cut(s)	236, 598
BspPI	GGATC	2 cut(s)	591, 604
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	442, 563
BssECI	CCNNGG	2 cut(s)	156, 616
BssMI	GATC	3 cut(s)	596, 629, 672
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	609, 617
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	81, 605
BstDEI	CTNAG	2 cut(s)	633, 655
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	3 cut(s)	599, 632, 675
BstMBI	GATC	3 cut(s)	596, 629, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	2 cut(s)	609, 617
BstNSI	RCATGY	3 cut(s)	329, 538, 607
BstSCI	CCNGG	2 cut(s)	607, 615
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	34, 201, 416
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	81, 605
Csp6I	GTAC	2 cut(s)	488, 566
CviAII	CATG	5 cut(s)	326, 331, 378, 535, 604
CviQI	GTAC	2 cut(s)	488, 566
DdeI	CTNAG	2 cut(s)	633, 655
DpnI	GATC	3 cut(s)	598, 631, 674
DpnII	GATC	3 cut(s)	596, 629, 672
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	607, 615
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	5 cut(s)	329, 334, 381, 538, 607
FalI	AAGNNNNNCTT	2 cut(s)	652, 684
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	5 cut(s)	325, 330, 377, 534, 603
Fnu4HI	GCNGC	3 cut(s)	48, 215, 405
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	3 cut(s)	48, 215, 405
FspBI	CTAG	2 cut(s)	543, 694
GluI	GCNGC	3 cut(s)	48, 215, 405
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	2 cut(s)	372, 600
Hin1II	CATG	5 cut(s)	329, 334, 381, 538, 607
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	4 cut(s)	14, 35, 161, 612
HpaII	CCGG	2 cut(s)	372, 600
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	4 cut(s)	106, 280, 338, 488
Hpy188I	TCNGA	3 cut(s)	67, 358, 476
Hpy188III	TCNNGA	2 cut(s)	128, 444
Hpy8I	GTNNAC	4 cut(s)	106, 280, 338, 488
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	6 cut(s)	22, 83, 167, 217, 377, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	633, 655
Hsp92II	CATG	5 cut(s)	329, 334, 381, 538, 607
Kzo9I	GATC	3 cut(s)	596, 629, 672
LmnI	GCTCC	3 cut(s)	240, 260, 374
Lsp1109I	GCAGC	3 cut(s)	34, 201, 416
LweI	GCATC	2 cut(s)	349, 474
MaeI	CTAG	2 cut(s)	543, 694
MalI	GATC	3 cut(s)	598, 631, 674
MboI	GATC	3 cut(s)	596, 629, 672
MboII	GAAGA	3 cut(s)	80, 143, 551
MflI	RGATCY	1 cut(s)	596
MluCI	AATT	3 cut(s)	23, 182, 311
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	7 cut(s)	80, 83, 187, 384, 563, 580, 658
Mph1103I	ATGCAT	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	2 cut(s)	372, 600
MspR9I	CCNGG	2 cut(s)	609, 617
MvaI	CCWGG	2 cut(s)	609, 617
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	3 cut(s)	596, 629, 672
NlaIII	CATG	5 cut(s)	329, 334, 381, 538, 607
NlaIV	GGNNCC	2 cut(s)	236, 598
NsiI	ATGCAT	1 cut(s)	467
NspI	RCATGY	3 cut(s)	329, 538, 607
PaeI	GCATGC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	14, 161, 612
PkrI	GCNGC	3 cut(s)	49, 216, 406
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	607, 615
PspGI	CCWGG	2 cut(s)	607, 615
PspN4I	GGNNCC	2 cut(s)	236, 598
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	489, 567
RsaNI	GTAC	2 cut(s)	488, 566
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	48, 215, 405
Sau3AI	GATC	3 cut(s)	596, 629, 672
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	609, 617
SfaNI	GCATC	2 cut(s)	349, 474
SfcI	CTRYAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	607
Sse9I	AATT	3 cut(s)	23, 182, 311
SspMI	CTAG	2 cut(s)	543, 694
StyD4I	CCNGG	2 cut(s)	607, 615
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	321, 628, 671
TasI	AATT	3 cut(s)	23, 182, 311
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	3 cut(s)	14, 161, 612
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	3 cut(s)	47, 214, 404
TspDTI	ATGAA	2 cut(s)	304, 473
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	3 cut(s)	329, 538, 607
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	543, 694
Zsp2I	ATGCAT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.