Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Forward (+)

24312295 .. 24312771

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCTATATATAGCTTCGGTGTGTTAGTTCTGGAGATAGTGAGCGGACAGAAAAACAGTTCTTTCCGTCATGAAGGGAATGTGGAAGATCTTCTAAGCTATGCATGGAGAAGCTGGAGGGAAGGGTCAGCAGCTTCAAATCTAATAGATAACAGCTTGATGACTGGTTCAAGAACTGAAATAATGAAATGCATCCATATCGGATTACTATGTGTACAACAAAATATAGATGATAGGCCAAGCATGGCTTCGGTTACTCACATGCTTACTAGCAACTCCCTCACTCTTCCAGTACCCTCACAACCATCATTTCTTATGATTGGATCCAGCATGCCAGGAATCATGGGTTCAAGTCGATCTAAGAGCAACTCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

6.82

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	2 cut(s)	318, 331
AfaI	GTAC	2 cut(s)	216, 294
AgsI	TTSAA	3 cut(s)	138, 171, 351
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	5 cut(s)	15, 99, 114, 134, 156
AluI	AGCT	5 cut(s)	15, 99, 114, 134, 156
AlwI	GGATC	2 cut(s)	318, 331
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	270, 376
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	2 cut(s)	53, 136
Bse1I	ACTGG	2 cut(s)	169, 290
BseBI	CCWGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	169, 290
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	88, 323, 356
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	318, 331
BsrBI	CCGCTC	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	169, 290
BssMI	GATC	3 cut(s)	88, 323, 356
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	95, 360
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	3 cut(s)	91, 326, 359
BstMBI	GATC	3 cut(s)	88, 323, 356
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	265, 334
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	88, 323
BstYI	RGATCY	2 cut(s)	88, 323
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	332
CciI	TCATGA	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	215, 293
CviAII	CATG	6 cut(s)	71, 105, 244, 262, 331, 343
CviJI	RGCY	7 cut(s)	15, 99, 114, 134, 156, 238, 248
CviKI_1	RGCY	7 cut(s)	15, 99, 114, 134, 156, 238, 248
CviQI	GTAC	2 cut(s)	215, 293
DdeI	CTNAG	2 cut(s)	95, 360
DpnI	GATC	3 cut(s)	90, 325, 358
DpnII	GATC	3 cut(s)	88, 323, 356
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	106, 194
FaeI	CATG	6 cut(s)	74, 108, 247, 265, 334, 346
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	6 cut(s)	70, 104, 243, 261, 330, 342
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	270, 376
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	2 cut(s)	53, 136
HaeIII	GGCC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	74, 108, 247, 265, 334, 346
HinfI	GANTC	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	32, 71, 171
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	68, 116
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	104, 192
HpyF3I	CTNAG	2 cut(s)	95, 360
Hsp92II	CATG	6 cut(s)	74, 108, 247, 265, 334, 346
Kzo9I	GATC	3 cut(s)	88, 323, 356
LpnPI	CCDG	7 cut(s)	17, 100, 150, 303, 321, 340, 348
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	270, 376
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	90, 325, 358
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	3 cut(s)	88, 323, 356
MboII	GAAGA	3 cut(s)	83, 98, 278
MflI	RGATCY	2 cut(s)	88, 323
MnlI	CCTC	3 cut(s)	111, 290, 307
Mph1103I	ATGCAT	2 cut(s)	106, 194
MroXI	GAANNNNTTC	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	88, 323, 356
NlaIII	CATG	6 cut(s)	74, 108, 247, 265, 334, 346
NlaIV	GGNNCC	1 cut(s)	325
NsiI	ATGCAT	2 cut(s)	106, 194
NspI	RCATGY	2 cut(s)	265, 334
PaeI	GCATGC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	88, 323
RsaI	GTAC	2 cut(s)	216, 294
RsaNI	GTAC	2 cut(s)	215, 293
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	88, 323, 356
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	5 cut(s)	17, 101, 116, 136, 158
SfaNI	GCATC	1 cut(s)	201
SphI	GCATGC	1 cut(s)	334
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	270, 376
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	355
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	339
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	87, 200
TspGWI	ACGGA	1 cut(s)	56
XceI	RCATGY	2 cut(s)	265, 334
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	270, 376
Zsp2I	ATGCAT	2 cut(s)	106, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.