Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

29391680 .. 29392618

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCATCAAAAAATATCTGATTTTGGCATGGCCAGGATATTTGGGGTTGATCAAACTCAAGCAAACACGAATAGAATTGCCGGAACATTTGGTTATATGTCTCCCGAGTACGTAAGGCACGGATGTTTTTCTGTCAAGTCCGATCTATATAGTTTCGGTGTTTTAGTGCTAGAAATCATCAGTGGCAAGAAGAACAGTACATTCTTTCAGACCGATGTAGCTGAGGACCTCATGAGCCATTTATGGAGAGATGGGGCACCTTTGGAATTGTTGGATCCGTGTCTAAGAGATTCTTATTCGAGGACTGAAGTAATCAGATGCATCCACATCGGCTTACTTTGTGTTCAGGAAGATCCAGCTGACAGGCCGACAATGCAATCGGTAGTTCTCATGCTCAGTAGCTACTCTCTTACTCTGCCATCACCTCAACAACCGGCATTTTTCCTCCAAAGCAGAGCAATGGGAAACATGTCAGGGGCAACACTGGACTCCGCTCAATCATCTCCATCCGTTTATGAAGGATCTAACACTGAAGTATACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

183

Amino Acids

20.22

Weight (kDa)

5.27

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 130	1e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 129	3.7e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	4 cut(s)	269, 282, 347, 529
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	110, 199
AflIII	ACRYGT	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	221, 359, 402
AluI	AGCT	3 cut(s)	221, 359, 402
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	4 cut(s)	269, 282, 347, 529
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	30, 365
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	222
BccI	CCATC	3 cut(s)	245, 427, 514
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	34
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	170, 543
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	258, 276
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	3 cut(s)	13, 308, 330
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	34
BseGI	GGATG	3 cut(s)	128, 321, 506
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	213, 409
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	32, 367
BshNI	GGYRCC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	81, 434
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	32, 367
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	49, 142, 274, 352, 521
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	32, 367
BspCNI	CTCAG	2 cut(s)	214, 408
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	258, 276
BspPI	GGATC	4 cut(s)	269, 282, 347, 529
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	5 cut(s)	49, 142, 274, 352, 521
BssNAI	GTATAC	1 cut(s)	538
Bst1107I	GTATAC	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	222, 284, 395
BstF5I	GGATG	3 cut(s)	128, 321, 506
BstKTI	GATC	5 cut(s)	52, 145, 277, 355, 524
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	5 cut(s)	49, 142, 274, 352, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	259
BstSNI	TACGTA	1 cut(s)	112
BstX2I	RGATCY	3 cut(s)	274, 352, 521
BstYI	RGATCY	3 cut(s)	274, 352, 521
BstZ17I	GTATAC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	32, 367
BtsCI	GGATG	3 cut(s)	128, 321, 506
BtsIMutI	CAGTG	3 cut(s)	187, 482, 528
CciI	TCATGA	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	109, 198
CviAII	CATG	4 cut(s)	28, 232, 391, 469
CviJI	RGCY	7 cut(s)	32, 221, 237, 333, 359, 367, 402
CviKI_1	RGCY	7 cut(s)	32, 221, 237, 333, 359, 367, 402
CviQI	GTAC	2 cut(s)	109, 198
DdeI	CTNAG	3 cut(s)	222, 284, 395
DpnI	GATC	5 cut(s)	51, 144, 276, 354, 523
DpnII	GATC	5 cut(s)	49, 142, 274, 352, 521
EaeI	YGGCCR	1 cut(s)	30
Eco105I	TACGTA	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	32
EcoT22I	ATGCAT	2 cut(s)	6, 323
FaeI	CATG	4 cut(s)	31, 235, 394, 472
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FatI	CATG	4 cut(s)	27, 231, 390, 468
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	537
FokI	GGATG	3 cut(s)	135, 308, 493
FspBI	CTAG	2 cut(s)	170, 543
HaeIII	GGCC	2 cut(s)	32, 367
HapII	CCGG	2 cut(s)	81, 434
Hin1II	CATG	4 cut(s)	31, 235, 394, 472
HinfI	GANTC	2 cut(s)	290, 488
HpaII	CCGG	2 cut(s)	81, 434
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	19, 142, 210, 317
Hpy188III	TCNNGA	3 cut(s)	104, 232, 347
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	4, 321, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	222, 284, 395
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	31, 235, 394, 472
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	49, 142, 274, 352, 521
LpnPI	CCDG	9 cut(s)	19, 46, 94, 332, 349, 369, 447, 459, 470
LweI	GCATC	3 cut(s)	13, 308, 330
MaeI	CTAG	2 cut(s)	170, 543
MaeII	ACGT	1 cut(s)	111
MalI	GATC	5 cut(s)	51, 144, 276, 354, 523
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	5 cut(s)	49, 142, 274, 352, 521
MboII	GAAGA	2 cut(s)	202, 362
MflI	RGATCY	3 cut(s)	274, 352, 521
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	2 cut(s)	75, 266
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	217, 239, 294, 435, 455
Mox20I	TGGCCA	1 cut(s)	32
Mph1103I	ATGCAT	2 cut(s)	6, 323
MscI	TGGCCA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	81, 434
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	373
NdeII	GATC	5 cut(s)	49, 142, 274, 352, 521
NlaIII	CATG	4 cut(s)	31, 235, 394, 472
NlaIV	GGNNCC	2 cut(s)	258, 276
NsiI	ATGCAT	2 cut(s)	6, 323
NspI	RCATGY	1 cut(s)	472
PagI	TCATGA	1 cut(s)	231
PciI	ACATGT	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	258, 276
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	274, 352, 521
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	110, 199
RsaNI	GTAC	2 cut(s)	109, 198
Sau3AI	GATC	5 cut(s)	49, 142, 274, 352, 521
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	7 cut(s)	114, 223, 231, 262, 361, 404, 427
SfaNI	GCATC	3 cut(s)	13, 308, 330
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SnaBI	TACGTA	1 cut(s)	112
Sse9I	AATT	2 cut(s)	75, 266
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	170, 543
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	75, 266
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	3 cut(s)	187, 489, 535
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	3 cut(s)	135, 267, 499
TspRI	CASTG	3 cut(s)	187, 489, 535
VpaK11BI	GGWCC	1 cut(s)	226
XceI	RCATGY	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	170, 543
Zsp2I	ATGCAT	2 cut(s)	6, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.