Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

26676658 .. 26676819

Gene Structure 162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGCCTTTGGGAAATGCATTTTGGTTGCTCAAATGCAGCAGATATATGCCTCCCGAATGTGTGATGCATGGACATTTTTCTGTTCAGTCTGATGTCTATAGTTTTGGCATGTTGAATTTGGAGATAATAAGTGGACAGAAAAATAGTTGCTTTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

53

Amino Acids

6.02

Weight (kDa)

6.8

Isoelectric Point (pI)

71.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	13 - 46	8.1e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
BmsI	GCATC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	48
CviAII	CATG	2 cut(s)	68, 109
EcoT22I	ATGCAT	2 cut(s)	19, 69
FaeI	CATG	2 cut(s)	71, 112
FaiI	YATR	5 cut(s)	45, 47, 69, 99, 110
FatI	CATG	2 cut(s)	67, 108
Fnu4HI	GCNGC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	37
FspEI	CC	9 cut(s)	7, 18, 54, 63, 66, 67, 90, 104, 117
GluI	GCNGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	71, 112
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	17, 36, 67
Hsp92II	CATG	2 cut(s)	71, 112
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	54
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	1 cut(s)	60
Mph1103I	ATGCAT	2 cut(s)	19, 69
NlaIII	CATG	2 cut(s)	71, 112
NsiI	ATGCAT	2 cut(s)	19, 69
NspI	RCATGY	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	97
SgeI	CNNG	3 cut(s)	65, 80, 121
Sse9I	AATT	1 cut(s)	115
TasI	AATT	1 cut(s)	115
TseI	GCWGC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	112
Zsp2I	ATGCAT	2 cut(s)	19, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.