Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002863

Physical Location & Seq

Genomic Coordinates Reverse (-)

27247323 .. 27247843

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGTCAGAATATGTAAATCAGAGTCGCTTTTCTGTCAAATCAGATGTCTTTAGTTTTGGCGTGATAGTTCTTGAGATAGTTAGTGGTCAGAAGATTGGTAGTTTCTGGAATGGTGACAATGCAGAGGATCTTTTAAGCTATGCCTGGAGAAATTGGAGGCAGGATACAATTCTAAATATCATAGATCCCATGTTGACAACATGCTCAAGAAATGAAATGATCAGATGCATCCACATTGGTTTACTATGTGTCCAAGAAAATGCGAATGACAGACCAACCATGGGTTCTGTTGCTTCCATGCTTAACAGTCATTCTCTCATACATTTAGTACCCTCAAAACCAGCATATTATTCGCAATATAACTCTGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

125

Amino Acids

14.15

Weight (kDa)

5.48

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 101	1.4e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02801
malus_domestica	MD05G1337200.v1.1 MD07G1013600.v1.1 MD07G1013800.v1.1 MD14G1206900.v1.1
prunus_persica	Prupe.4G028300_v2.0.a1
pyrus_communis	pycom08g11830 pycom10g26440 pycom11g01830
rosa_chinensis	RchiOBHm_Chr2g0114621 RchiOBHm_Chr2g0114771 RchiOBHm_Chr2g0114811 RchiOBHm_Chr5g0033421 RchiOBHm_Chr5g0033511 RchiOBHm_Chr5g0033551 RchiOBHm_Chr6g0284031
rosa_laevigata	RLG00000030479 RLG00000031213
rosa_multiflora	Rmu_co8312939.1_g000001 Rmu_co8353809.1_g000001 Rmu_sc0002206.1_g000013 Rmu_sc0002206.1_g000041 Rmu_sc0003102.1_g000002 Rmu_sc0005660.1_g000007 Rmu_sc0032629.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046580 Rroxscaffold_1G00071400 Rroxscaffold_1G00071700 Rroxscaffold_1G00071740 Rroxscaffold_7G00169640 Rroxscaffold_7G00185010
rosa_rugosa	Rorug06G0159700
rosa_samantha	Rh5AG230700 Rh5AG230900 Rh5AG231400 Rh5AG233700 Rh5BG234200 Rh6BG404100 Rh6BG404200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	138, 182
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AlwI	GGATC	2 cut(s)	138, 182
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AsuHPI	GGTGA	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	218, 240
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	95, 193
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	130, 187, 222
Bsp19I	CCATGG	1 cut(s)	282
BspPI	GGATC	2 cut(s)	138, 182
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	130, 187, 222
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	3 cut(s)	133, 190, 225
BstMBI	GATC	3 cut(s)	130, 187, 222
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	130, 187
BstYI	RGATCY	2 cut(s)	130, 187
BsuI	GTATCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	4 cut(s)	193, 204, 283, 301
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
CviQI	GTAC	1 cut(s)	332
DpnI	GATC	3 cut(s)	132, 189, 224
DpnII	GATC	3 cut(s)	130, 187, 222
Eco130I	CCWWGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	196, 207, 286, 304
FatI	CATG	4 cut(s)	192, 203, 282, 300
FbaI	TGATCA	1 cut(s)	222
FokI	GGATG	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	196, 207, 286, 304
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	198, 245
Hpy188I	TCNGA	7 cut(s)	10, 24, 46, 93, 227, 370, 377
Hpy188III	TCNNGA	3 cut(s)	74, 109, 210
Hpy8I	GTNNAC	2 cut(s)	198, 245
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	125, 231
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	196, 207, 286, 304
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	130, 187, 222
LpnPI	CCDG	5 cut(s)	94, 133, 149, 160, 357
LweI	GCATC	2 cut(s)	218, 240
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	132, 189, 224
MboI	GATC	3 cut(s)	130, 187, 222
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	2 cut(s)	130, 187
MluCI	AATT	2 cut(s)	154, 171
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	121, 153, 346
Mph1103I	ATGCAT	1 cut(s)	233
MseI	TTAA	2 cut(s)	137, 306
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	130, 187, 222
NlaIII	CATG	4 cut(s)	196, 207, 286, 304
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	1 cut(s)	207
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	130, 187
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	137, 306
Sau3AI	GATC	3 cut(s)	130, 187, 222
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	218, 240
SmlI	CTYRAG	2 cut(s)	74, 208
SmoI	CTYRAG	2 cut(s)	74, 208
Sse9I	AATT	2 cut(s)	154, 171
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	311
TasI	AATT	2 cut(s)	154, 171
Tru1I	TTAA	2 cut(s)	137, 306
Tru9I	TTAA	2 cut(s)	137, 306
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	231
XceI	RCATGY	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.