FvH4_3g29252

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000518
Physical Location & Seq
Forward (+)
22375890 .. 22380751
4862 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29252.t1

Sequence Viewer

Length: 1002 bp
ATGACTCACAAGGACGTGGTGGAGGACGTCATCTTCAACAAGGACAGAGAGTTCTACACGGTAGTTTTGGAGAAAGGAGACAAGGTGGCGATGGTGGCAAATGTGAGGGTTCATGATGACTTGGCGGAGGCGCCACTGGTGGCGACAGGGTTTGAGTTTCAGAGGCAAGGGACGTGTAAGGTGTTGATGAGTGAGATTGAGAAGTGGCTTAGGGAGTATGGAGTTGAGAGGCTTGTGTTGCCTTCAGTGCAAAGCGCGATGAAGACATGGACGAGTAGTTCGATGGGGTTTGAGACTATGACTGAGGATGAGAGAACTGATCTTCTCATTGCTTATGACTGCATGGATTTTCAAGACACAAAGCAACTCTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAGAAGAAGAATGAGAACTGTGATAGCGTGTCTAGTGATGGCTCTACAATATCTCATGAAGATCAAAGCTCAAAGGGCTTGCACTTTGACGACAGGAGCAGGGACGACGCTGTATACTGCAACAACGCAGTTCATTGGATCAGAGACGGAAGTGCGTCAAGTATGCCCTTCTGCACATTGGATGGTAGGCATGAATTCAGAAGAGAGGAACCTGATGTGCTGCACTACTTTGAGATAAGCCAAGAGCGTTTGCTTGTCGTGTCGGTTATCCCTCCTGTCCCCTCGGTGGTCGAAAACATTCCACTGGATGTTACTTCTGGCTCCTTGTATCCAACTACGTGGCCGAGATTGAATCAGAGATACTTTGGGGAGTACGCGGAGGAGAGCATTCAACATACAAGTGATGAGGTTACCGATTCTTCGATTGATCTTTTGTTGCACATGCCTGGTAAGGTCATATCTTATAATTTGAGGAGTGAGACCTTTAAGACATCTATTGAGCTAGCCAATAAGGAACTTTCTCTAGCTTCAGGTGATGATTATCGTCTTCGAGATGATGTTACTTTTCTTTCATGGAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

334

Amino Acids

38.31

Weight (kDa)

5.8

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 2 - 125 4.7e-32 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 531
AccII CGCG 2 cut(s) 257, 794
AciI CCGC 2 cut(s) 125, 794
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 2 cut(s) 228, 930
AcyI GRCGYC 2 cut(s) 27, 131
AfaI GTAC 1 cut(s) 791
AfiI CCNNNNNNNGG 1 cut(s) 703
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 5 cut(s) 37, 353, 373, 769, 809
AjiI CACGTC 2 cut(s) 16, 174
AjnI CCWGG 1 cut(s) 862
AloI GAACNNNNNNTCC 4 cut(s) 35, 67, 262, 294
AluBI AGCT 3 cut(s) 486, 919, 944
AluI AGCT 3 cut(s) 486, 919, 944
Alw26I GTCTC 5 cut(s) 72, 287, 555, 890, 988
AlwI GGATC 1 cut(s) 563
AoxI GGCC 1 cut(s) 758
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 2 cut(s) 133, 257
AsuHPI GGTGA 1 cut(s) 962
AsuNHI GCTAGC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 130
BbsI GAAGAC 2 cut(s) 269, 956
BbvI GCAGC 1 cut(s) 624
BccI CCATC 4 cut(s) 85, 277, 449, 593
BciT130I CCWGG 1 cut(s) 864
BciVI GTATCC 1 cut(s) 756
BcoDI GTCTC 5 cut(s) 72, 287, 555, 890, 988
BfaI CTAG 3 cut(s) 450, 920, 941
BfoI RGCGCY 1 cut(s) 134
BfuI GTATCC 1 cut(s) 756
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme1390I CCNGG 1 cut(s) 864
BmgBI CACGTC 2 cut(s) 16, 174
BmiI GGNNCC 3 cut(s) 132, 627, 739
BmrFI CCNGG 1 cut(s) 864
BmtI GCTAGC 1 cut(s) 923
BpiI GAAGAC 2 cut(s) 269, 956
Bpu10I CCTNAGC 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 756
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 2 cut(s) 27, 131
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 1 cut(s) 699
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse1I ACTGG 2 cut(s) 141, 726
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 3 cut(s) 313, 604, 730
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 141, 726
BseRI GAGGAG 2 cut(s) 812, 904
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 2 cut(s) 574, 623
Bsh1236I CGCG 2 cut(s) 257, 794
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 1 cut(s) 130
BslFI GGGAC 3 cut(s) 184, 533, 680
BslI CCNNNNNNNGG 1 cut(s) 703
BsmAI GTCTC 5 cut(s) 72, 287, 555, 890, 988
BsmBI CGTCTC 1 cut(s) 555
BsmFI GGGAC 3 cut(s) 184, 533, 680
BsmI GAATGC 1 cut(s) 804
BsnI GGCC 1 cut(s) 760
Bso31I GGTCTC 1 cut(s) 890
Bsp143I GATC 4 cut(s) 319, 478, 555, 844
BspACI CCGC 2 cut(s) 125, 794
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 2 cut(s) 257, 794
BspHI TCATGA 2 cut(s) 112, 472
BspLI GGNNCC 3 cut(s) 132, 627, 739
BspOI GCTAGC 1 cut(s) 923
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 2 cut(s) 141, 726
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 4 cut(s) 319, 478, 555, 844
BssNAI GTATAC 1 cut(s) 532
BssNI GRCGYC 2 cut(s) 27, 131
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 2 cut(s) 61, 437
Bst6I CTCTTC 1 cut(s) 613
BstACI GRCGYC 2 cut(s) 27, 131
BstBAI YACGTR 1 cut(s) 756
BstC8I GCNNGC 2 cut(s) 497, 921
BstDEI CTNAG 2 cut(s) 209, 303
BstEII GGTNACC 1 cut(s) 826
BstF5I GGATG 3 cut(s) 313, 604, 730
BstFNI CGCG 2 cut(s) 257, 794
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 133, 257
BstKTI GATC 4 cut(s) 322, 481, 558, 847
BstMAI GTCTC 5 cut(s) 72, 287, 555, 890, 988
BstMBI GATC 4 cut(s) 319, 478, 555, 844
BstMWI GCNNNNNNNGC 4 cut(s) 95, 238, 247, 492
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 862
BstPI GGTNACC 1 cut(s) 826
BstSCI CCNGG 1 cut(s) 862
BstUI CGCG 2 cut(s) 257, 794
BstV1I GCAGC 1 cut(s) 624
BstV2I GAAGAC 2 cut(s) 269, 956
BstXI CCANNNNNNTGG 1 cut(s) 756
BstZ17I GTATAC 1 cut(s) 532
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 1 cut(s) 760
BtgZI GCGATG 2 cut(s) 104, 272
BtrI CACGTC 2 cut(s) 16, 174
BtsCI GGATG 3 cut(s) 313, 604, 730
BtsIMutI CAGTG 3 cut(s) 134, 252, 719
Cac8I GCNNGC 2 cut(s) 497, 921
CciI TCATGA 2 cut(s) 112, 472
CfoI GCGC 2 cut(s) 133, 257
CseI GACGC 2 cut(s) 533, 561
Csp6I GTAC 1 cut(s) 790
CviAII CATG 7 cut(s) 113, 267, 343, 473, 608, 859, 990
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 2 cut(s) 209, 303
DinI GGCGCC 1 cut(s) 132
DpnI GATC 4 cut(s) 321, 480, 557, 846
DpnII GATC 4 cut(s) 319, 478, 555, 844
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
EciI GGCGGA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 890
Eco57I CTGAAG 2 cut(s) 228, 930
Eco91I GGTNACC 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 862
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 7 cut(s) 116, 270, 346, 476, 611, 862, 993
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 3 cut(s) 184, 533, 680
FatI CATG 7 cut(s) 112, 266, 342, 472, 607, 858, 989
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 3 cut(s) 320, 611, 737
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 3 cut(s) 450, 920, 941
GlaI GCGC 2 cut(s) 132, 256
GluI GCNGC 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 760
HgaI GACGC 2 cut(s) 533, 561
HhaI GCGC 2 cut(s) 133, 257
Hin1I GRCGYC 2 cut(s) 27, 131
Hin1II CATG 7 cut(s) 116, 270, 346, 476, 611, 862, 993
Hin6I GCGC 2 cut(s) 131, 255
HinP1I GCGC 2 cut(s) 131, 255
HinfI GANTC 3 cut(s) 4, 769, 833
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 162, 560, 617, 774
Hpy188III TCNNGA 5 cut(s) 113, 353, 370, 473, 968
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 2 cut(s) 252, 595
HpyCH4III ACNGT 2 cut(s) 61, 437
HpyCH4IV ACGT 4 cut(s) 15, 27, 173, 755
HpyCH4V TGCA 7 cut(s) 250, 342, 499, 537, 591, 640, 856
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 238, 247, 492
HpyF3I CTNAG 2 cut(s) 209, 303
HpySE526I ACGT 4 cut(s) 15, 27, 173, 755
Hsp92I GRCGYC 2 cut(s) 27, 131
Hsp92II CATG 7 cut(s) 116, 270, 346, 476, 611, 862, 993
HspAI GCGC 2 cut(s) 131, 255
KasI GGCGCC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 319, 478, 555, 844
LmnI GCTCC 2 cut(s) 513, 743
Lsp1109I GCAGC 1 cut(s) 624
MaeI CTAG 3 cut(s) 450, 920, 941
MaeII ACGT 4 cut(s) 15, 27, 173, 755
MaeIII GTNAC 3 cut(s) 727, 826, 976
MalI GATC 4 cut(s) 321, 480, 557, 846
MboI GATC 4 cut(s) 319, 478, 555, 844
MluCI AATT 2 cut(s) 611, 883
Mly113I GGCGCC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 773
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 1 cut(s) 816
MspR9I CCNGG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 804
MvaI CCWGG 1 cut(s) 864
MvnI CGCG 2 cut(s) 257, 794
MwoI GCNNNNNNNGC 4 cut(s) 95, 238, 247, 492
NarI GGCGCC 1 cut(s) 131
NdeII GATC 4 cut(s) 319, 478, 555, 844
NheI GCTAGC 1 cut(s) 919
NlaIII CATG 7 cut(s) 116, 270, 346, 476, 611, 862, 993
NlaIV GGNNCC 3 cut(s) 132, 627, 739
NmeAIII GCCGAG 1 cut(s) 786
NspI RCATGY 1 cut(s) 862
PagI TCATGA 2 cut(s) 112, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 769, 833
PkrI GCNGC 1 cut(s) 639
PluTI GGCGCC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 756
PsiI TTATAA 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 862
PspEI GGTNACC 1 cut(s) 826
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 3 cut(s) 132, 627, 739
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 4 cut(s) 319, 478, 555, 844
ScrFI CCNGG 1 cut(s) 864
SfoI GGCGCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 2 cut(s) 611, 883
SsiI CCGC 2 cut(s) 125, 794
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 3 cut(s) 450, 920, 941
StyD4I CCNGG 1 cut(s) 862
TaaI ACNGT 2 cut(s) 61, 437
TaiI ACGT 4 cut(s) 18, 30, 176, 758
TaqI TCGA 4 cut(s) 281, 708, 839, 967
TasI AATT 2 cut(s) 611, 883
TfiI GAWTC 2 cut(s) 769, 833
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 3 cut(s) 141, 252, 726
TseI GCWGC 1 cut(s) 637
TspDTI ATGAA 6 cut(s) 101, 275, 489, 539, 624, 978
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 3 cut(s) 141, 252, 726
XapI RAATTY 1 cut(s) 611
XceI RCATGY 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 3 cut(s) 450, 920, 941
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.