Rmu_co7995100.1_g000001

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7995100.1
OG0000518
Physical Location & Seq
Reverse (-)
2 .. 407
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7995100.1_g000001.1.cds

Sequence Viewer

Length: 406 bp
atgaagcggaagcgggcctttactatggcttcgtcatcgtcgtctaccgtgaaaccctcgcgcttccctgaagaagaatcagtccggtgttgggagagcaaaacggcgtcgtcaaacagaacccgaccccaaatccaatccagatcaagaagaggatcgaaaacaagaaacatcaatgatgtcttaaaagatgaaagatccaagatttctgggatcaaccggattttggggacacccattcccgtgagcaataacctgacatggaggcttttgaaatctcacatgcgaattgaatctttttactgcaccaagctccactccgctctcaatgccatccacgagtgtttcgagccttccaaagacccctacaccaacagagacattgctgaggacattgtcttcgact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

135

Amino Acids

15.56

Weight (kDa)

10.02

Isoelectric Point (pI)

73.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 7, 13, 321
AclWI GGATC 3 cut(s) 163, 192, 221
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 91, 226
AgsI TTSAA 2 cut(s) 274, 293
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 3 cut(s) 163, 192, 221
AoxI GGCC 1 cut(s) 15
ArsI GACNNNNNNTTYG 1 cut(s) 383
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 15
BauI CACGAG 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 387
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 107
BsaWI WCCGGW 2 cut(s) 84, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 226
Bse3DI GCAATG 1 cut(s) 381
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 91, 226
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 85, 220
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 91, 226
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 143, 155, 197, 213
BspACI CCGC 3 cut(s) 7, 13, 321
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 61
BspPI GGATC 3 cut(s) 163, 192, 221
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 381
BssMI GATC 4 cut(s) 143, 155, 197, 213
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 4 cut(s) 146, 158, 200, 216
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 4 cut(s) 143, 155, 197, 213
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 286
BstUI CGCG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 96
CviAII CATG 2 cut(s) 261, 283
CviJI RGCY 5 cut(s) 17, 29, 268, 313, 352
CviKI_1 RGCY 5 cut(s) 17, 29, 268, 313, 352
DdeI CTNAG 1 cut(s) 387
DpnI GATC 4 cut(s) 145, 157, 199, 215
DpnII GATC 4 cut(s) 143, 155, 197, 213
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 2 cut(s) 264, 286
FaiI YATR 3 cut(s) 26, 262, 284
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 260, 282
FauI CCCGC 1 cut(s) 6
FblI GTMKAC 1 cut(s) 44
FokI GGATG 1 cut(s) 320
GlaI GCGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 17
HapII CCGG 2 cut(s) 85, 220
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 264, 286
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 2 cut(s) 77, 293
HpaII CCGG 2 cut(s) 85, 220
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 141, 147
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 43, 112
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 264, 286
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 4 cut(s) 143, 155, 197, 213
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 6 cut(s) 81, 98, 154, 195, 233, 269
MalI GATC 4 cut(s) 145, 157, 199, 215
MbiI CCGCTC 1 cut(s) 323
MboI GATC 4 cut(s) 143, 155, 197, 213
MboII GAAGA 4 cut(s) 83, 86, 162, 391
MflI RGATCY 1 cut(s) 197
MluCI AATT 1 cut(s) 288
MnlI CCTC 4 cut(s) 67, 146, 258, 382
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 85, 220
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 4 cut(s) 143, 155, 197, 213
NlaIII CATG 2 cut(s) 264, 286
NspI RCATGY 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 345
PfeI GAWTC 2 cut(s) 77, 293
PflFI GACNNNGTC 1 cut(s) 395
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 197
PsyI GACNNNGTC 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 4 cut(s) 143, 155, 197, 213
Sau96I GGNCC 1 cut(s) 15
SetI ASST 2 cut(s) 258, 315
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 1 cut(s) 288
SsiI CCGC 3 cut(s) 7, 13, 321
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 158, 348, 402
TasI AATT 1 cut(s) 288
TfiI GAWTC 2 cut(s) 77, 293
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 17, 207
Tth111I GACNNNGTC 1 cut(s) 395
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.