Rroxscaffold_3G00239570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000518
Physical Location & Seq
Reverse (-)
29944960 .. 29945494
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239570.1

Sequence Viewer

Length: 285 bp
ATGGCGTTTGGTAAAGGAGAGGCGTTGCTCGAGCGAGAGTACTCGACGAAGCTAGTTGAGAACGTCAAGTTCACCTTGGTTGATGTTGCCGGGAGGAGATTGAGTGAGAAAAACCTCATACGGGTTGGTTACTTGCATTTCGCATCGCATGTTGGGGATCTTCAAGGAGAGGCTGAAGTGCCACTTGTGGTGACTAGGCCTCGGTTTAGGAGACTTGGGTTGTGCGGGATTCGATGGTTGAGCTTGGTCACCGATTTACAAGCAGCTAGGCTGGGTAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

9.89

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 3 cut(s) 52, 243, 266
AluI AGCT 3 cut(s) 52, 243, 266
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 64, 202, 241
AvaI CYCGRG 1 cut(s) 29
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 228
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 3 cut(s) 53, 195, 267
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 75, 200
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 75, 200
BseLI CCNNNNNNNGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 75, 200
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 247
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 152
BstPI GGTNACC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 129
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 52, 173, 199, 243, 266, 271
CviKI_1 RGCY 6 cut(s) 52, 173, 199, 243, 266, 271
CviQI GTAC 1 cut(s) 40
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 119, 150
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 168, 200
FatI CATG 1 cut(s) 148
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 3 cut(s) 53, 195, 267
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 90
HphI GGTGA 3 cut(s) 64, 202, 241
Hpy166II GTNNAC 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 103, 257
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 1 cut(s) 152
MaeI CTAG 3 cut(s) 53, 195, 267
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 128, 190, 247
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 278
MnlI CCTC 5 cut(s) 13, 87, 125, 163, 210
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 91
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 190, 247
NspI RCATGY 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 29
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 265
PspEI GGTNACC 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 29
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 91
SetI ASST 6 cut(s) 54, 66, 77, 117, 245, 268
SfaNI GCATC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 1 cut(s) 225
SspMI CTAG 3 cut(s) 53, 195, 267
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 30, 44, 232
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 229
TseFI GTSAC 2 cut(s) 190, 247
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 2 cut(s) 190, 247
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 152
XhoI CTCGAG 1 cut(s) 29
XspI CTAG 3 cut(s) 53, 195, 267
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.