RchiOBHm_Chr7g0225821

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000518
Physical Location & Seq
Forward (+)
48753041 .. 48756703
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20227

Sequence Viewer

Length: 615 bp
ATGGCATCGCCATGGTCATCTACCATGAAACCCTCGCGCGTTCCTGAAGAAGAATCAGTCCGGTGTTGGGAGAGCAAAACGGCGTCGTCAAACAGAACCCGACCCCAAATCCAATCCAGATCAAGAAGAGGATCGAAAACAAGAAACATCAATGATGTCTTAAAAGATGAAAGATCCAAGATTTCTGGGATCAACCGGATTTTGGGGACACCCATTCCCGTGAGGAATAACCTGACATGGAGGCTTTTGAAATCTCACATGCGAATTGAATCTTTTTACTGCACCAAGCTCCACTCCGCTCTCAATGCCATCCACGAGTGTTTCGAGCCTTCCAAAGACCCCTACACCAACAGAGACATTGCTGAGGACATTGTCTTCGACTTGGAATCCGATTCCGAGTTGAATTTGAGAGGGTTTTACACTGTGGTTTTGGAGAGGAGAGATGATGATGATGGTCATCAGGAGATGATCGGTGCCGCCACGGTGAGGATCAATAAGGGAGTTGCTGAAGTGCCACTCGTGGCGACTAGGCCTCAGTTTAGGAGACTTGGGATGTGCAGGATTTTGATGAATGAGCTCGAAAATCGGCTCATGGAATTCGGCATTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

204

Amino Acids

23.58

Weight (kDa)

8.98

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 108 - 204 6.7e-22 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000518)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21681 FvH4_3g29252 FvH4_3g38950 FvH4_3g44310 FvH4_5g29400
malus_domestica MD03G1066300.v1.1
rosa_chinensis RchiOBHm_Chr2g0087341 RchiOBHm_Chr7g0225691 RchiOBHm_Chr7g0225721 RchiOBHm_Chr7g0225751 RchiOBHm_Chr7g0225781 RchiOBHm_Chr7g0225811 RchiOBHm_Chr7g0225821 RchiOBHm_Chr7g0225841 RchiOBHm_Chr7g0225941
rosa_laevigata RLG00000001777 RLG00000001779 RLG00000001787 RLG00000001796 RLG00000015858 RLG00000018399 RLG00000030202
rosa_multiflora Rmu_co7995100.1_g000001 Rmu_sc0003367.1_g000025 Rmu_sc0004082.1_g000018 Rmu_sc0006064.1_g000002 Rmu_sc0011806.1_g000001 Rmu_sc0014642.1_g000005 Rmu_sc0014767.1_g000003 Rmu_sc0015723.1_g000001 Rmu_sc0030795.1_g000001 Rmu_sc0033647.1_g000001
rosa_roxburghii Rroxscaffold_1G00028220 Rroxscaffold_2G00089180 Rroxscaffold_2G00125860 Rroxscaffold_3G00233350 Rroxscaffold_3G00239570 Rroxscaffold_4G00325690 Rroxscaffold_5G00348560 Rroxscaffold_7G00198070
rosa_rugosa Rorug01G0045600 Rorug01G0474300.1 Rorug07G0220000 Rorug07G0220100 Rorug07G0220200 Rorug07G0220300 Rorug07G0232800 Rorug07G0233000 Rorug07G0233100 Rorug07G0233100 Rorug07G0233200 Rorug07G0233300.1
rosa_samantha Rh1AG061100 Rh1BG052200 Rh1CG063300 Rh1CG063600 Rh1DG067700 Rh2AG027900 Rh2BG027400 Rh2CG028200 Rh2DG028000 Rh7AG369700 Rh7AG370100 Rh7AG371200 Rh7AG387800 Rh7BG366500 Rh7BG366800 Rh7BG367000 Rh7BG367600 Rh7CG388600 Rh7CG389000 Rh7CG389800 Rh7CG407400 Rh7DG377400 Rh7DG377500 Rh7DG377900 Rh7DG378600 Rh7DG378700 Rh7DG378800
rosa_wichuraiana Rw0G020970 Rw0G020980 Rw1G005200 Rw2G002210 Rw7G031830 Rw7G031860 Rw7G031900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 2 cut(s) 37, 39
AciI CCGC 2 cut(s) 297, 477
AclWI GGATC 4 cut(s) 139, 168, 197, 497
AcsI RAATTY 2 cut(s) 403, 596
AcuI CTGAAG 2 cut(s) 66, 528
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 3 cut(s) 67, 202, 486
AgsI TTSAA 3 cut(s) 250, 269, 403
AluBI AGCT 2 cut(s) 289, 577
AluI AGCT 2 cut(s) 289, 577
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 348, 538
AlwI GGATC 4 cut(s) 139, 168, 197, 497
AoxI GGCC 1 cut(s) 530
ApoI RAATTY 2 cut(s) 403, 596
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 579
BauI CACGAG 2 cut(s) 314, 518
BbsI GAAGAC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 317, 446
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 348, 538
BfaI CTAG 1 cut(s) 528
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 367
Bpu10I CCTNAGC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 11, 480
BsaWI WCCGGW 2 cut(s) 60, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 202, 486
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 11, 480
BseGI GGATG 2 cut(s) 309, 558
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 67, 202, 486
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 354, 548
BseRI GAGGAG 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 265, 577
Bsh1236I CGCG 2 cut(s) 37, 39
BshFI GGCC 1 cut(s) 532
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 2 cut(s) 61, 196
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 3 cut(s) 67, 202, 486
BsmAI GTCTC 2 cut(s) 348, 538
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 6 cut(s) 119, 131, 173, 189, 468, 489
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 2 cut(s) 297, 477
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 2 cut(s) 355, 547
BspFNI CGCG 2 cut(s) 37, 39
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 4 cut(s) 139, 168, 197, 497
BspT107I GGYRCC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 11, 480
BssMI GATC 6 cut(s) 119, 131, 173, 189, 468, 489
BssNI GRCGYC 1 cut(s) 83
BssSI CACGAG 2 cut(s) 314, 518
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 2 cut(s) 314, 518
Bst4CI ACNGT 2 cut(s) 424, 484
Bst6I CTCTTC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 363, 534
BstDSI CCRYGG 2 cut(s) 11, 480
BstF5I GGATG 2 cut(s) 309, 558
BstFNI CGCG 2 cut(s) 37, 39
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 6 cut(s) 122, 134, 176, 192, 471, 492
BstMAI GTCTC 2 cut(s) 348, 538
BstMBI GATC 6 cut(s) 119, 131, 173, 189, 468, 489
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 2 cut(s) 37, 39
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 532
BtgI CCRYGG 2 cut(s) 11, 480
BtsCI GGATG 2 cut(s) 309, 558
BtsIMutI CAGTG 1 cut(s) 420
CfoI GCGC 1 cut(s) 39
CseI GACGC 1 cut(s) 72
CviAII CATG 5 cut(s) 12, 25, 237, 259, 592
CviJI RGCY 6 cut(s) 244, 289, 328, 532, 577, 589
CviKI_1 RGCY 6 cut(s) 244, 289, 328, 532, 577, 589
DdeI CTNAG 2 cut(s) 363, 534
DpnI GATC 6 cut(s) 121, 133, 175, 191, 470, 491
DpnII GATC 6 cut(s) 119, 131, 173, 189, 468, 489
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 66, 528
EcoICRI GAGCTC 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 5 cut(s) 15, 28, 240, 262, 595
FaiI YATR 5 cut(s) 13, 26, 238, 260, 593
FaqI GGGAC 1 cut(s) 220
FatI CATG 5 cut(s) 11, 24, 236, 258, 591
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 296, 565
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 532
HapII CCGG 2 cut(s) 61, 196
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 5 cut(s) 15, 28, 240, 262, 595
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 4 cut(s) 53, 269, 386, 392
HpaII CCGG 2 cut(s) 61, 196
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 2 cut(s) 391, 397
Hpy188III TCNNGA 4 cut(s) 44, 117, 123, 461
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 2 cut(s) 424, 484
HpyCH4V TGCA 2 cut(s) 282, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 363, 534
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 5 cut(s) 15, 28, 240, 262, 595
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 6 cut(s) 119, 131, 173, 189, 468, 489
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 8 cut(s) 57, 74, 130, 171, 209, 245, 446, 544
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 528
MalI GATC 6 cut(s) 121, 133, 175, 191, 470, 491
MbiI CCGCTC 1 cut(s) 299
MboI GATC 6 cut(s) 119, 131, 173, 189, 468, 489
MboII GAAGA 4 cut(s) 59, 62, 138, 367
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 3 cut(s) 264, 403, 596
MnlI CCTC 9 cut(s) 43, 122, 216, 234, 358, 404, 429, 480, 543
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 2 cut(s) 10, 218
MspI CCGG 2 cut(s) 61, 196
MvnI CGCG 2 cut(s) 37, 39
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 11
NdeII GATC 6 cut(s) 119, 131, 173, 189, 468, 489
NlaIII CATG 5 cut(s) 15, 28, 240, 262, 595
NlaIV GGNNCC 1 cut(s) 475
NspI RCATGY 1 cut(s) 262
PceI AGGCCT 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 4 cut(s) 53, 269, 386, 392
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 475
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 371
RseI CAYNNNNRTG 2 cut(s) 10, 218
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 6 cut(s) 119, 131, 173, 189, 468, 489
SduI GDGCHC 1 cut(s) 579
SetI ASST 3 cut(s) 234, 291, 579
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 10, 218
Sse9I AATT 3 cut(s) 264, 403, 596
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 2 cut(s) 297, 477
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 579
StuI AGGCCT 1 cut(s) 532
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 424, 484
TaqI TCGA 4 cut(s) 134, 324, 378, 579
TasI AATT 3 cut(s) 264, 403, 596
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 4 cut(s) 53, 269, 386, 392
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 41, 183, 584
TspRI CASTG 1 cut(s) 427
Tth111I GACNNNGTC 1 cut(s) 371
XapI RAATTY 2 cut(s) 403, 596
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.